mm10_v2_chr1_+_139454747_139454825	13.642	Six3_Six1_Six2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chrX_-_142966709_142966734	9.22134	Six3_Six1_Six2	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr9_+_98422961_98422961	8.43558	Six3_Six1_Six2	ENSMUST00000052068.9|Rbp1|ENSMUSG00000046402.9|retinol binding protein 1, cellular
mm10_v2_chr15_-_82244716_82244755	6.9043	Six3_Six1_Six2	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr18_+_56432116_56432163	6.67194	Six3_Six1_Six2	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chr15_-_75894474_75894529	6.24354	Six3_Six1_Six2	ENSMUST00000023237.6|Naprt1|ENSMUSG00000022574.6|nicotinate phosphoribosyltransferase domain containing 1
mm10_v2_chr5_+_140607334_140607352	6.20017	Six3_Six1_Six2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr7_-_80115294_80115392	5.2754	Six3_Six1_Six2	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr15_+_98571004_98571026	4.93475	Six3_Six1_Six2	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr5_+_139423151_139423186	4.60784	Six3_Six1_Six2	ENSMUST00000066211.4|Gper1|ENSMUSG00000053647.4|G protein-coupled estrogen receptor 1
mm10_v2_chr2_+_106693185_106693278	3.95799	Six3_Six1_Six2	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr3_-_85722474_85722474	3.51605	Six3_Six1_Six2	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr10_-_128180265_128180307	3.44783	Six3_Six1_Six2	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr9_+_65141154_65141198	3.31504	Six3_Six1_Six2	ENSMUST00000034961.4|Igdcc3|ENSMUSG00000032394.5|immunoglobulin superfamily, DCC subclass, member 3
mm10_v2_chr8_-_4275886_4275915	2.84925	Six3_Six1_Six2	ENSMUST00000003029.7|Timm44|ENSMUSG00000002949.8|translocase of inner mitochondrial membrane 44
mm10_v2_chr3_+_130068390_130068412	2.84331	Six3_Six1_Six2	ENSMUST00000076703.6|Gm9396|ENSMUSG00000063328.6|predicted gene 9396
mm10_v2_chr1_+_136467958_136467958	2.37934	Six3_Six1_Six2	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chrX_+_169685191_169685250	2.27849	Six3_Six1_Six2	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr9_+_72958785_72958850	2.13343	Six3_Six1_Six2	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr3_-_37724321_37724490	2.10543	Six3_Six1_Six2	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr3_+_94398517_94398538	2.02164	Six3_Six1_Six2	ENSMUST00000050975.3|Lingo4|ENSMUSG00000044505.3|leucine rich repeat and Ig domain containing 4
mm10_v2_chr13_+_104229366_104229388	2.00331	Six3_Six1_Six2	ENSMUST00000022227.6|Cenpk|ENSMUSG00000021714.8|centromere protein K
mm10_v2_chr4_-_32950813_32950866	1.77363	Six3_Six1_Six2	ENSMUST00000084750.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084748.2|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr14_+_57798182_57798218	1.66414	Six3_Six1_Six2	ENSMUST00000111269.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr10_+_24595623_24595780	1.63821	Six3_Six1_Six2	ENSMUST00000176228.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor 	ENSMUST00000129142.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor
mm10_v2_chr3_+_88207308_88207328	1.62478	Six3_Six1_Six2	ENSMUST00000180582.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764
mm10_v2_chr10_+_100488289_100488289	1.48409	Six3_Six1_Six2	ENSMUST00000164751.1|Cep290|ENSMUSG00000019971.9|centrosomal protein 290
mm10_v2_chr9_+_104002546_104002776	1.4336	Six3_Six1_Six2	ENSMUST00000035167.8|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent) 	ENSMUST00000117054.1|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent)
mm10_v2_chr7_-_126676357_126676383	1.42776	Six3_Six1_Six2	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr13_+_94083490_94083511	1.28128	Six3_Six1_Six2	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr7_+_30232310_30232350	1.24241	Six3_Six1_Six2	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr1_-_118982551_118982606	1.24052	Six3_Six1_Six2	ENSMUST00000159678.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr17_+_35241838_35241870	1.19198	Six3_Six1_Six2	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr7_-_126676428_126676439	1.18536	Six3_Six1_Six2	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr8_+_57455898_57455923	1.18478	Six3_Six1_Six2	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr6_+_38534823_38534872	1.00808	Six3_Six1_Six2	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chr2_+_131491764_131491943	0.963373	Six3_Six1_Six2	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr17_+_35241746_35241778	0.945905	Six3_Six1_Six2	ENSMUST00000068056.5|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENSMUST00000174757.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr7_-_141168671_141168936	0.918978	Six3_Six1_Six2	ENSMUST00000106033.3|Rnh1|ENSMUSG00000038650.8|ribonuclease/angiogenin inhibitor 1
mm10_v2_chr8_+_69832633_69832712	0.873073	Six3_Six1_Six2	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr4_-_43030440_43030593	0.805604	Six3_Six1_Six2	ENSMUST00000135660.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr8_-_106573461_106573462	0.786538	Six3_Six1_Six2	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr2_-_13271419_13271437	0.738117	Six3_Six1_Six2	ENSMUST00000028059.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr7_+_30231884_30231948	0.715103	Six3_Six1_Six2	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr11_-_69695521_69695713	0.703511	Six3_Six1_Six2	ENSMUST00000181261.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chr2_-_13271268_13271348	0.700704	Six3_Six1_Six2	ENSMUST00000137670.1|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1 	ENSMUST00000114791.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr4_+_133176336_133176371	0.664054	Six3_Six1_Six2	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr12_+_84773262_84773319	0.633613	Six3_Six1_Six2	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr3_+_146220955_146221009	0.604832	Six3_Six1_Six2	ENSMUST00000039164.2|Lpar3|ENSMUSG00000036832.4|lysophosphatidic acid receptor 3
mm10_v2_chr7_-_101903783_101903786	0.538654	Six3_Six1_Six2	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr15_-_76206309_76206357	0.489205	Six3_Six1_Six2	ENSMUST00000073418.6|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000171634.1|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000076442.5|Plec|ENSMUSG00000022565.9|plectin
mm10_v2_chr8_+_84831522_84831522	0.473476	Six3_Six1_Six2	ENSMUST00000036734.5|Gadd45gip1|ENSMUSG00000033751.5|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm10_v2_chr4_+_11758147_11758220	0.431845	Six3_Six1_Six2	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr19_-_55315980_55316038	0.424984	Six3_Six1_Six2	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr17_-_56716788_56716921	0.386234	Six3_Six1_Six2	ENSMUST00000067931.5|Vmac|ENSMUSG00000054723.5|vimentin-type intermediate filament associated coiled-coil protein
mm10_v2_chr17_-_53539411_53539459	0.362748	Six3_Six1_Six2	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr11_-_99230998_99231019	0.362047	Six3_Six1_Six2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chrX_-_74373218_74373249	0.351904	Six3_Six1_Six2	ENSMUST00000178691.1|Ubl4|ENSMUSG00000015290.9|ubiquitin-like 4 	ENSMUST00000114146.1|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr5_-_106926245_106926321	0.284898	Six3_Six1_Six2	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr19_-_23075853_23075904	0.266412	Six3_Six1_Six2	ENSMUST00000181623.1|C330002G04Rik|ENSMUSG00000097930.1|RIKEN cDNA C330002G04 gene
mm10_v2_chr5_+_21543525_21543590	0.243196	Six3_Six1_Six2	ENSMUST00000035651.4|Lrrc17|ENSMUSG00000039883.4|leucine rich repeat containing 17
mm10_v2_chrX_-_74373260_74373349	0.243062	Six3_Six1_Six2	ENSMUST00000073067.4|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3 	ENSMUST00000037967.5|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr14_+_58893465_58893506	0.236577	Six3_Six1_Six2	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr14_+_57798156_57798180	0.207999	Six3_Six1_Six2	ENSMUST00000128764.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr7_+_43690418_43690418	0.202007	Six3_Six1_Six2	ENSMUST00000056329.6|Klk14|ENSMUSG00000044737.6|kallikrein related-peptidase 14
mm10_v2_chr12_+_30584429_30584466	0.183025	Six3_Six1_Six2	ENSMUST00000057151.8|Tmem18|ENSMUSG00000043061.9|transmembrane protein 18
mm10_v2_chr17_+_40811089_40811133	0.177679	Six3_Six1_Six2	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr16_+_11203375_11203448	0.166988	Six3_Six1_Six2	ENSMUST00000181526.1|2610020C07Rik|ENSMUSG00000097537.1|RIKEN cDNA 2610020C07 gene
mm10_v2_chr10_-_78487842_78487842	0.152111	Six3_Six1_Six2	ENSMUST00000069431.4|Gm9978|ENSMUSG00000055704.4|predicted gene 9978
mm10_v2_chr19_+_8764934_8765034	0.142289	Six3_Six1_Six2	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr8_+_71951038_71951130	0.131997	Six3_Six1_Six2	ENSMUST00000131237.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000136516.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000109997.2|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000132848.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961
mm10_v2_chr9_-_121839460_121839465	0.108777	Six3_Six1_Six2	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr2_+_158028481_158028539	0.0891495	Six3_Six1_Six2	ENSMUST00000103123.3|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chrY_-_6237995_6237995	0.0860107	Six3_Six1_Six2	ENSMUST00000177612.1|Gm21746|ENSMUSG00000094346.1|predicted gene, 21746
mm10_v2_chr11_-_101987004_101987013	0.0813068	Six3_Six1_Six2	ENSMUST00000107173.2|Dusp3|ENSMUSG00000003518.7|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related) 	ENSMUST00000107172.1|Dusp3|ENSMUSG00000003518.7|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm10_v2_chr5_+_104046869_104046899	0.0355452	Six3_Six1_Six2	ENSMUST00000031250.7|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chr5_-_62765618_62765656	0.0104933	Six3_Six1_Six2	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr17_+_56717759_56717819	0.00164997	Six3_Six1_Six2	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr17_-_36951636_36951741	0.000325758	Six3_Six1_Six2	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
