mm10_v2_chr6_-_23248264_23248390	6.19433	Six4	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr7_-_137314394_137314445	2.3514	Six4	ENSMUST00000168203.1|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000106118.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000169486.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000033378.5|Ebf3|ENSMUSG00000010476.7|early B cell factor 3
mm10_v2_chr6_+_7555053_7555096	2.32043	Six4	ENSMUST00000090679.2|Tac1|ENSMUSG00000061762.6|tachykinin 1 	ENSMUST00000184986.1|Tac1|ENSMUSG00000061762.6|tachykinin 1
mm10_v2_chr17_+_35049966_35049966	2.31578	Six4	ENSMUST00000007257.9|Clic1|ENSMUSG00000007041.9|chloride intracellular channel 1
mm10_v2_chr13_+_51645232_51645276	1.91388	Six4	ENSMUST00000075853.5|Cks2|ENSMUSG00000062248.5|CDC28 protein kinase regulatory subunit 2
mm10_v2_chr7_-_143460989_143461050	1.88296	Six4	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr13_+_54071815_54071859	1.64339	Six4	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr14_-_103843685_103843703	1.57038	Six4	ENSMUST00000172237.1|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr8_+_62951361_62951498	1.42391	Six4	ENSMUST00000119068.1|Spock3|ENSMUSG00000054162.9|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm10_v2_chr1_-_78968079_78968079	1.37332	Six4	ENSMUST00000049117.5|Gm5830|ENSMUSG00000072978.2|predicted pseudogene 5830
mm10_v2_chr7_+_29307924_29308057	1.34828	Six4	ENSMUST00000108230.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1 	ENSMUST00000065181.5|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr6_+_50110186_50110383	1.347	Six4	ENSMUST00000166318.1|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036236.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 	ENSMUST00000036225.8|Mpp6|ENSMUSG00000038388.8|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm10_v2_chr7_+_29309429_29309513	1.34132	Six4	ENSMUST00000137848.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr11_+_67078293_67078307	1.28933	Six4	ENSMUST00000108689.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000165221.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000007301.7|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm10_v2_chr6_+_134929118_134929164	1.24056	Six4	ENSMUST00000185152.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184504.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr6_+_134929089_134929103	1.14264	Six4	ENSMUST00000183867.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184991.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000183905.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr3_+_40950631_40950657	1.09667	Six4	ENSMUST00000048490.6|Larp1b|ENSMUSG00000037814.9|La ribonucleoprotein domain family, member 1B
mm10_v2_chr5_-_145191511_145191548	1.07509	Six4	ENSMUST00000161845.1|Atp5j2|ENSMUSG00000038690.9|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
mm10_v2_chr4_-_134018829_134018841	1.02629	Six4	ENSMUST00000051674.2|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr13_-_9878998_9878998	0.944266	Six4	ENSMUST00000063093.9|Chrm3|ENSMUSG00000046159.9|cholinergic receptor, muscarinic 3, cardiac
mm10_v2_chr8_-_84237042_84237061	0.927754	Six4	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr19_-_6980420_6980481	0.857479	Six4	ENSMUST00000070878.8|Fkbp2|ENSMUSG00000056629.9|FK506 binding protein 2 	ENSMUST00000177752.1|Fkbp2|ENSMUSG00000056629.9|FK506 binding protein 2
mm10_v2_chr17_+_48409980_48410104	0.806634	Six4	ENSMUST00000167180.1|Oard1|ENSMUSG00000040771.7|O-acyl-ADP-ribose deacylase 1 	ENSMUST00000046651.6|Oard1|ENSMUSG00000040771.7|O-acyl-ADP-ribose deacylase 1
mm10_v2_chr19_+_8764934_8765034	0.737536	Six4	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr3_-_129831374_129831406	0.641958	Six4	ENSMUST00000029643.8|Gar1|ENSMUSG00000028010.10|GAR1 ribonucleoprotein homolog (yeast)
mm10_v2_chr2_+_119351222_119351233	0.634727	Six4	ENSMUST00000028780.3|Chac1|ENSMUSG00000027313.3|ChaC, cation transport regulator 1
mm10_v2_chr2_+_22622183_22622205	0.609298	Six4	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr3_+_145938004_145938063	0.60732	Six4	ENSMUST00000039571.7|2410004B18Rik|ENSMUSG00000036873.7|RIKEN cDNA 2410004B18 gene
mm10_v2_chr1_-_74284636_74284738	0.588925	Six4	ENSMUST00000178235.1|Aamp|ENSMUSG00000006299.7|angio-associated migratory protein 	ENSMUST00000006462.7|Aamp|ENSMUSG00000006299.7|angio-associated migratory protein
mm10_v2_chr6_+_124931378_124931425	0.570652	Six4	ENSMUST00000032214.7|Mlf2|ENSMUSG00000030120.8|myeloid leukemia factor 2 	ENSMUST00000180095.1|Mlf2|ENSMUSG00000030120.8|myeloid leukemia factor 2
mm10_v2_chr11_+_3989924_3989946	0.552006	Six4	ENSMUST00000109981.1|Gal3st1|ENSMUSG00000049721.8|galactose-3-O-sulfotransferase 1
mm10_v2_chr8_+_94214567_94214608	0.53984	Six4	ENSMUST00000079961.6|Nup93|ENSMUSG00000032939.7|nucleoporin 93
mm10_v2_chr10_-_80918212_80918256	0.523543	Six4	ENSMUST00000057623.7|Lmnb2|ENSMUSG00000062075.7|lamin B2 	ENSMUST00000179022.1|Lmnb2|ENSMUSG00000062075.7|lamin B2
mm10_v2_chrX_-_139714481_139714507	0.487448	Six4	ENSMUST00000183728.1|Gm15013|ENSMUSG00000098559.1|predicted gene 15013
mm10_v2_chr1_+_74284930_74285072	0.48664	Six4	ENSMUST00000113805.1|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000027370.6|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000087226.4|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia
mm10_v2_chr12_-_57546121_57546141	0.469075	Six4	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr14_-_89898466_89898466	0.446491	Six4	ENSMUST00000081204.4|Gm10110|ENSMUSG00000062093.4|predicted gene 10110
mm10_v2_chr2_+_131133497_131133497	0.442677	Six4	ENSMUST00000110225.1|Gm11037|ENSMUSG00000079039.1|predicted gene 11037
mm10_v2_chr17_+_24896488_24896530	0.409447	Six4	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr1_-_37890333_37890416	0.398229	Six4	ENSMUST00000139725.1|Mitd1|ENSMUSG00000026088.9|MIT, microtubule interacting and transport, domain containing 1 	ENSMUST00000027257.8|Mitd1|ENSMUSG00000026088.9|MIT, microtubule interacting and transport, domain containing 1
mm10_v2_chr15_-_79834224_79834245	0.391135	Six4	ENSMUST00000109623.1|Cbx6|ENSMUSG00000089715.5|chromobox 6 	ENSMUST00000023060.6|Npcd|ENSMUSG00000089837.3|neuronal pentraxin chromo domain 	ENSMUST00000089299.5|Npcd|ENSMUSG00000089837.3|neuronal pentraxin chromo domain 	ENSMUST00000109625.1|Cbx6|ENSMUSG00000089715.5|chromobox 6
mm10_v2_chr15_-_79834323_79834334	0.391105	Six4	ENSMUST00000177316.2|Nptxr|ENSMUSG00000022421.12|neuronal pentraxin receptor 	ENSMUST00000175858.2|Nptxr|ENSMUSG00000022421.12|neuronal pentraxin receptor
mm10_v2_chr1_-_180813534_180813583	0.366051	Six4	ENSMUST00000159789.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000081026.4|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr2_-_91444622_91444726	0.343787	Six4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr1_-_180813591_180813632	0.341217	Six4	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr1_+_37890477_37890542	0.285068	Six4	ENSMUST00000027256.5|Mrpl30|ENSMUSG00000026087.5|mitochondrial ribosomal protein L30
mm10_v2_chr7_+_38183787_38183869	0.251892	Six4	ENSMUST00000067854.8|1600014C10Rik|ENSMUSG00000054676.9|RIKEN cDNA 1600014C10 gene 	ENSMUST00000177983.1|1600014C10Rik|ENSMUSG00000054676.9|RIKEN cDNA 1600014C10 gene
mm10_v2_chr17_-_48409729_48409906	0.243018	Six4	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr12_-_21417356_21417436	0.230178	Six4	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr6_+_149130170_149130170	0.226107	Six4	ENSMUST00000087348.3|Gm10203|ENSMUSG00000067292.3|predicted gene 10203
mm10_v2_chr19_-_38224096_38224183	0.212974	Six4	ENSMUST00000067167.5|Fra10ac1|ENSMUSG00000054237.5|FRA10AC1 homolog (human)
mm10_v2_chr15_+_92051153_92051170	0.207197	Six4	ENSMUST00000169825.1|Cntn1|ENSMUSG00000055022.8|contactin 1
mm10_v2_chr2_-_103797617_103797662	0.19151	Six4	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr8_-_85067982_85067982	0.155322	Six4	ENSMUST00000177563.1|Gm5741|ENSMUSG00000095845.1|predicted gene 5741
mm10_v2_chr2_-_93452679_93452687	0.0989464	Six4	ENSMUST00000111257.1|Cd82|ENSMUSG00000027215.7|CD82 antigen 	ENSMUST00000145553.1|Cd82|ENSMUSG00000027215.7|CD82 antigen
mm10_v2_chrX_-_150440887_150440937	0.0904495	Six4	ENSMUST00000163233.1|Tmem29|ENSMUSG00000090483.1|transmembrane protein 29
mm10_v2_chr15_-_79834261_79834285	0.0896861	Six4	ENSMUST00000148358.1|Cbx6|ENSMUSG00000089715.5|chromobox 6
mm10_v2_chr18_-_38250558_38250607	0.0175358	Six4	ENSMUST00000181757.1|1700086O06Rik|ENSMUSG00000097080.1|RIKEN cDNA 1700086O06 gene
mm10_v2_chr9_-_57158288_57158338	0.0115544	Six4	ENSMUST00000065358.7|Commd4|ENSMUSG00000032299.9|COMM domain containing 4
mm10_v2_chr11_-_45955465_45955494	0.00660011	Six4	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
