mm10_v2_chr1_-_138842429_138842457	23.9707	Sox2	ENSMUST00000112026.2|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9 	ENSMUST00000019374.7|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9
mm10_v2_chr7_-_49636847_49636851	20.2941	Sox2	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr7_-_115824699_115824752	19.9465	Sox2	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr1_+_6734827_6734874	17.6612	Sox2	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr5_-_112228633_112228680	16.9034	Sox2	ENSMUST00000182699.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000182258.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000183036.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr7_-_116038734_116038750	16.7879	Sox2	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr9_+_118478851_118478866	16.3496	Sox2	ENSMUST00000150633.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr9_+_118478344_118478451	15.6751	Sox2	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr7_+_45216671_45216695	15.6538	Sox2	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr5_-_98030727_98030765	15.1907	Sox2	ENSMUST00000031281.9|Antxr2|ENSMUSG00000029338.9|anthrax toxin receptor 2
mm10_v2_chr10_+_26229707_26229763	14.5678	Sox2	ENSMUST00000060716.5|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3 	ENSMUST00000164660.1|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3
mm10_v2_chr1_+_6487231_6487338	14.1854	Sox2	ENSMUST00000140079.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131494.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chrX_-_143933089_143933142	13.2117	Sox2	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr14_+_61138445_61138495	13.149	Sox2	ENSMUST00000089394.3|Sacs|ENSMUSG00000048279.11|sacsin 	ENSMUST00000119509.1|Sacs|ENSMUSG00000048279.11|sacsin
mm10_v2_chr2_+_181763315_181763335	13.0661	Sox2	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr4_+_62965560_62965617	12.8991	Sox2	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr17_-_35703971_35703994	12.7896	Sox2	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr7_-_37772868_37772891	12.673	Sox2	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr6_-_56362356_56362519	12.2784	Sox2	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr3_-_75956888_75956959	12.1451	Sox2	ENSMUST00000038563.7|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000167078.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000117242.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4
mm10_v2_chr11_-_114795888_114795903	11.9005	Sox2	ENSMUST00000000206.3|Btbd17|ENSMUSG00000000202.3|BTB (POZ) domain containing 17
mm10_v2_chr4_-_63403330_63403354	11.7728	Sox2	ENSMUST00000035724.4|Akna|ENSMUSG00000039158.11|AT-hook transcription factor
mm10_v2_chr8_+_45507768_45507818	11.6605	Sox2	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr17_-_35704000_35704139	11.375	Sox2	ENSMUST00000097333.3|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000003628.6|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr1_+_136131382_136131404	11.0348	Sox2	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr5_-_112228900_112228929	10.8858	Sox2	ENSMUST00000182509.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr2_-_33942111_33942151	10.582	Sox2	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr11_+_119022962_119023104	10.5119	Sox2	ENSMUST00000026662.7|Cbx2|ENSMUSG00000025577.7|chromobox 2
mm10_v2_chr1_+_6730051_6730117	10.4434	Sox2	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr6_-_67037399_67037417	10.4094	Sox2	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr7_+_99466004_99466032	10.3145	Sox2	ENSMUST00000037359.2|Klhl35|ENSMUSG00000035298.2|kelch-like 35
mm10_v2_chr10_+_94036001_94036121	10.2072	Sox2	ENSMUST00000020208.4|Fgd6|ENSMUSG00000020021.4|FYVE, RhoGEF and PH domain containing 6
mm10_v2_chr6_+_47244359_47244417	10.1118	Sox2	ENSMUST00000060839.6|Cntnap2|ENSMUSG00000039419.10|contactin associated protein-like 2
mm10_v2_chrX_-_16911774_16911774	9.95458	Sox2	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr6_-_23248264_23248390	9.93656	Sox2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr8_-_69184177_69184240	9.9043	Sox2	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr10_+_80300997_80301050	9.82453	Sox2	ENSMUST00000140828.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2 	ENSMUST00000138909.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr2_+_146221921_146221921	9.70773	Sox2	ENSMUST00000089257.4|Insm1|ENSMUSG00000068154.4|insulinoma-associated 1
mm10_v2_chr6_+_15185456_15185563	9.67903	Sox2	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr17_+_72918298_72918316	9.42211	Sox2	ENSMUST00000024857.6|Lbh|ENSMUSG00000024063.6|limb-bud and heart
mm10_v2_chr10_+_80150448_80150482	9.35126	Sox2	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr2_-_18048347_18048449	9.2549	Sox2	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr8_+_45628176_45628219	9.21369	Sox2	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr4_+_116221590_116221618	8.87968	Sox2	ENSMUST00000147292.1|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr9_-_72111755_72111821	8.87355	Sox2	ENSMUST00000183492.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184523.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000034755.6|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr1_+_66322102_66322119	8.78868	Sox2	ENSMUST00000123647.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr14_+_31019159_31019178	8.77517	Sox2	ENSMUST00000112094.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000144009.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr7_+_45215753_45215852	8.69966	Sox2	ENSMUST00000033060.6|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000155313.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000107801.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr1_-_64122256_64122321	8.6943	Sox2	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr15_+_25622525_25622558	8.69173	Sox2	ENSMUST00000110457.1|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000137601.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr2_+_124610573_124610613	8.62722	Sox2	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr2_+_68861564_68861586	8.56737	Sox2	ENSMUST00000176018.1|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr1_-_139377094_139377110	8.56263	Sox2	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr1_+_133246092_133246099	8.47303	Sox2	ENSMUST00000038295.8|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6 	ENSMUST00000105082.2|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6
mm10_v2_chr3_-_108402589_108402589	8.42837	Sox2	ENSMUST00000147565.1|Celsr2|ENSMUSG00000068740.7|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm10_v2_chr17_-_35704574_35704632	8.39232	Sox2	ENSMUST00000117301.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000134995.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr5_+_75574916_75575001	8.35535	Sox2	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr4_-_32923455_32923530	8.30669	Sox2	ENSMUST00000035719.4|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084749.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr1_-_12991109_12991177	8.20234	Sox2	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr17_-_35697971_35698001	8.17339	Sox2	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr14_+_31019183_31019214	8.14405	Sox2	ENSMUST00000052239.5|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr17_-_56476462_56476483	8.0926	Sox2	ENSMUST00000067538.5|Ptprs|ENSMUSG00000013236.10|protein tyrosine phosphatase, receptor type, S
mm10_v2_chr1_+_6730135_6730176	8.0358	Sox2	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr4_+_9269285_9269335	8.01664	Sox2	ENSMUST00000038841.7|Clvs1|ENSMUSG00000041216.9|clavesin 1
mm10_v2_chr4_-_20778527_20778593	8.00223	Sox2	ENSMUST00000119374.1|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr9_-_75409951_75410039	7.94495	Sox2	ENSMUST00000049355.10|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr2_-_84775420_84775444	7.87137	Sox2	ENSMUST00000111641.1|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr7_-_115846080_115846112	7.79921	Sox2	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr11_-_19018956_19018973	7.77607	Sox2	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr7_+_112679327_112679373	7.7483	Sox2	ENSMUST00000106638.2|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr7_-_37769624_37769677	7.70614	Sox2	ENSMUST00000175941.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr6_-_38875965_38875986	7.66921	Sox2	ENSMUST00000160360.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr8_+_34807287_34807310	7.6425	Sox2	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr14_+_73237891_73238007	7.62961	Sox2	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr13_-_97747399_97747414	7.46037	Sox2	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr1_+_135584773_135584773	7.41923	Sox2	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr3_+_102010138_102010171	7.40919	Sox2	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr12_-_101028983_101029042	7.30885	Sox2	ENSMUST00000068411.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C 	ENSMUST00000085096.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C
mm10_v2_chr19_-_30175414_30175436	7.29898	Sox2	ENSMUST00000025778.7|Gldc|ENSMUSG00000024827.9|glycine decarboxylase
mm10_v2_chr9_+_74976096_74976177	7.27027	Sox2	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr7_-_103853199_103853240	7.25864	Sox2	ENSMUST00000033229.3|Hbb-y|ENSMUSG00000052187.3|hemoglobin Y, beta-like embryonic chain
mm10_v2_chr9_-_72111827_72111895	7.23489	Sox2	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr5_-_112228934_112228975	7.21394	Sox2	ENSMUST00000181535.2|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr6_+_65042575_65042667	7.20177	Sox2	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr9_-_72111651_72111712	7.14602	Sox2	ENSMUST00000185117.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr10_+_80151154_80151375	7.12931	Sox2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr3_-_84040151_84040171	7.03271	Sox2	ENSMUST00000052342.7|D930015E06Rik|ENSMUSG00000033767.9|RIKEN cDNA D930015E06 gene
mm10_v2_chr12_-_34528844_34528904	6.9913	Sox2	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr3_+_131110350_131110471	6.81718	Sox2	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr14_+_60378242_60378292	6.81146	Sox2	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr2_-_18048784_18048822	6.7712	Sox2	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr14_+_31019125_31019157	6.75317	Sox2	ENSMUST00000112095.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000112098.3|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000112106.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000146325.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr2_+_155381808_155381884	6.73413	Sox2	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr8_+_94977101_94977123	6.69592	Sox2	ENSMUST00000179619.1|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr18_-_46212595_46212634	6.67905	Sox2	ENSMUST00000037011.4|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr2_+_102706356_102706438	6.65267	Sox2	ENSMUST00000123759.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000111212.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000005220.4|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr2_-_151973387_151973399	6.63722	Sox2	ENSMUST00000109863.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr2_-_51149100_51149115	6.63633	Sox2	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr4_+_116221689_116221698	6.62167	Sox2	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr19_-_4334001_4334031	6.61323	Sox2	ENSMUST00000176653.1|Kdm2a|ENSMUSG00000054611.10|lysine (K)-specific demethylase 2A
mm10_v2_chr4_-_82705735_82705754	6.60988	Sox2	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr5_-_124352233_124352302	6.55653	Sox2	ENSMUST00000111472.1|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr12_+_76072016_76072079	6.54554	Sox2	ENSMUST00000131480.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr9_-_50727921_50728008	6.54323	Sox2	ENSMUST00000118707.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000034566.8|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr17_-_35701937_35701964	6.51805	Sox2	ENSMUST00000155628.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr8_-_122699066_122699119	6.48015	Sox2	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr9_+_109095427_109095453	6.43301	Sox2	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr17_+_80944611_80944644	6.41715	Sox2	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr10_-_60831571_60831588	6.37642	Sox2	ENSMUST00000077925.5|Unc5b|ENSMUSG00000020099.7|unc-5 homolog B (C. elegans)
mm10_v2_chr11_+_78301529_78301606	6.35929	Sox2	ENSMUST00000045026.3|Spag5|ENSMUSG00000002055.3|sperm associated antigen 5
mm10_v2_chr11_-_90638062_90638100	6.35795	Sox2	ENSMUST00000020858.7|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107875.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107872.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000143203.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4
mm10_v2_chr18_-_84086379_84086404	6.32353	Sox2	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr10_-_29144194_29144194	6.31974	Sox2	ENSMUST00000070359.2|Gm9996|ENSMUSG00000056316.2|predicted gene 9996
mm10_v2_chr11_-_96005872_96005952	6.31149	Sox2	ENSMUST00000013559.2|Igf2bp1|ENSMUSG00000013415.3|insulin-like growth factor 2 mRNA binding protein 1
mm10_v2_chr1_+_62703667_62703702	6.30054	Sox2	ENSMUST00000114155.1|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000027112.6|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000063594.6|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000114157.2|Nrp2|ENSMUSG00000025969.9|neuropilin 2
mm10_v2_chr12_+_24708984_24709029	6.27263	Sox2	ENSMUST00000154588.1|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr1_-_182019927_182019989	6.26835	Sox2	ENSMUST00000078719.6|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111030.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000177811.1|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111024.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111025.2|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila)
mm10_v2_chrX_-_143933204_143933311	6.24237	Sox2	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr5_-_44099220_44099237	6.2306	Sox2	ENSMUST00000165909.1|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr3_+_88615367_88615434	6.21087	Sox2	ENSMUST00000176539.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr9_+_119402444_119402501	6.19979	Sox2	ENSMUST00000035093.8|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB 	ENSMUST00000165044.1|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB
mm10_v2_chr10_+_79996479_79996505	6.18834	Sox2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr5_-_131538687_131538717	6.1745	Sox2	ENSMUST00000161374.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr4_-_135272798_135272819	6.1383	Sox2	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr2_-_79456750_79456761	6.10965	Sox2	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr11_-_19018714_19018828	6.10112	Sox2	ENSMUST00000177417.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr18_-_88927447_88927481	6.09247	Sox2	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr2_-_151973840_151973966	6.08655	Sox2	ENSMUST00000109865.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A 	ENSMUST00000109864.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr15_-_39943963_39944029	6.06779	Sox2	ENSMUST00000110305.2|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr2_-_160367057_160367073	6.02899	Sox2	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr9_-_75409352_75409383	6.02	Sox2	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr17_+_43801823_43801863	5.96972	Sox2	ENSMUST00000044895.5|Rcan2|ENSMUSG00000039601.9|regulator of calcineurin 2
mm10_v2_chr9_-_50728067_50728129	5.89922	Sox2	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr15_-_91049823_91049948	5.87768	Sox2	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr3_-_38484831_38484864	5.85449	Sox2	ENSMUST00000120875.1|Ankrd50|ENSMUSG00000044864.10|ankyrin repeat domain 50
mm10_v2_chr7_+_75643223_75643319	5.84409	Sox2	ENSMUST00000137959.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr2_+_155382186_155382274	5.83405	Sox2	ENSMUST00000134218.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr6_+_128375456_128375456	5.75411	Sox2	ENSMUST00000100926.2|4933413G19Rik|ENSMUSG00000079304.3|RIKEN cDNA 4933413G19 gene
mm10_v2_chr7_+_100493337_100493370	5.72909	Sox2	ENSMUST00000126534.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr10_+_29143996_29144126	5.70067	Sox2	ENSMUST00000092629.2|Soga3|ENSMUSG00000038916.6|SOGA family member 3
mm10_v2_chr4_-_34882919_34882964	5.69691	Sox2	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr12_-_54986328_54986342	5.6664	Sox2	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr6_+_83137089_83137121	5.64298	Sox2	ENSMUST00000121093.1|Rtkn|ENSMUSG00000034930.9|rhotekin 	ENSMUST00000087938.4|Rtkn|ENSMUSG00000034930.9|rhotekin
mm10_v2_chr13_-_95618442_95618475	5.60388	Sox2	ENSMUST00000059193.5|F2r|ENSMUSG00000048376.5|coagulation factor II (thrombin) receptor
mm10_v2_chr7_-_105787544_105787555	5.58563	Sox2	ENSMUST00000078482.5|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila) 	ENSMUST00000154659.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chr15_-_84855093_84855127	5.58483	Sox2	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr2_+_52857844_52857868	5.57448	Sox2	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chr18_-_47368446_47368486	5.5731	Sox2	ENSMUST00000076043.6|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000135790.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr17_+_35866056_35866085	5.55071	Sox2	ENSMUST00000122899.1|Ppp1r18|ENSMUSG00000034595.11|protein phosphatase 1, regulatory subunit 18
mm10_v2_chr18_+_82914632_82914664	5.50066	Sox2	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr11_+_3289168_3289281	5.46017	Sox2	ENSMUST00000134089.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr17_-_29007925_29007962	5.45438	Sox2	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr4_+_59626189_59626253	5.45318	Sox2	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr4_-_155043143_155043172	5.44214	Sox2	ENSMUST00000135665.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chrX_+_38189829_38189842	5.42611	Sox2	ENSMUST00000131124.1|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr2_+_15055274_15055379	5.40735	Sox2	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr13_-_54687644_54687688	5.38737	Sox2	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr17_+_52602700_52602717	5.29817	Sox2	ENSMUST00000039366.10|Kcnh8|ENSMUSG00000035580.10|potassium voltage-gated channel, subfamily H (eag-related), member 8
mm10_v2_chr17_-_70851189_70851216	5.2761	Sox2	ENSMUST00000059775.8|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr4_+_48585276_48585365	5.26364	Sox2	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr8_+_70863127_70863127	5.24094	Sox2	ENSMUST00000050921.2|A230052G05Rik|ENSMUSG00000020887.3|RIKEN cDNA A230052G05 gene
mm10_v2_chr1_+_153749496_153749523	5.20825	Sox2	ENSMUST00000182722.1|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr4_+_116221633_116221661	5.18511	Sox2	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr2_-_60125651_60125775	5.16168	Sox2	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr1_-_55226768_55226813	5.15678	Sox2	ENSMUST00000027121.8|Rftn2|ENSMUSG00000025978.8|raftlin family member 2 	ENSMUST00000114428.2|Rftn2|ENSMUSG00000025978.8|raftlin family member 2
mm10_v2_chr5_+_90931196_90931311	5.14807	Sox2	ENSMUST00000071652.4|Mthfd2l|ENSMUSG00000029376.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm10_v2_chr13_-_97747373_97747384	5.132	Sox2	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr12_+_80790532_80790574	5.12545	Sox2	ENSMUST00000068519.5|4933426M11Rik|ENSMUSG00000021133.8|RIKEN cDNA 4933426M11 gene
mm10_v2_chr2_+_68861433_68861510	5.09365	Sox2	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr8_-_122678072_122678182	5.09299	Sox2	ENSMUST00000006525.7|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) 	ENSMUST00000064674.6|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr9_-_122903102_122903184	5.08641	Sox2	ENSMUST00000180877.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene 	ENSMUST00000180486.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene
mm10_v2_chr12_-_54986363_54986529	5.08067	Sox2	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr2_+_156840966_156841017	5.0757	Sox2	ENSMUST00000109564.1|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr13_-_8858762_8858829	5.06896	Sox2	ENSMUST00000176329.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr14_+_14703025_14703073	5.04167	Sox2	ENSMUST00000057015.6|Slc4a7|ENSMUSG00000021733.9|solute carrier family 4, sodium bicarbonate cotransporter, member 7
mm10_v2_chr15_-_79658749_79658798	5.02333	Sox2	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr14_+_25607797_25607838	5.0219	Sox2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr6_-_42693030_42693070	5.01591	Sox2	ENSMUST00000045140.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr14_+_59201418_59201503	5.01253	Sox2	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr14_-_62456286_62456289	5.00738	Sox2	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr9_+_102718424_102718490	5.00527	Sox2	ENSMUST00000156485.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000145937.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000134483.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chrX_-_12128350_12128367	4.99736	Sox2	ENSMUST00000123004.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr2_-_130839683_130839696	4.9732	Sox2	ENSMUST00000119422.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr9_+_108826320_108826320	4.95927	Sox2	ENSMUST00000024238.5|Celsr3|ENSMUSG00000023473.6|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
mm10_v2_chr4_-_110290884_110290913	4.94045	Sox2	ENSMUST00000142722.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr4_-_148130678_148130706	4.9121	Sox2	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr2_+_126552407_126552407	4.90914	Sox2	ENSMUST00000061491.7|Slc27a2|ENSMUSG00000027359.10|solute carrier family 27 (fatty acid transporter), member 2
mm10_v2_chr9_+_58134535_58134810	4.9062	Sox2	ENSMUST00000128378.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000150820.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000167479.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000134450.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr9_-_58313189_58313212	4.90598	Sox2	ENSMUST00000061799.8|Loxl1|ENSMUSG00000032334.9|lysyl oxidase-like 1
mm10_v2_chr16_+_20097554_20097596	4.88082	Sox2	ENSMUST00000023509.3|Klhl24|ENSMUSG00000062901.2|kelch-like 24
mm10_v2_chr5_-_50058908_50059010	4.85206	Sox2	ENSMUST00000030971.5|Gpr125|ENSMUSG00000029090.8|G protein-coupled receptor 125
mm10_v2_chr6_-_86733218_86733256	4.84572	Sox2	ENSMUST00000113679.1|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr11_+_62077018_62077101	4.84327	Sox2	ENSMUST00000092415.5|Specc1|ENSMUSG00000042331.7|sperm antigen with calponin homology and coiled-coil domains 1
mm10_v2_chr17_+_43667389_43667425	4.81615	Sox2	ENSMUST00000170988.1|Cyp39a1|ENSMUSG00000023963.9|cytochrome P450, family 39, subfamily a, polypeptide 1
mm10_v2_chr12_+_24708241_24708292	4.81306	Sox2	ENSMUST00000020980.5|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr9_+_45430293_45430379	4.79549	Sox2	ENSMUST00000034592.8|Dscaml1|ENSMUSG00000032087.9|Down syndrome cell adhesion molecule like 1
mm10_v2_chr3_+_88621436_88621555	4.73996	Sox2	ENSMUST00000170653.2|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000177303.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr18_+_64340225_64340364	4.71882	Sox2	ENSMUST00000175965.2|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2 	ENSMUST00000115145.3|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2
mm10_v2_chr11_+_3649759_3649759	4.71362	Sox2	ENSMUST00000140242.1|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr7_+_112679314_112679325	4.69388	Sox2	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr8_+_127064022_127064086	4.67535	Sox2	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr10_+_17723220_17723229	4.67379	Sox2	ENSMUST00000038107.7|Cited2|ENSMUSG00000039910.9|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm10_v2_chr15_+_100038635_100038669	4.67342	Sox2	ENSMUST00000100203.3|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr8_+_31111816_31111891	4.65721	Sox2	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr6_-_148944750_148944826	4.64244	Sox2	ENSMUST00000111562.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A 	ENSMUST00000081956.5|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr6_-_38876163_38876234	4.62806	Sox2	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr6_-_42693087_42693100	4.62647	Sox2	ENSMUST00000121083.1|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr12_+_52699297_52699411	4.61353	Sox2	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr2_-_153241402_153241426	4.56001	Sox2	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr2_+_181767283_181767322	4.53461	Sox2	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr2_+_181767040_181767073	4.51858	Sox2	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr2_-_77280589_77280648	4.50665	Sox2	ENSMUST00000102659.1|Sestd1|ENSMUSG00000042272.11|SEC14 and spectrin domains 1
mm10_v2_chr5_+_3928033_3928178	4.49943	Sox2	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr10_+_69706326_69706382	4.49932	Sox2	ENSMUST00000182992.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_+_150281573_150281646	4.4971	Sox2	ENSMUST00000105682.2|Rere|ENSMUSG00000039852.10|arginine glutamic acid dipeptide (RE) repeats
mm10_v2_chrX_-_12128386_12128412	4.48885	Sox2	ENSMUST00000145872.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr1_+_15287259_15287259	4.48817	Sox2	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr4_+_128727585_128727710	4.48405	Sox2	ENSMUST00000106079.3|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000133439.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr8_+_35587780_35587825	4.46754	Sox2	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr5_+_105415738_105415849	4.45956	Sox2	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr1_+_66321708_66321719	4.44799	Sox2	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr2_-_25983056_25983154	4.39954	Sox2	ENSMUST00000127823.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000134882.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr19_+_5740885_5740904	4.35113	Sox2	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr11_+_114851814_114851880	4.34323	Sox2	ENSMUST00000053361.5|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C 	ENSMUST00000021071.7|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C 	ENSMUST00000136785.1|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C
mm10_v2_chr4_-_110292719_110292732	4.3151	Sox2	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr5_+_138116903_138117041	4.3001	Sox2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr1_-_60566708_60566769	4.29943	Sox2	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr1_-_51915901_51915958	4.28828	Sox2	ENSMUST00000018561.7|Myo1b|ENSMUSG00000018417.8|myosin IB 	ENSMUST00000114537.2|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr1_-_139377041_139377078	4.28636	Sox2	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr7_-_120982260_120982312	4.28386	Sox2	ENSMUST00000033169.8|Cdr2|ENSMUSG00000030878.10|cerebellar degeneration-related 2
mm10_v2_chr3_-_123690806_123690847	4.28163	Sox2	ENSMUST00000154668.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr1_+_171250416_171250433	4.27815	Sox2	ENSMUST00000111315.1|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 	ENSMUST00000006570.5|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm10_v2_chr18_-_47368830_47368878	4.27155	Sox2	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr12_-_73113407_73113456	4.26896	Sox2	ENSMUST00000175693.1|Six4|ENSMUSG00000034460.8|sine oculis-related homeobox 4
mm10_v2_chr6_+_61180313_61180400	4.2632	Sox2	ENSMUST00000126214.1|Ccser1|ENSMUSG00000039578.10|coiled-coil serine rich 1
mm10_v2_chr13_-_98926374_98926389	4.26212	Sox2	ENSMUST00000109401.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr16_-_23225334_23225368	4.25104	Sox2	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr5_-_28210022_28210034	4.21226	Sox2	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr1_+_153749414_153749442	4.20771	Sox2	ENSMUST00000086209.3|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr7_+_82867327_82867357	4.20255	Sox2	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr6_+_34598500_34598529	4.19439	Sox2	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr17_-_35000848_35000958	4.19153	Sox2	ENSMUST00000166828.3|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr18_-_23038656_23038676	4.16583	Sox2	ENSMUST00000081423.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr10_+_80148263_80148279	4.16497	Sox2	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr8_+_127064107_127064347	4.16467	Sox2	ENSMUST00000162536.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000026921.6|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162665.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160766.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162602.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162531.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160581.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000161355.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000159537.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr12_-_98737405_98737515	4.15351	Sox2	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr3_-_84270782_84270794	4.14182	Sox2	ENSMUST00000054990.4|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr7_-_105787567_105787654	4.13822	Sox2	ENSMUST00000144189.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chr12_+_29938036_29938059	4.11729	Sox2	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr7_+_100493795_100493848	4.10255	Sox2	ENSMUST00000129324.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr1_-_190169399_190169526	4.10114	Sox2	ENSMUST00000010319.7|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chrX_-_23285532_23285578	4.07035	Sox2	ENSMUST00000115319.2|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr7_-_132317198_132317228	4.06722	Sox2	ENSMUST00000080215.5|Chst15|ENSMUSG00000030930.7|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm10_v2_chr4_-_130574150_130574237	4.05935	Sox2	ENSMUST00000105993.3|Nkain1|ENSMUSG00000078532.3|Na+/K+ transporting ATPase interacting 1
mm10_v2_chr4_-_91376433_91376477	4.05884	Sox2	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chrX_-_23365044_23365090	4.05688	Sox2	ENSMUST00000115313.1|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr17_-_25273155_25273265	4.05486	Sox2	ENSMUST00000173231.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr8_-_84237042_84237061	4.03959	Sox2	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr13_-_49147931_49148037	4.03808	Sox2	ENSMUST00000162581.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110097.2|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000049265.8|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000035538.6|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110096.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000091623.3|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2
mm10_v2_chr10_-_8518801_8518851	4.01359	Sox2	ENSMUST00000061601.7|Ust|ENSMUSG00000047712.7|uronyl-2-sulfotransferase
mm10_v2_chr13_+_88821472_88821520	4.00976	Sox2	ENSMUST00000118731.1|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3 	ENSMUST00000081769.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr15_-_39943689_39943788	3.99129	Sox2	ENSMUST00000022916.5|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr7_+_28180226_28180266	3.98161	Sox2	ENSMUST00000172467.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr5_+_44100442_44100442	3.97648	Sox2	ENSMUST00000072800.4|Gm16401|ENSMUSG00000072962.2|predicted gene 16401
mm10_v2_chr16_+_43508118_43508263	3.96915	Sox2	ENSMUST00000114690.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr4_+_155839675_155839684	3.96908	Sox2	ENSMUST00000141883.1|Mxra8|ENSMUSG00000029070.3|matrix-remodelling associated 8
mm10_v2_chr9_+_56041857_56041880	3.96795	Sox2	ENSMUST00000114276.2|Rcn2|ENSMUSG00000032320.7|reticulocalbin 2
mm10_v2_chr6_+_127887582_127887639	3.94406	Sox2	ENSMUST00000032501.4|Tspan11|ENSMUSG00000030351.4|tetraspanin 11
mm10_v2_chr12_+_75818294_75818356	3.94074	Sox2	ENSMUST00000143031.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000044217.9|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000150317.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr8_-_119840522_119840579	3.93841	Sox2	ENSMUST00000168698.1|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium) 	ENSMUST00000034285.6|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium)
mm10_v2_chr4_+_155839724_155839762	3.92597	Sox2	ENSMUST00000030947.3|Mxra8|ENSMUSG00000029070.3|matrix-remodelling associated 8
mm10_v2_chr16_-_50432340_50432409	3.90693	Sox2	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr7_+_127233227_127233317	3.89356	Sox2	ENSMUST00000056232.6|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chrX_+_38189780_38189826	3.88016	Sox2	ENSMUST00000049740.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33 	ENSMUST00000115142.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr6_+_34598530_34598587	3.87917	Sox2	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr16_+_27388869_27388980	3.87579	Sox2	ENSMUST00000100026.3|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000039443.7|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000096127.4|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50
mm10_v2_chr4_+_136172367_136172395	3.8503	Sox2	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chrX_+_13071470_13071499	3.83313	Sox2	ENSMUST00000169594.2|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr4_-_126468580_126468653	3.83181	Sox2	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr2_-_114052804_114052887	3.8183	Sox2	ENSMUST00000090269.6|Actc1|ENSMUSG00000068614.7|actin, alpha, cardiac muscle 1
mm10_v2_chr16_+_23224724_23224804	3.80283	Sox2	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr7_+_64501949_64502048	3.79429	Sox2	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr5_+_124862674_124862771	3.77933	Sox2	ENSMUST00000111417.2|Zfp664|ENSMUSG00000079215.2|zinc finger protein 664
mm10_v2_chr16_+_17451981_17452034	3.7737	Sox2	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr6_-_47594967_47595047	3.77268	Sox2	ENSMUST00000081721.6|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114618.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114616.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila)
mm10_v2_chr11_-_78165521_78165589	3.76523	Sox2	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr8_-_41054771_41054802	3.76117	Sox2	ENSMUST00000093534.4|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr18_+_24205937_24206002	3.7502	Sox2	ENSMUST00000164998.1|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr5_+_35893319_35893426	3.73992	Sox2	ENSMUST00000064571.4|Afap1|ENSMUSG00000029094.5|actin filament associated protein 1
mm10_v2_chr1_-_51915968_51916071	3.7205	Sox2	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr1_-_97761538_97761609	3.71887	Sox2	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr1_+_139454747_139454825	3.71545	Sox2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr4_-_91376490_91376502	3.70168	Sox2	ENSMUST00000107124.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr1_+_133045984_133046082	3.69743	Sox2	ENSMUST00000077730.5|Pik3c2b|ENSMUSG00000026447.10|phosphoinositide-3-kinase, class 2, beta polypeptide
mm10_v2_chr15_+_88751649_88751661	3.69212	Sox2	ENSMUST00000041297.8|Zbed4|ENSMUSG00000034333.9|zinc finger, BED domain containing 4
mm10_v2_chr13_-_13393592_13393624	3.69144	Sox2	ENSMUST00000021738.8|Gpr137b|ENSMUSG00000021306.10|G protein-coupled receptor 137B
mm10_v2_chr4_+_141010644_141010696	3.67518	Sox2	ENSMUST00000071977.8|Mfap2|ENSMUSG00000060572.11|microfibrillar-associated protein 2
mm10_v2_chr18_-_77565050_77565162	3.64996	Sox2	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr15_-_79658889_79658956	3.64752	Sox2	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr4_+_54945038_54945082	3.6385	Sox2	ENSMUST00000133895.1|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr4_-_81442756_81442836	3.62885	Sox2	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chr2_-_181599128_181599235	3.62877	Sox2	ENSMUST00000060173.8|Samd10|ENSMUSG00000038605.11|sterile alpha motif domain containing 10
mm10_v2_chr16_-_96082389_96082481	3.62032	Sox2	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr14_-_72602945_72603003	3.6101	Sox2	ENSMUST00000162825.1|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr12_+_110601439_110601452	3.59839	Sox2	ENSMUST00000018851.7|Dync1h1|ENSMUSG00000018707.7|dynein cytoplasmic 1 heavy chain 1
mm10_v2_chr7_-_37773555_37773641	3.5876	Sox2	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr17_-_12769605_12769700	3.57191	Sox2	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr19_+_40831296_40831313	3.56237	Sox2	ENSMUST00000119316.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr7_+_64502090_64502155	3.56166	Sox2	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr3_-_17786834_17786898	3.5568	Sox2	ENSMUST00000099198.2|Gm10742|ENSMUSG00000074674.2|predicted gene 10742
mm10_v2_chr1_-_14310198_14310218	3.55392	Sox2	ENSMUST00000168081.2|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila) 	ENSMUST00000027066.6|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila)
mm10_v2_chr10_-_92162753_92162765	3.53219	Sox2	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr1_+_158362330_158362411	3.52888	Sox2	ENSMUST00000170718.1|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr13_-_103920295_103920367	3.51027	Sox2	ENSMUST00000169083.1|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr13_+_88821606_88821642	3.46195	Sox2	ENSMUST00000043111.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr11_+_43528759_43528796	3.45968	Sox2	ENSMUST00000050574.6|Ccnjl|ENSMUSG00000044707.7|cyclin J-like
mm10_v2_chr5_-_38684743_38684826	3.45683	Sox2	ENSMUST00000057258.4|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000178760.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000179555.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000180214.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B
mm10_v2_chr2_+_118900377_118900397	3.45054	Sox2	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr14_+_69029289_69029414	3.44019	Sox2	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr13_-_47043116_47043343	3.4388	Sox2	ENSMUST00000110118.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000124948.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000021806.3|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000136864.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase
mm10_v2_chr8_+_87472805_87472822	3.43755	Sox2	ENSMUST00000180700.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000182174.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000181159.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr3_+_40745332_40745382	3.4256	Sox2	ENSMUST00000159819.1|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr14_-_55092277_55092324	3.42079	Sox2	ENSMUST00000036328.8|Zfhx2|ENSMUSG00000040721.8|zinc finger homeobox 2
mm10_v2_chr11_+_94044111_94044121	3.41176	Sox2	ENSMUST00000132079.1|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr2_-_165898951_165899016	3.40593	Sox2	ENSMUST00000136842.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr1_+_165788746_165788769	3.40165	Sox2	ENSMUST00000161559.2|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr4_+_48585135_48585187	3.39555	Sox2	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr16_+_43503607_43503642	3.3911	Sox2	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr11_+_20647149_20647156	3.38925	Sox2	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr2_-_20968526_20968625	3.38391	Sox2	ENSMUST00000141298.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21 	ENSMUST00000125783.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr8_+_87472838_87472849	3.36051	Sox2	ENSMUST00000180806.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr10_+_37139558_37139558	3.3504	Sox2	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr10_-_122047293_122047322	3.34819	Sox2	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chr4_-_148287927_148287965	3.34327	Sox2	ENSMUST00000047720.8|Ptchd2|ENSMUSG00000041544.11|patched domain containing 2
mm10_v2_chr10_-_49788743_49788769	3.33851	Sox2	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr13_-_54565299_54565362	3.32628	Sox2	ENSMUST00000153065.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000126295.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000143144.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000132136.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr10_+_69925484_69925532	3.32559	Sox2	ENSMUST00000182692.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092433.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr2_-_27475600_27475611	3.29735	Sox2	ENSMUST00000147736.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr16_-_34513944_34514056	3.29707	Sox2	ENSMUST00000151491.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114960.2|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chrX_-_105929333_105929382	3.29472	Sox2	ENSMUST00000134507.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000137453.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000150914.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr1_+_165788681_165788728	3.28897	Sox2	ENSMUST00000161971.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000178336.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000005907.5|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000027849.4|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr4_-_149307506_149307703	3.27726	Sox2	ENSMUST00000055647.8|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000030806.5|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000060537.6|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B
mm10_v2_chr4_-_97584605_97584610	3.26575	Sox2	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr3_-_107931579_107931742	3.26555	Sox2	ENSMUST00000133947.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000124215.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106688.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106687.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr4_-_129227883_129227923	3.26314	Sox2	ENSMUST00000106051.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr4_-_11254248_11254266	3.25831	Sox2	ENSMUST00000044616.3|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108319.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108318.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8
mm10_v2_chr5_-_22344690_22344710	3.24823	Sox2	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr4_+_107830958_107830985	3.24774	Sox2	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr8_+_127063893_127063916	3.23518	Sox2	ENSMUST00000162309.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr10_-_80421847_80421876	3.2328	Sox2	ENSMUST00000156244.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chr6_-_86733268_86733394	3.23134	Sox2	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr11_-_46312220_46312358	3.22801	Sox2	ENSMUST00000129474.1|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000093166.4|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000165599.2|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2
mm10_v2_chr11_+_83964419_83964478	3.22526	Sox2	ENSMUST00000049714.8|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000092834.5|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183714.1|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183456.1|Synrg|ENSMUSG00000034940.9|synergin, gamma
mm10_v2_chr5_+_104775911_104775911	3.20743	Sox2	ENSMUST00000055593.7|Gm8258|ENSMUSG00000048334.7|predicted gene 8258
mm10_v2_chr17_+_32506446_32506473	3.19977	Sox2	ENSMUST00000165999.1|Cyp4f17|ENSMUSG00000091586.1|cytochrome P450, family 4, subfamily f, polypeptide 17
mm10_v2_chrX_+_109095359_109095391	3.16279	Sox2	ENSMUST00000033598.8|Sh3bgrl|ENSMUSG00000031246.8|SH3-binding domain glutamic acid-rich protein like
mm10_v2_chr10_+_69925800_69925824	3.13596	Sox2	ENSMUST00000182029.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_-_20778852_20778876	3.12595	Sox2	ENSMUST00000102998.3|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr13_-_75943812_75943950	3.12474	Sox2	ENSMUST00000022078.5|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3 	ENSMUST00000109606.1|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3
mm10_v2_chr18_+_23954668_23954704	3.12376	Sox2	ENSMUST00000060762.4|Zfp397|ENSMUSG00000024276.6|zinc finger protein 397
mm10_v2_chr9_+_96259246_96259261	3.12302	Sox2	ENSMUST00000179065.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000165768.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr8_-_4217459_4217503	3.12212	Sox2	ENSMUST00000176227.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr9_-_105495037_105495117	3.11745	Sox2	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr7_+_141949846_141949868	3.11423	Sox2	ENSMUST00000172652.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr18_-_88894203_88894216	3.11068	Sox2	ENSMUST00000123826.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr11_-_31370066_31370080	3.08668	Sox2	ENSMUST00000020546.2|Stc2|ENSMUSG00000020303.2|stanniocalcin 2
mm10_v2_chr3_+_32708546_32708738	3.07336	Sox2	ENSMUST00000029214.7|Actl6a|ENSMUSG00000027671.8|actin-like 6A
mm10_v2_chr17_-_25433263_25433307	3.06479	Sox2	ENSMUST00000159623.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr16_-_34514084_34514128	3.05564	Sox2	ENSMUST00000089655.5|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr5_-_138155694_138155744	3.0506	Sox2	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr5_-_102069905_102069940	3.04866	Sox2	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr6_-_83121385_83121559	3.04285	Sox2	ENSMUST00000146328.1|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1 	ENSMUST00000113936.3|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1 	ENSMUST00000032111.4|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1
mm10_v2_chr15_+_82275197_82275281	3.02173	Sox2	ENSMUST00000116423.1|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chrX_-_105929206_105929321	2.98635	Sox2	ENSMUST00000134381.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000154866.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr5_+_92137896_92137939	2.97985	Sox2	ENSMUST00000031355.6|Uso1|ENSMUSG00000029407.7|USO1 vesicle docking factor
mm10_v2_chr4_+_48585193_48585215	2.96686	Sox2	ENSMUST00000107703.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr5_-_148928619_148928659	2.95427	Sox2	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr11_+_60699758_60699845	2.95417	Sox2	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr7_-_123369870_123369920	2.94751	Sox2	ENSMUST00000106442.2|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000098060.3|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000167309.1|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17
mm10_v2_chr10_+_67096456_67096534	2.94209	Sox2	ENSMUST00000174317.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr1_+_66386968_66386999	2.94209	Sox2	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr2_-_165884636_165884874	2.93429	Sox2	ENSMUST00000177633.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8 	ENSMUST00000018050.7|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8 	ENSMUST00000088113.4|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr1_+_180641330_180641374	2.92645	Sox2	ENSMUST00000085804.5|Lin9|ENSMUSG00000058729.7|lin-9 homolog (C. elegans)
mm10_v2_chr8_-_4216912_4217003	2.9178	Sox2	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr10_+_69925766_69925786	2.91717	Sox2	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr19_+_40831248_40831292	2.91658	Sox2	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr6_-_114921778_114921837	2.914	Sox2	ENSMUST00000032459.7|Vgll4|ENSMUSG00000030315.9|vestigial like 4 (Drosophila)
mm10_v2_chr12_-_45074112_45074306	2.91396	Sox2	ENSMUST00000120531.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn) 	ENSMUST00000143376.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chr11_+_93886157_93886219	2.90851	Sox2	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr1_+_161142706_161142767	2.89737	Sox2	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr2_-_156111863_156111943	2.89459	Sox2	ENSMUST00000154889.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000079312.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000153634.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000133921.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000131377.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000183518.1|RP23-220D12.12|ENSMUSG00000098950.1|RNA-binding protein 12  	ENSMUST00000184265.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109607.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109608.2|Cpne1|ENSMUSG00000074643.6|copine I
mm10_v2_chr13_-_54565368_54565435	2.88964	Sox2	ENSMUST00000026989.8|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr17_+_53566971_53567023	2.87172	Sox2	ENSMUST00000000724.8|Kat2b|ENSMUSG00000000708.8|K(lysine) acetyltransferase 2B
mm10_v2_chr11_+_115765420_115765466	2.86628	Sox2	ENSMUST00000093912.4|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000136720.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000103034.3|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000141871.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene
mm10_v2_chr4_+_108459389_108459451	2.86263	Sox2	ENSMUST00000106673.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11 	ENSMUST00000043368.5|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr8_-_111910171_111910199	2.86064	Sox2	ENSMUST00000034430.4|Chst5|ENSMUSG00000031952.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
mm10_v2_chr9_+_21616230_21616281	2.85301	Sox2	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr12_-_83921809_83921898	2.85139	Sox2	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr19_-_3686549_3686586	2.8488	Sox2	ENSMUST00000025856.10|Lrp5|ENSMUSG00000024913.10|low density lipoprotein receptor-related protein 5 	ENSMUST00000176867.1|Lrp5|ENSMUSG00000024913.10|low density lipoprotein receptor-related protein 5
mm10_v2_chr11_-_70220794_70220832	2.84424	Sox2	ENSMUST00000159867.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr2_+_92185438_92185463	2.83114	Sox2	ENSMUST00000128781.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr14_-_49783327_49783394	2.81996	Sox2	ENSMUST00000118129.1|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene 	ENSMUST00000036972.6|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene
mm10_v2_chr5_+_108065742_108065767	2.80904	Sox2	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr7_+_101969796_101969843	2.80694	Sox2	ENSMUST00000084852.5|Numa1|ENSMUSG00000066306.6|nuclear mitotic apparatus protein 1
mm10_v2_chrX_-_143827391_143827414	2.8056	Sox2	ENSMUST00000087316.5|Capn6|ENSMUSG00000067276.5|calpain 6
mm10_v2_chrX_+_161717498_161717627	2.80522	Sox2	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chrX_+_143518671_143518703	2.79164	Sox2	ENSMUST00000134402.1|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr4_-_155863362_155863362	2.7805	Sox2	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr10_+_69925954_69926133	2.78029	Sox2	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_+_60699718_60699750	2.77443	Sox2	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr11_+_32276400_32276400	2.7666	Sox2	ENSMUST00000020531.2|Hba-x|ENSMUSG00000055609.2|hemoglobin X, alpha-like embryonic chain in Hba complex
mm10_v2_chr3_+_14533867_14533889	2.76521	Sox2	ENSMUST00000163660.1|Lrrcc1|ENSMUSG00000027550.8|leucine rich repeat and coiled-coil domain containing 1
mm10_v2_chr1_+_87404916_87404964	2.76493	Sox2	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr3_-_108210438_108210502	2.76035	Sox2	ENSMUST00000117784.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000119650.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000117409.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2
mm10_v2_chr11_+_116918844_116918888	2.75602	Sox2	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr2_+_28513105_28513126	2.75068	Sox2	ENSMUST00000135803.1|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr11_-_88718078_88718104	2.74077	Sox2	ENSMUST00000092794.5|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr4_-_44167988_44168008	2.7405	Sox2	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr11_-_70220776_70220790	2.72254	Sox2	ENSMUST00000141290.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr3_+_53463666_53463681	2.71747	Sox2	ENSMUST00000058577.4|Proser1|ENSMUSG00000049504.11|proline and serine rich 1
mm10_v2_chr14_+_54431597_54431673	2.71673	Sox2	ENSMUST00000089688.4|Mmp14|ENSMUSG00000000957.8|matrix metallopeptidase 14 (membrane-inserted)
mm10_v2_chr9_+_54863742_54863801	2.71612	Sox2	ENSMUST00000034843.7|Ireb2|ENSMUSG00000032293.7|iron responsive element binding protein 2
mm10_v2_chr7_+_127470354_127470371	2.7106	Sox2	ENSMUST00000106292.1|Prr14|ENSMUSG00000030822.9|proline rich 14
mm10_v2_chr19_-_47919269_47919305	2.7018	Sox2	ENSMUST00000095998.5|Itprip|ENSMUSG00000079254.3|inositol 1,4,5-triphosphate receptor interacting protein
mm10_v2_chr2_-_24919572_24919616	2.69552	Sox2	ENSMUST00000046227.5|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000114432.2|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000091348.4|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000150379.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000152161.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000102938.3|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1
mm10_v2_chr10_-_95324072_95324114	2.68932	Sox2	ENSMUST00000053594.5|Cradd|ENSMUSG00000045867.9|CASP2 and RIPK1 domain containing adaptor with death domain
mm10_v2_chr4_-_99120898_99120935	2.68656	Sox2	ENSMUST00000075836.5|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr2_+_160645881_160645896	2.68292	Sox2	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr3_-_116968827_116968858	2.67731	Sox2	ENSMUST00000119557.1|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr3_+_69316857_69316869	2.67574	Sox2	ENSMUST00000029355.6|Ppm1l|ENSMUSG00000027784.8|protein phosphatase 1 (formerly 2C)-like
mm10_v2_chr9_-_66124872_66124886	2.67313	Sox2	ENSMUST00000034946.8|Snx1|ENSMUSG00000032382.8|sorting nexin 1
mm10_v2_chr9_-_105495475_105495489	2.6714	Sox2	ENSMUST00000176036.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr16_+_23226014_23226077	2.66745	Sox2	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr15_-_99705490_99705490	2.65406	Sox2	ENSMUST00000163472.2|Gm17349|ENSMUSG00000091604.2|predicted gene, 17349
mm10_v2_chr2_-_121806988_121807018	2.65327	Sox2	ENSMUST00000110592.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr9_+_57825918_57825945	2.65019	Sox2	ENSMUST00000165858.1|Gm17231|ENSMUSG00000091908.1|predicted gene 17231
mm10_v2_chr11_-_70220969_70221027	2.64458	Sox2	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr8_-_83166170_83166170	2.6378	Sox2	ENSMUST00000098605.2|Gm10645|ENSMUSG00000074228.2|predicted gene 10645
mm10_v2_chr18_+_35118880_35118903	2.63742	Sox2	ENSMUST00000042345.6|Ctnna1|ENSMUSG00000037815.6|catenin (cadherin associated protein), alpha 1
mm10_v2_chr1_-_165934900_165935036	2.63629	Sox2	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr5_-_30105359_30105359	2.62941	Sox2	ENSMUST00000127749.3|3110082J24Rik|ENSMUSG00000086815.3|RIKEN cDNA 3110082J24 gene
mm10_v2_chr10_+_4266323_4266341	2.62115	Sox2	ENSMUST00000045730.5|Akap12|ENSMUSG00000038587.8|A kinase (PRKA) anchor protein (gravin) 12
mm10_v2_chr18_+_80046854_80046904	2.61842	Sox2	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chr17_+_31296191_31296253	2.61813	Sox2	ENSMUST00000165149.1|Slc37a1|ENSMUSG00000024036.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm10_v2_chr8_-_70120816_70120873	2.61809	Sox2	ENSMUST00000002412.8|Ncan|ENSMUSG00000002341.8|neurocan
mm10_v2_chr13_+_15463837_15463980	2.61727	Sox2	ENSMUST00000110510.3|Gli3|ENSMUSG00000021318.9|GLI-Kruppel family member GLI3
mm10_v2_chr13_-_29984219_29984353	2.61675	Sox2	ENSMUST00000146092.1|E2f3|ENSMUSG00000016477.11|E2F transcription factor 3
mm10_v2_chr10_+_26078255_26078255	2.60068	Sox2	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr10_+_80299084_80299126	2.59714	Sox2	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr3_+_88532314_88532396	2.59508	Sox2	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr15_+_100154379_100154411	2.58844	Sox2	ENSMUST00000023768.6|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila) 	ENSMUST00000108971.2|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr10_+_36974558_36974579	2.58226	Sox2	ENSMUST00000105510.1|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr2_+_92184106_92184310	2.58097	Sox2	ENSMUST00000111294.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000111293.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000162146.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000111292.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000162497.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr2_+_27676440_27676454	2.58034	Sox2	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr7_+_28180272_28180316	2.57556	Sox2	ENSMUST00000173223.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr3_+_88716838_88716883	2.57105	Sox2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr15_-_96642883_96642984	2.56918	Sox2	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr2_-_121807024_121807087	2.56428	Sox2	ENSMUST00000138157.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr5_+_108065696_108065738	2.56168	Sox2	ENSMUST00000172045.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr3_+_96830069_96830115	2.55821	Sox2	ENSMUST00000058865.7|Pdzk1|ENSMUSG00000038298.8|PDZ domain containing 1
mm10_v2_chr6_+_54039558_54039575	2.55331	Sox2	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr4_-_12087912_12088011	2.54816	Sox2	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chr2_-_65567505_65567627	2.5474	Sox2	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr5_+_34949435_34949504	2.53858	Sox2	ENSMUST00000030984.7|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr16_+_19760902_19761054	2.53744	Sox2	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr18_-_88894322_88894371	2.5327	Sox2	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr11_+_98203314_98203335	2.53049	Sox2	ENSMUST00000003203.7|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12 	ENSMUST00000107538.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr6_-_134566913_134566995	2.52361	Sox2	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr7_+_141949982_141950086	2.51468	Sox2	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr9_+_110132015_110132102	2.50849	Sox2	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr1_+_66364623_66364663	2.50551	Sox2	ENSMUST00000077355.5|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114012.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr1_+_182409162_182409184	2.49821	Sox2	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr5_-_114380459_114380487	2.49267	Sox2	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr3_-_116424007_116424032	2.49201	Sox2	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr5_+_137761680_137761714	2.48594	Sox2	ENSMUST00000110983.2|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4 	ENSMUST00000031738.4|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4
mm10_v2_chr3_+_88621274_88621292	2.47971	Sox2	ENSMUST00000107510.3|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr13_+_51645232_51645276	2.47162	Sox2	ENSMUST00000075853.5|Cks2|ENSMUSG00000062248.5|CDC28 protein kinase regulatory subunit 2
mm10_v2_chr2_+_18055203_18055237	2.47126	Sox2	ENSMUST00000028076.8|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr2_-_65567465_65567495	2.47033	Sox2	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr1_-_181183739_181183739	2.46214	Sox2	ENSMUST00000159290.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr4_-_136602641_136602760	2.45697	Sox2	ENSMUST00000105847.1|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A 	ENSMUST00000116273.2|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A
mm10_v2_chr18_-_24020749_24020813	2.4511	Sox2	ENSMUST00000066497.5|Zfp191|ENSMUSG00000051469.8|zinc finger protein 191
mm10_v2_chr6_-_47813512_47813528	2.44658	Sox2	ENSMUST00000077290.7|Pdia4|ENSMUSG00000025823.8|protein disulfide isomerase associated 4
mm10_v2_chr5_-_73256555_73256636	2.44423	Sox2	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr15_+_41830921_41831001	2.44254	Sox2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr10_-_84440591_84440604	2.43802	Sox2	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr2_-_26294550_26294561	2.43616	Sox2	ENSMUST00000057224.3|4932418E24Rik|ENSMUSG00000048038.6|RIKEN cDNA 4932418E24 gene
mm10_v2_chr8_+_12947935_12947962	2.43561	Sox2	ENSMUST00000110871.1|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr6_-_39557830_39557867	2.43418	Sox2	ENSMUST00000036877.3|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A 	ENSMUST00000154149.1|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A
mm10_v2_chr10_+_127739516_127739592	2.42858	Sox2	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr2_-_119787504_119787537	2.42788	Sox2	ENSMUST00000110793.1|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000099529.2|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000048493.5|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1
mm10_v2_chr9_+_59617284_59617301	2.42649	Sox2	ENSMUST00000026267.8|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6 	ENSMUST00000050483.7|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6
mm10_v2_chr13_+_9276477_9276620	2.41977	Sox2	ENSMUST00000174552.1|Dip2c|ENSMUSG00000048264.9|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm10_v2_chr9_+_21616166_21616177	2.41482	Sox2	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr7_+_30095150_30095192	2.40387	Sox2	ENSMUST00000130526.1|Zfp260|ENSMUSG00000049421.7|zinc finger protein 260 	ENSMUST00000108200.1|Zfp260|ENSMUSG00000049421.7|zinc finger protein 260
mm10_v2_chr7_-_19271797_19271823	2.40128	Sox2	ENSMUST00000032561.8|Vasp|ENSMUSG00000030403.8|vasodilator-stimulated phosphoprotein
mm10_v2_chr5_+_52190650_52190704	2.39653	Sox2	ENSMUST00000180601.1|9230114K14Rik|ENSMUSG00000097145.1|RIKEN cDNA 9230114K14 gene
mm10_v2_chr3_+_65528457_65528471	2.39519	Sox2	ENSMUST00000130705.1|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr12_+_21111778_21111954	2.39483	Sox2	ENSMUST00000050990.9|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr10_+_61171954_61171986	2.3922	Sox2	ENSMUST00000122261.1|Tbata|ENSMUSG00000020096.13|thymus, brain and testes associated 	ENSMUST00000121297.1|Tbata|ENSMUSG00000020096.13|thymus, brain and testes associated 	ENSMUST00000035894.5|Tbata|ENSMUSG00000020096.13|thymus, brain and testes associated
mm10_v2_chr2_+_32535315_32535359	2.39003	Sox2	ENSMUST00000133512.1|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A 	ENSMUST00000048375.5|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A
mm10_v2_chr2_+_27009926_27009935	2.39	Sox2	ENSMUST00000114005.2|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114004.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114006.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114007.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr14_-_56571830_56571860	2.38981	Sox2	ENSMUST00000065302.7|Cenpj|ENSMUSG00000064128.6|centromere protein J
mm10_v2_chr6_-_99666762_99666786	2.3773	Sox2	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr17_-_15375969_15375983	2.37626	Sox2	ENSMUST00000014917.7|Dll1|ENSMUSG00000014773.7|delta-like 1 (Drosophila)
mm10_v2_chr5_+_48242549_48242549	2.36968	Sox2	ENSMUST00000172493.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chr7_-_73537621_73537766	2.36109	Sox2	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr7_+_99381495_99381555	2.35593	Sox2	ENSMUST00000037528.8|Gdpd5|ENSMUSG00000035314.8|glycerophosphodiester phosphodiesterase domain containing 5
mm10_v2_chr19_+_28990476_28990497	2.35307	Sox2	ENSMUST00000050148.3|Cdc37l1|ENSMUSG00000024780.6|cell division cycle 37-like 1
mm10_v2_chr14_+_73142490_73142564	2.35061	Sox2	ENSMUST00000170370.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000164822.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000165429.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr14_+_21499770_21499883	2.34509	Sox2	ENSMUST00000182855.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000069648.7|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000182405.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr19_-_7383026_7383063	2.33516	Sox2	ENSMUST00000025924.2|AI846148|ENSMUSG00000024970.4|expressed sequence AI846148
mm10_v2_chr19_-_5729618_5729700	2.33511	Sox2	ENSMUST00000116558.2|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000099955.3|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000161368.1|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B
mm10_v2_chr16_-_20425881_20425986	2.33226	Sox2	ENSMUST00000077867.3|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr10_-_12861735_12861735	2.33125	Sox2	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr15_-_79742518_79742562	2.32132	Sox2	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr9_+_102720287_102720336	2.32039	Sox2	ENSMUST00000130602.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr8_-_109962127_109962213	2.31972	Sox2	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chr12_-_45074457_45074493	2.31957	Sox2	ENSMUST00000053768.6|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chr7_+_100494044_100494088	2.31807	Sox2	ENSMUST00000153287.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr6_+_47835650_47835725	2.29664	Sox2	ENSMUST00000079881.4|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398 	ENSMUST00000114598.1|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398
mm10_v2_chr15_-_79441802_79441860	2.28886	Sox2	ENSMUST00000122044.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000135519.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr6_-_144209558_144209647	2.28717	Sox2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr16_+_84774123_84774174	2.27509	Sox2	ENSMUST00000114195.1|Jam2|ENSMUSG00000053062.9|junction adhesion molecule 2
mm10_v2_chr1_-_136346074_136346145	2.27384	Sox2	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr3_+_20057802_20057857	2.27271	Sox2	ENSMUST00000002502.5|Hltf|ENSMUSG00000002428.6|helicase-like transcription factor
mm10_v2_chr1_-_190170178_190170237	2.27216	Sox2	ENSMUST00000177288.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr3_-_116423930_116423993	2.27156	Sox2	ENSMUST00000106491.2|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr2_-_152830615_152830680	2.26917	Sox2	ENSMUST00000146380.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134902.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134357.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000109820.3|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr6_-_144209471_144209487	2.25953	Sox2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr10_-_61452658_61452813	2.24911	Sox2	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr4_+_107802277_107802413	2.23521	Sox2	ENSMUST00000106733.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000030356.3|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000106732.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000126573.1|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr16_-_85901118_85901133	2.23342	Sox2	ENSMUST00000023611.5|Adamts5|ENSMUSG00000022894.5|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm10_v2_chr6_-_144209448_144209469	2.23339	Sox2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chrX_+_166238901_166238914	2.21805	Sox2	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr2_-_132578155_132578233	2.21478	Sox2	ENSMUST00000110136.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000124107.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000060955.5|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr2_-_11502090_11502126	2.20389	Sox2	ENSMUST00000179584.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000170196.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000171188.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114845.3|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114844.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000100411.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr3_-_127499095_127499137	2.18783	Sox2	ENSMUST00000182594.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr11_+_94044331_94044365	2.17689	Sox2	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr4_-_132049058_132049156	2.16722	Sox2	ENSMUST00000105981.2|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000084253.3|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000141291.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr2_-_132578128_132578153	2.15891	Sox2	ENSMUST00000028822.7|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr2_+_131491764_131491943	2.15339	Sox2	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr12_+_8674391_8674470	2.15338	Sox2	ENSMUST00000163569.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000169089.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr18_+_34624621_34624629	2.14377	Sox2	ENSMUST00000167161.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr17_-_70853482_70853546	2.14264	Sox2	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr13_-_119408985_119409003	2.14046	Sox2	ENSMUST00000099149.3|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase 	ENSMUST00000069902.6|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase 	ENSMUST00000109204.1|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase
mm10_v2_chr4_-_34730157_34730232	2.13596	Sox2	ENSMUST00000108136.1|1700003M02Rik|ENSMUSG00000028294.9|RIKEN cDNA 1700003M02 gene 	ENSMUST00000137514.1|1700003M02Rik|ENSMUSG00000028294.9|RIKEN cDNA 1700003M02 gene 	ENSMUST00000029971.5|1700003M02Rik|ENSMUSG00000028294.9|RIKEN cDNA 1700003M02 gene
mm10_v2_chr2_-_140671440_140671458	2.13479	Sox2	ENSMUST00000099301.1|Flrt3|ENSMUSG00000079021.1|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr3_+_98382538_98382553	2.13298	Sox2	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr3_-_116968969_116969004	2.13212	Sox2	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr9_+_3335470_3335501	2.12267	Sox2	ENSMUST00000053407.5|Alkbh8|ENSMUSG00000025899.7|alkB, alkylation repair homolog 8 (E. coli)
mm10_v2_chr11_-_76763550_76763582	2.11366	Sox2	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr13_-_77131276_77131329	2.11211	Sox2	ENSMUST00000159300.1|Ankrd32|ENSMUSG00000021597.10|ankyrin repeat domain 32
mm10_v2_chr3_-_107931817_107931885	2.11194	Sox2	ENSMUST00000004137.4|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr18_+_34625009_34625033	2.10839	Sox2	ENSMUST00000166044.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr15_-_79742493_79742511	2.10404	Sox2	ENSMUST00000100439.3|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr9_-_108578657_108578675	2.0946	Sox2	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr19_+_4756557_4756623	2.09392	Sox2	ENSMUST00000036744.7|Rbm4b|ENSMUSG00000033760.10|RNA binding motif protein 4B
mm10_v2_chr7_+_105375053_105375098	2.09376	Sox2	ENSMUST00000106805.2|Gm5901|ENSMUSG00000078611.2|predicted gene 5901
mm10_v2_chr8_-_67974567_67974596	2.09292	Sox2	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr11_+_117332335_117332348	2.08663	Sox2	ENSMUST00000106349.1|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr2_+_131491958_131491993	2.08624	Sox2	ENSMUST00000110181.1|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110180.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr8_+_71908595_71908657	2.08517	Sox2	ENSMUST00000110002.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882 	ENSMUST00000131544.1|Zfp617|ENSMUSG00000066880.9|zinc finger protein 617 	ENSMUST00000125802.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882
mm10_v2_chr12_-_84946921_84946923	2.08386	Sox2	ENSMUST00000169161.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chr1_-_135375233_135375245	2.08336	Sox2	ENSMUST00000041240.3|Shisa4|ENSMUSG00000041889.7|shisa homolog 4 (Xenopus laevis)
mm10_v2_chr5_+_93268247_93268314	2.07469	Sox2	ENSMUST00000121127.1|Ccng2|ENSMUSG00000029385.8|cyclin G2
mm10_v2_chr12_-_112829351_112829426	2.07055	Sox2	ENSMUST00000062092.5|Cdca4|ENSMUSG00000047832.8|cell division cycle associated 4
mm10_v2_chr7_-_127615208_127615219	2.06545	Sox2	ENSMUST00000122066.1|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr3_-_30793549_30793595	2.06381	Sox2	ENSMUST00000180833.1|4933429H19Rik|ENSMUSG00000097786.1|RIKEN cDNA 4933429H19 gene
mm10_v2_chr5_-_65697856_65697963	2.06181	Sox2	ENSMUST00000031104.6|Pds5a|ENSMUSG00000029202.9|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
mm10_v2_chr5_-_110387090_110387154	2.06055	Sox2	ENSMUST00000056124.6|Fbrsl1|ENSMUSG00000043323.10|fibrosin-like 1
mm10_v2_chr17_+_75005523_75005568	2.05947	Sox2	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr15_-_96699698_96699717	2.05932	Sox2	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr4_-_99120856_99120894	2.05917	Sox2	ENSMUST00000030286.7|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chrX_+_47912387_47912442	2.05483	Sox2	ENSMUST00000001202.8|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe 	ENSMUST00000115020.1|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe
mm10_v2_chr15_-_58214882_58214926	2.03612	Sox2	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr4_+_132638987_132639118	2.03271	Sox2	ENSMUST00000135299.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000081726.6|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000180250.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000020197.7|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000079157.4|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila)
mm10_v2_chr10_-_19011948_19011973	2.01749	Sox2	ENSMUST00000105527.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr18_+_52767994_52768149	2.01507	Sox2	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr9_-_22307638_22307694	2.01342	Sox2	ENSMUST00000086278.6|Zfp810|ENSMUSG00000066829.6|zinc finger protein 810
mm10_v2_chr14_+_27039001_27039050	2.01341	Sox2	ENSMUST00000035336.3|Il17rd|ENSMUSG00000040717.5|interleukin 17 receptor D
mm10_v2_chr13_+_60602182_60602231	2.01297	Sox2	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr2_+_27009936_27010082	2.01116	Sox2	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr7_+_28179469_28179535	1.99418	Sox2	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr3_+_14533788_14533815	1.99188	Sox2	ENSMUST00000108370.2|Lrrcc1|ENSMUSG00000027550.8|leucine rich repeat and coiled-coil domain containing 1
mm10_v2_chr3_-_88762244_88762384	1.98761	Sox2	ENSMUST00000183267.1|Syt11|ENSMUSG00000068923.8|synaptotagmin XI
mm10_v2_chr10_-_84533884_84533896	1.97714	Sox2	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr4_+_32238950_32238964	1.97615	Sox2	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr3_+_88716884_88716906	1.97347	Sox2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr10_+_17796256_17796339	1.97279	Sox2	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr2_-_156111954_156111978	1.97032	Sox2	ENSMUST00000059647.5|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000109604.2|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000142960.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000138068.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000136296.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000128499.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12
mm10_v2_chr13_+_65278839_65278903	1.94728	Sox2	ENSMUST00000155732.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr9_+_4383535_4383535	1.94286	Sox2	ENSMUST00000047173.9|Msantd4|ENSMUSG00000041124.10|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
mm10_v2_chr7_+_127233044_127233073	1.94233	Sox2	ENSMUST00000106312.3|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chr17_-_55712571_55712630	1.94151	Sox2	ENSMUST00000086876.5|Pot1b|ENSMUSG00000024174.8|protection of telomeres 1B
mm10_v2_chr6_+_54040078_54040091	1.93909	Sox2	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr17_+_43016536_43016591	1.93779	Sox2	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr15_-_98871175_98871204	1.93231	Sox2	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr2_-_132578244_132578255	1.93216	Sox2	ENSMUST00000110142.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr18_-_23981555_23981555	1.93196	Sox2	ENSMUST00000115829.1|Zscan30|ENSMUSG00000024274.8|zinc finger and SCAN domain containing 30
mm10_v2_chr1_-_33814516_33814576	1.92887	Sox2	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr5_+_115429944_115429997	1.92769	Sox2	ENSMUST00000067168.5|Msi1|ENSMUSG00000054256.5|musashi RNA-binding protein 1
mm10_v2_chr15_-_75905349_75905388	1.92385	Sox2	ENSMUST00000127550.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr3_+_61364507_61364633	1.91825	Sox2	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chr11_+_94044194_94044238	1.91439	Sox2	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr6_+_125096145_125096162	1.91422	Sox2	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr19_+_6364557_6364668	1.89996	Sox2	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr12_+_84996309_84996419	1.88908	Sox2	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr3_+_98382438_98382520	1.88498	Sox2	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr9_-_59486323_59486415	1.87996	Sox2	ENSMUST00000165322.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr3_-_51560816_51560878	1.87522	Sox2	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr9_-_107872403_107872422	1.87277	Sox2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr16_+_17233560_17233664	1.87101	Sox2	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr2_-_146511899_146511979	1.86097	Sox2	ENSMUST00000131824.1|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr2_+_157560078_157560130	1.85901	Sox2	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr8_+_36094828_36094868	1.85335	Sox2	ENSMUST00000110492.1|D8Ertd82e|ENSMUSG00000050271.6|DNA segment, Chr 8, ERATO Doi 82, expressed
mm10_v2_chr2_+_92185467_92185494	1.85232	Sox2	ENSMUST00000111291.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr4_+_6191093_6191122	1.8522	Sox2	ENSMUST00000029907.5|Ubxn2b|ENSMUSG00000028243.5|UBX domain protein 2B
mm10_v2_chrX_-_53370470_53370502	1.85075	Sox2	ENSMUST00000096447.2|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1 	ENSMUST00000023836.3|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1
mm10_v2_chr7_+_4925802_4925868	1.84641	Sox2	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chr13_+_56703504_56703668	1.84131	Sox2	ENSMUST00000109874.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr5_-_142905928_142905978	1.84076	Sox2	ENSMUST00000106216.2|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr11_-_106579111_106579141	1.83769	Sox2	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr7_-_74013676_74013699	1.83511	Sox2	ENSMUST00000026896.4|St8sia2|ENSMUSG00000025789.4|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm10_v2_chr11_-_86807624_86807746	1.82681	Sox2	ENSMUST00000018569.7|Dhx40|ENSMUSG00000018425.12|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm10_v2_chr9_-_105495130_105495146	1.82469	Sox2	ENSMUST00000038118.7|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chrX_+_166238923_166239024	1.82243	Sox2	ENSMUST00000060210.7|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112233.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr12_+_24974914_24974948	1.81775	Sox2	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr2_-_131352857_131352889	1.80666	Sox2	ENSMUST00000059372.4|Rnf24|ENSMUSG00000048911.9|ring finger protein 24
mm10_v2_chr4_-_62208426_62208487	1.80483	Sox2	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr2_-_30474199_30474222	1.7985	Sox2	ENSMUST00000065134.2|Ier5l|ENSMUSG00000089762.2|immediate early response 5-like
mm10_v2_chr16_+_11405648_11405713	1.79741	Sox2	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr18_-_43393346_43393381	1.7897	Sox2	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr16_-_20426375_20426394	1.78816	Sox2	ENSMUST00000079158.6|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr5_+_146231211_146231385	1.78519	Sox2	ENSMUST00000161181.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000161652.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000031640.8|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000159467.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8
mm10_v2_chr10_+_57486354_57486414	1.78123	Sox2	ENSMUST00000079833.4|Hsf2|ENSMUSG00000019878.7|heat shock factor 2
mm10_v2_chr5_+_3928267_3928300	1.78015	Sox2	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr18_+_34777008_34777075	1.77981	Sox2	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr17_+_21733704_21733724	1.77817	Sox2	ENSMUST00000183192.1|Zfp229|ENSMUSG00000061544.7|zinc finger protein 229 	ENSMUST00000065871.7|Zfp229|ENSMUSG00000061544.7|zinc finger protein 229
mm10_v2_chr16_+_78301673_78301760	1.77723	Sox2	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr6_-_88875035_88875053	1.7758	Sox2	ENSMUST00000145944.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr5_-_114380505_114380520	1.75981	Sox2	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr9_-_44721383_44721484	1.75877	Sox2	ENSMUST00000148929.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1 	ENSMUST00000123406.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr5_+_142960343_142960363	1.74766	Sox2	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr4_-_44167905_44167976	1.74086	Sox2	ENSMUST00000102934.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr1_-_6215292_6215292	1.73656	Sox2	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr11_-_99230998_99231019	1.73278	Sox2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chrX_+_18162575_18162657	1.73117	Sox2	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr4_-_44167580_44167608	1.73089	Sox2	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr17_-_78684262_78684352	1.72794	Sox2	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr1_-_54926311_54926402	1.72217	Sox2	ENSMUST00000179030.1|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44 	ENSMUST00000044359.9|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44
mm10_v2_chr2_-_37443096_37443178	1.72133	Sox2	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr11_-_50292302_50292363	1.71969	Sox2	ENSMUST00000059458.4|Maml1|ENSMUSG00000050567.10|mastermind like 1 (Drosophila)
mm10_v2_chr15_-_79254737_79254764	1.71722	Sox2	ENSMUST00000039752.3|Slc16a8|ENSMUSG00000032988.3|solute carrier family 16 (monocarboxylic acid transporters), member 8
mm10_v2_chr19_+_44293676_44293676	1.71553	Sox2	ENSMUST00000026221.5|Scd2|ENSMUSG00000025203.5|stearoyl-Coenzyme A desaturase 2
mm10_v2_chr2_+_37443273_37443339	1.71411	Sox2	ENSMUST00000133434.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000061179.5|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr14_-_40966807_40966848	1.70884	Sox2	ENSMUST00000047652.5|Tspan14|ENSMUSG00000037824.5|tetraspanin 14
mm10_v2_chr12_-_16800674_16800705	1.70809	Sox2	ENSMUST00000162112.1|Greb1|ENSMUSG00000036523.10|gene regulated by estrogen in breast cancer protein
mm10_v2_chr11_-_78497734_78497793	1.6992	Sox2	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chrX_+_159459125_159459165	1.69816	Sox2	ENSMUST00000043151.5|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2 	ENSMUST00000112470.1|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2 	ENSMUST00000156172.1|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2
mm10_v2_chr17_-_46487641_46487682	1.69814	Sox2	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr3_-_86999284_86999441	1.69811	Sox2	ENSMUST00000063869.5|Cd1d1|ENSMUSG00000028076.6|CD1d1 antigen 	ENSMUST00000029717.2|Cd1d1|ENSMUSG00000028076.6|CD1d1 antigen
mm10_v2_chr11_-_102819114_102819214	1.69756	Sox2	ENSMUST00000068933.5|Gjc1|ENSMUSG00000034520.8|gap junction protein, gamma 1
mm10_v2_chr2_+_156312589_156312633	1.68683	Sox2	ENSMUST00000073942.5|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2 	ENSMUST00000109580.1|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2
mm10_v2_chr3_+_16183177_16183206	1.68169	Sox2	ENSMUST00000108345.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3 	ENSMUST00000108346.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3
mm10_v2_chr3_-_122619442_122619553	1.68151	Sox2	ENSMUST00000162947.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr2_-_20968881_20968957	1.67757	Sox2	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr10_-_84533968_84534036	1.6753	Sox2	ENSMUST00000167671.1|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr19_-_40588374_40588426	1.67327	Sox2	ENSMUST00000175932.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000176955.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000149476.2|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr6_+_29735667_29735694	1.67007	Sox2	ENSMUST00000001812.4|Smo|ENSMUSG00000001761.6|smoothened homolog (Drosophila)
mm10_v2_chr1_-_173367638_173367695	1.66896	Sox2	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr3_+_103914560_103914605	1.66403	Sox2	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr7_-_29505447_29505473	1.65777	Sox2	ENSMUST00000183096.1|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3 	ENSMUST00000085809.4|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3
mm10_v2_chr5_+_118065360_118065360	1.65277	Sox2	ENSMUST00000031305.3|Gm9754|ENSMUSG00000029360.3|predicted gene 9754
mm10_v2_chr7_-_6331235_6331290	1.65083	Sox2	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr2_-_27426992_27427061	1.63342	Sox2	ENSMUST00000056176.7|Vav2|ENSMUSG00000009621.12|vav 2 oncogene
mm10_v2_chr14_+_73142591_73142723	1.63149	Sox2	ENSMUST00000170368.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr2_-_60881360_60881491	1.62681	Sox2	ENSMUST00000164147.1|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1 	ENSMUST00000112509.1|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr9_+_110052016_110052111	1.62186	Sox2	ENSMUST00000164930.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4 	ENSMUST00000163979.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4
mm10_v2_chr11_+_17211912_17211964	1.60774	Sox2	ENSMUST00000046955.6|Wdr92|ENSMUSG00000078970.5|WD repeat domain 92
mm10_v2_chr3_+_14533817_14533866	1.60478	Sox2	ENSMUST00000169079.1|Lrrcc1|ENSMUSG00000027550.8|leucine rich repeat and coiled-coil domain containing 1 	ENSMUST00000091325.3|Lrrcc1|ENSMUSG00000027550.8|leucine rich repeat and coiled-coil domain containing 1
mm10_v2_chr1_-_93101825_93101849	1.60173	Sox2	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr11_-_77607812_77607860	1.5986	Sox2	ENSMUST00000058496.7|Taok1|ENSMUSG00000017291.7|TAO kinase 1
mm10_v2_chr14_-_8309770_8309795	1.59508	Sox2	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr2_-_25983236_25983290	1.58972	Sox2	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr7_-_63938862_63938933	1.58445	Sox2	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr19_+_30030589_30030634	1.58308	Sox2	ENSMUST00000112552.1|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr8_+_22757744_22757761	1.58265	Sox2	ENSMUST00000033941.5|Plat|ENSMUSG00000031538.5|plasminogen activator, tissue
mm10_v2_chr12_+_71309876_71309984	1.58227	Sox2	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr19_-_46039442_46039481	1.57528	Sox2	ENSMUST00000137771.1|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr17_-_32284088_32284123	1.5723	Sox2	ENSMUST00000119123.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000003726.8|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000121285.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000120276.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000114475.2|Brd4|ENSMUSG00000024002.10|bromodomain containing 4
mm10_v2_chr6_+_92092369_92092433	1.57129	Sox2	ENSMUST00000113463.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr4_+_83417715_83417758	1.57111	Sox2	ENSMUST00000030206.3|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3 	ENSMUST00000071544.4|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3
mm10_v2_chr6_+_134035691_134035717	1.56179	Sox2	ENSMUST00000081028.6|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene) 	ENSMUST00000111963.1|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene)
mm10_v2_chr18_+_82475133_82475162	1.56162	Sox2	ENSMUST00000091789.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114676.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000047865.7|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr14_-_52316323_52316344	1.55889	Sox2	ENSMUST00000135523.1|Sall2|ENSMUSG00000049532.7|sal-like 2 (Drosophila)
mm10_v2_chr2_+_163438455_163438536	1.55294	Sox2	ENSMUST00000109420.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000109421.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000018087.6|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000137070.1|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1
mm10_v2_chr19_-_37330613_37330613	1.54744	Sox2	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr16_-_97851796_97851853	1.54686	Sox2	ENSMUST00000121584.1|Prdm15|ENSMUSG00000014039.11|PR domain containing 15
mm10_v2_chr13_-_55488038_55488111	1.54195	Sox2	ENSMUST00000109921.2|Dbn1|ENSMUSG00000034675.11|drebrin 1 	ENSMUST00000109923.2|Dbn1|ENSMUSG00000034675.11|drebrin 1 	ENSMUST00000021950.8|Dbn1|ENSMUSG00000034675.11|drebrin 1
mm10_v2_chr15_+_59648644_59648687	1.54028	Sox2	ENSMUST00000118228.1|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr9_+_120929216_120929251	1.53786	Sox2	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr17_-_43667015_43667163	1.53519	Sox2	ENSMUST00000024705.4|Slc25a27|ENSMUSG00000023912.9|solute carrier family 25, member 27
mm10_v2_chr17_+_84956718_84956745	1.53148	Sox2	ENSMUST00000112305.3|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
mm10_v2_chr17_-_34121944_34121988	1.53038	Sox2	ENSMUST00000151986.1|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr5_-_28467093_28467109	1.5295	Sox2	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr8_-_83332416_83332494	1.52654	Sox2	ENSMUST00000177594.1|Elmod2|ENSMUSG00000035151.6|ELMO/CED-12 domain containing 2 	ENSMUST00000053902.3|Elmod2|ENSMUSG00000035151.6|ELMO/CED-12 domain containing 2
mm10_v2_chr11_+_98203059_98203059	1.52378	Sox2	ENSMUST00000107539.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr8_+_108714644_108714644	1.52253	Sox2	ENSMUST00000043896.8|Zfhx3|ENSMUSG00000038872.8|zinc finger homeobox 3
mm10_v2_chr10_-_83533383_83533406	1.52192	Sox2	ENSMUST00000146640.1|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr15_+_82274935_82275034	1.5209	Sox2	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr11_+_117232254_117232329	1.51193	Sox2	ENSMUST00000106354.2|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr8_-_47713920_47713938	1.51174	Sox2	ENSMUST00000038738.5|Cdkn2aip|ENSMUSG00000038069.5|CDKN2A interacting protein
mm10_v2_chr13_+_49341549_49341623	1.51082	Sox2	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr3_+_40745430_40745459	1.50862	Sox2	ENSMUST00000077083.6|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr13_+_65278810_65278838	1.50369	Sox2	ENSMUST00000126879.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369 	ENSMUST00000130799.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr7_-_127615226_127615272	1.49894	Sox2	ENSMUST00000084564.3|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr7_-_84409959_84410002	1.49377	Sox2	ENSMUST00000085077.3|Arnt2|ENSMUSG00000015709.8|aryl hydrocarbon receptor nuclear translocator 2
mm10_v2_chr19_-_56822161_56822220	1.49368	Sox2	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr1_-_153487639_153487662	1.48966	Sox2	ENSMUST00000042141.5|Dhx9|ENSMUSG00000042699.5|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm10_v2_chr17_-_26069409_26069550	1.48479	Sox2	ENSMUST00000120691.1|Rab11fip3|ENSMUSG00000037098.11|RAB11 family interacting protein 3 (class II)
mm10_v2_chr11_+_54303798_54303844	1.48437	Sox2	ENSMUST00000093106.5|Acsl6|ENSMUSG00000020333.11|acyl-CoA synthetase long-chain family member 6
mm10_v2_chr5_-_52190484_52190524	1.48137	Sox2	ENSMUST00000031061.7|Dhx15|ENSMUSG00000029169.7|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm10_v2_chr11_-_87108656_87108719	1.48136	Sox2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr13_-_9764865_9764941	1.47596	Sox2	ENSMUST00000128658.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr4_-_132212255_132212303	1.46772	Sox2	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr15_-_103215285_103215366	1.45809	Sox2	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr10_+_127063527_127063538	1.45087	Sox2	ENSMUST00000006911.5|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr7_+_12881165_12881204	1.44939	Sox2	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr16_+_31663841_31663912	1.44921	Sox2	ENSMUST00000115201.1|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr4_-_109156610_109156631	1.44872	Sox2	ENSMUST00000161363.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr8_-_67818284_67818320	1.44375	Sox2	ENSMUST00000120071.1|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr3_+_153973436_153973520	1.44368	Sox2	ENSMUST00000089948.5|Slc44a5|ENSMUSG00000028360.9|solute carrier family 44, member 5
mm10_v2_chr14_+_61599493_61599548	1.44194	Sox2	ENSMUST00000039562.6|Trim13|ENSMUSG00000035235.6|tripartite motif-containing 13
mm10_v2_chr7_+_27195781_27195885	1.44162	Sox2	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr5_-_8367982_8368107	1.43811	Sox2	ENSMUST00000088761.4|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115386.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000050166.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000046838.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115388.2|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000088744.5|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115385.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22
mm10_v2_chr9_-_103480328_103480348	1.43738	Sox2	ENSMUST00000124310.2|Bfsp2|ENSMUSG00000032556.9|beaded filament structural protein 2, phakinin
mm10_v2_chr8_-_40634750_40634775	1.43434	Sox2	ENSMUST00000173957.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr4_-_33248500_33248518	1.43181	Sox2	ENSMUST00000049357.9|Pnrc1|ENSMUSG00000040128.9|proline-rich nuclear receptor coactivator 1
mm10_v2_chr11_-_62731865_62731910	1.43068	Sox2	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr2_+_3713478_3713500	1.42998	Sox2	ENSMUST00000115053.2|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr10_+_69213084_69213228	1.42951	Sox2	ENSMUST00000163497.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000164212.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000067908.7|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1
mm10_v2_chr11_+_80383309_80383336	1.42826	Sox2	ENSMUST00000108216.1|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr8_-_109251698_109251728	1.42798	Sox2	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr12_-_69357120_69357181	1.42551	Sox2	ENSMUST00000021368.8|Nemf|ENSMUSG00000020982.8|nuclear export mediator factor
mm10_v2_chr2_+_125859134_125859225	1.40335	Sox2	ENSMUST00000028636.6|Galk2|ENSMUSG00000027207.9|galactokinase 2 	ENSMUST00000125084.1|Galk2|ENSMUSG00000027207.9|galactokinase 2
mm10_v2_chr2_+_3114220_3114225	1.40304	Sox2	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr10_+_80755196_80755239	1.3974	Sox2	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr13_-_54687696_54687809	1.39691	Sox2	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr11_+_46055973_46056068	1.39543	Sox2	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr7_-_133122615_133122762	1.3918	Sox2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr14_+_75845093_75845165	1.3884	Sox2	ENSMUST00000110894.2|Tpt1|ENSMUSG00000060126.8|tumor protein, translationally-controlled 1
mm10_v2_chr1_-_87156127_87156165	1.38733	Sox2	ENSMUST00000160810.1|Ecel1|ENSMUSG00000026247.7|endothelin converting enzyme-like 1
mm10_v2_chr16_-_96082513_96082573	1.38591	Sox2	ENSMUST00000113827.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr13_+_97241096_97241116	1.38459	Sox2	ENSMUST00000041623.7|Enc1|ENSMUSG00000041773.7|ectodermal-neural cortex 1
mm10_v2_chr8_-_33747724_33747781	1.38354	Sox2	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr19_-_4615647_4615700	1.36767	Sox2	ENSMUST00000113822.2|Lrfn4|ENSMUSG00000045045.7|leucine rich repeat and fibronectin type III domain containing 4
mm10_v2_chr6_-_52012476_52012551	1.36591	Sox2	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr2_+_160731258_160731310	1.36459	Sox2	ENSMUST00000103115.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr2_+_172472512_172472535	1.36107	Sox2	ENSMUST00000029007.2|Fam209|ENSMUSG00000027505.2|family with sequence similarity 209
mm10_v2_chr9_-_45906369_45906437	1.35852	Sox2	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr6_+_54039935_54040039	1.35136	Sox2	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr17_-_35000746_35000801	1.35023	Sox2	ENSMUST00000163360.1|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr3_-_127225917_127225959	1.35021	Sox2	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr2_+_28513243_28513326	1.3465	Sox2	ENSMUST00000028170.8|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr10_+_36974536_36974556	1.34629	Sox2	ENSMUST00000019911.7|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr3_-_158016419_158016453	1.34594	Sox2	ENSMUST00000127778.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr8_-_67818218_67818269	1.34593	Sox2	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr15_-_102722150_102722178	1.3443	Sox2	ENSMUST00000023818.3|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr16_-_20730544_20730627	1.34078	Sox2	ENSMUST00000076422.5|Thpo|ENSMUSG00000022847.8|thrombopoietin
mm10_v2_chr3_+_95160449_95160505	1.33839	Sox2	ENSMUST00000090823.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENSMUST00000090821.3|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm10_v2_chr6_+_17065129_17065233	1.33679	Sox2	ENSMUST00000115467.4|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000154266.2|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000076654.7|Tes|ENSMUSG00000029552.13|testis derived transcript
mm10_v2_chr4_+_154170730_154170742	1.33498	Sox2	ENSMUST00000030897.8|Megf6|ENSMUSG00000057751.8|multiple EGF-like-domains 6
mm10_v2_chr4_-_148159571_148159649	1.33479	Sox2	ENSMUST00000167160.1|Fbxo44|ENSMUSG00000029001.9|F-box protein 44 	ENSMUST00000151246.1|Fbxo44|ENSMUSG00000029001.9|F-box protein 44
mm10_v2_chr5_-_142905816_142905832	1.33262	Sox2	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr4_-_116405986_116406120	1.32741	Sox2	ENSMUST00000123072.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000144281.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chr19_+_7417586_7417650	1.32217	Sox2	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr3_+_65528404_65528431	1.32067	Sox2	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr7_+_126272589_126272619	1.31832	Sox2	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr10_+_127063599_127063655	1.317	Sox2	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr4_-_148152059_148152146	1.31591	Sox2	ENSMUST00000056965.5|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000168503.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000152098.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6
mm10_v2_chr6_+_48613180_48613180	1.31239	Sox2	ENSMUST00000061720.4|Zfp775|ENSMUSG00000007216.4|zinc finger protein 775
mm10_v2_chr14_+_52197502_52197518	1.30818	Sox2	ENSMUST00000180857.1|Gm26590|ENSMUSG00000097533.1|predicted gene, 26590
mm10_v2_chr2_-_11502067_11502080	1.3027	Sox2	ENSMUST00000028114.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000049849.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr8_-_8660773_8660773	1.30169	Sox2	ENSMUST00000001319.7|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr14_-_33447142_33447179	1.30158	Sox2	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr19_-_5894100_5894155	1.3007	Sox2	ENSMUST00000055911.4|Tigd3|ENSMUSG00000044390.4|tigger transposable element derived 3
mm10_v2_chr11_-_121229095_121229292	1.29604	Sox2	ENSMUST00000137299.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000169393.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr9_-_65021645_65021717	1.29035	Sox2	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr11_-_23633621_23633639	1.28879	Sox2	ENSMUST00000180260.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000141353.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000131612.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000109532.2|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene
mm10_v2_chr11_+_94044241_94044273	1.2887	Sox2	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr4_+_86930691_86930713	1.28644	Sox2	ENSMUST00000164590.1|Acer2|ENSMUSG00000091609.1|alkaline ceramidase 2
mm10_v2_chr9_-_75597643_75597656	1.28362	Sox2	ENSMUST00000164100.1|Tmod2|ENSMUSG00000032186.8|tropomodulin 2
mm10_v2_chr4_+_116557658_116557724	1.28211	Sox2	ENSMUST00000030460.8|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr15_-_79441999_79442065	1.2796	Sox2	ENSMUST00000117786.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000120859.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr15_+_34082664_34082734	1.27934	Sox2	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr7_-_127875633_127875673	1.27204	Sox2	ENSMUST00000106261.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668 	ENSMUST00000144721.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668
mm10_v2_chr3_-_39359128_39359160	1.26581	Sox2	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr10_+_107271827_107271850	1.265	Sox2	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr9_+_18427543_18427543	1.26245	Sox2	ENSMUST00000053326.9|Gm5612|ENSMUSG00000074501.5|predicted gene 5612
mm10_v2_chr3_-_85741389_85741389	1.25863	Sox2	ENSMUST00000094148.4|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr2_-_168767136_168767201	1.25084	Sox2	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr11_+_114851142_114851173	1.24991	Sox2	ENSMUST00000133245.1|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C 	ENSMUST00000122967.2|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C
mm10_v2_chr9_+_106821874_106821994	1.24959	Sox2	ENSMUST00000159645.1|Vprbp|ENSMUSG00000040325.10|Vpr (HIV-1) binding protein
mm10_v2_chr12_+_111039334_111039400	1.24822	Sox2	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr9_+_7764041_7764177	1.24676	Sox2	ENSMUST00000052865.9|Tmem123|ENSMUSG00000050912.9|transmembrane protein 123
mm10_v2_chr3_-_127225847_127225915	1.24525	Sox2	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr19_+_10688744_10688818	1.24281	Sox2	ENSMUST00000087951.5|Vps37c|ENSMUSG00000048832.8|vacuolar protein sorting 37C (yeast)
mm10_v2_chr9_-_59486610_59486621	1.24162	Sox2	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr12_+_38781093_38781129	1.23839	Sox2	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr11_+_114851507_114851553	1.23131	Sox2	ENSMUST00000177952.1|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C
mm10_v2_chr4_+_130792513_130792667	1.2291	Sox2	ENSMUST00000070478.3|Sdc3|ENSMUSG00000025743.8|syndecan 3
mm10_v2_chr15_-_102722120_102722137	1.22069	Sox2	ENSMUST00000171838.1|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr12_+_40446050_40446099	1.21946	Sox2	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr2_+_84734050_84734107	1.21929	Sox2	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr17_+_74338943_74338987	1.21859	Sox2	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr11_-_106160708_106160860	1.21648	Sox2	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr10_-_127751707_127751737	1.2144	Sox2	ENSMUST00000079692.5|Gpr182|ENSMUSG00000058396.7|G protein-coupled receptor 182
mm10_v2_chr18_-_6516089_6516108	1.21169	Sox2	ENSMUST00000115870.2|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
mm10_v2_chr12_-_83921899_83921934	1.21143	Sox2	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr7_+_130692532_130692575	1.20156	Sox2	ENSMUST00000033141.6|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr1_-_158356258_158356313	1.19714	Sox2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr3_+_88142536_88142572	1.19435	Sox2	ENSMUST00000107558.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000107559.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr16_+_31664130_31664178	1.18909	Sox2	ENSMUST00000023454.5|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr16_+_94370618_94370784	1.18612	Sox2	ENSMUST00000117648.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000147352.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150346.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000155692.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000153988.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000141856.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000152117.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150097.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000122895.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000151770.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr1_-_36557517_36557561	1.18351	Sox2	ENSMUST00000114990.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000128104.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000027295.4|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr17_+_35059035_35059130	1.176	Sox2	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr2_+_153241502_153241603	1.17434	Sox2	ENSMUST00000049863.5|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1 	ENSMUST00000099192.3|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1 	ENSMUST00000109794.1|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1
mm10_v2_chr11_-_121229293_121229322	1.17415	Sox2	ENSMUST00000106115.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000038709.7|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000147490.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr16_-_30550560_30550594	1.17075	Sox2	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr7_-_122021143_122021222	1.16231	Sox2	ENSMUST00000033160.8|Gga2|ENSMUSG00000030872.8|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm10_v2_chr7_+_80860909_80860972	1.16152	Sox2	ENSMUST00000132163.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2 	ENSMUST00000147125.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2
mm10_v2_chr11_+_101316200_101316275	1.15756	Sox2	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr7_-_111082997_111083037	1.15748	Sox2	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr6_+_100833606_100833663	1.15339	Sox2	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr11_-_78497458_78497539	1.14713	Sox2	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr10_-_32890462_32890462	1.14565	Sox2	ENSMUST00000092602.1|Nkain2|ENSMUSG00000069670.1|Na+/K+ transporting ATPase interacting 2
mm10_v2_chr1_-_55027473_55027484	1.14059	Sox2	ENSMUST00000027127.7|Sf3b1|ENSMUSG00000025982.7|splicing factor 3b, subunit 1
mm10_v2_chr18_+_76241892_76242046	1.14049	Sox2	ENSMUST00000171256.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chrX_+_93654863_93654981	1.14022	Sox2	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr8_+_33732237_33732339	1.14014	Sox2	ENSMUST00000171010.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr18_+_76242135_76242174	1.13946	Sox2	ENSMUST00000172198.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr9_+_35267857_35267894	1.13917	Sox2	ENSMUST00000034543.4|Rpusd4|ENSMUSG00000032044.4|RNA pseudouridylate synthase domain containing 4
mm10_v2_chr16_+_62814676_62814703	1.13711	Sox2	ENSMUST00000055557.5|Stx19|ENSMUSG00000047854.5|syntaxin 19
mm10_v2_chr7_-_111779963_111779993	1.13696	Sox2	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr12_+_8674129_8674150	1.13544	Sox2	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr1_+_81077274_81077327	1.13229	Sox2	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr7_-_128740471_128740525	1.1299	Sox2	ENSMUST00000119081.1|Mcmbp|ENSMUSG00000048170.8|MCM (minichromosome maintenance deficient) binding protein 	ENSMUST00000057557.7|Mcmbp|ENSMUSG00000048170.8|MCM (minichromosome maintenance deficient) binding protein
mm10_v2_chr10_+_61475782_61475834	1.12293	Sox2	ENSMUST00000049242.7|Lrrc20|ENSMUSG00000037151.7|leucine rich repeat containing 20
mm10_v2_chr14_+_26638074_26638151	1.11923	Sox2	ENSMUST00000022429.2|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr1_+_158362261_158362304	1.11861	Sox2	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr5_-_114091358_114091404	1.11007	Sox2	ENSMUST00000150106.1|Svop|ENSMUSG00000042078.8|SV2 related protein
mm10_v2_chr1_-_33814591_33814600	1.10951	Sox2	ENSMUST00000019861.6|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr11_+_3289880_3289993	1.10526	Sox2	ENSMUST00000110043.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1 	ENSMUST00000094471.3|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr2_-_7396192_7396241	1.10258	Sox2	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr12_+_3891728_3891801	1.10139	Sox2	ENSMUST00000172689.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000111186.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr9_+_107569112_107569135	1.10032	Sox2	ENSMUST00000010191.7|Hyal2|ENSMUSG00000010047.7|hyaluronoglucosaminidase 2
mm10_v2_chr5_-_111761697_111761727	1.09971	Sox2	ENSMUST00000129146.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000137398.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000129065.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene
mm10_v2_chr18_+_11839220_11839475	1.09162	Sox2	ENSMUST00000171109.1|Cables1|ENSMUSG00000040957.8|CDK5 and Abl enzyme substrate 1 	ENSMUST00000046948.8|Cables1|ENSMUSG00000040957.8|CDK5 and Abl enzyme substrate 1
mm10_v2_chr6_-_28397999_28398023	1.09079	Sox2	ENSMUST00000035930.4|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800
mm10_v2_chr4_+_40723084_40723117	1.08331	Sox2	ENSMUST00000149794.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr5_+_34336928_34336937	1.0815	Sox2	ENSMUST00000182047.1|Rnf4|ENSMUSG00000029110.7|ring finger protein 4
mm10_v2_chr13_+_55635002_55635036	1.07998	Sox2	ENSMUST00000172272.1|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENSMUST00000099479.3|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
mm10_v2_chr11_-_106920359_106920643	1.07771	Sox2	ENSMUST00000167787.1|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2 	ENSMUST00000092517.2|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr17_-_25433775_25433790	1.07672	Sox2	ENSMUST00000159610.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000159048.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000078496.5|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chrX_-_103981242_103981287	1.07441	Sox2	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr3_+_27317028_27317084	1.07081	Sox2	ENSMUST00000046383.5|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10 	ENSMUST00000174840.1|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10
mm10_v2_chr7_-_130519961_130520004	1.07005	Sox2	ENSMUST00000178534.1|Ate1|ENSMUSG00000030850.9|arginyltransferase 1 	ENSMUST00000094017.3|Ate1|ENSMUSG00000030850.9|arginyltransferase 1
mm10_v2_chr13_-_59694100_59694108	1.06734	Sox2	ENSMUST00000061597.5|4921517D22Rik|ENSMUSG00000049902.5|RIKEN cDNA 4921517D22 gene
mm10_v2_chr11_+_88068242_88068289	1.06643	Sox2	ENSMUST00000018521.4|Vezf1|ENSMUSG00000018377.4|vascular endothelial zinc finger 1
mm10_v2_chr8_+_33732049_33732137	1.06244	Sox2	ENSMUST00000167264.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr18_-_43059418_43059471	1.06199	Sox2	ENSMUST00000025377.7|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr5_+_147957310_147957357	1.06069	Sox2	ENSMUST00000085558.4|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2 	ENSMUST00000129092.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr19_+_6363719_6363810	1.05488	Sox2	ENSMUST00000113489.1|Sf1|ENSMUSG00000024949.11|splicing factor 1 	ENSMUST00000113488.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr11_+_72796254_72796268	1.05096	Sox2	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr2_-_126675224_126675352	1.05021	Sox2	ENSMUST00000124972.1|Gabpb1|ENSMUSG00000027361.9|GA repeat binding protein, beta 1
mm10_v2_chr6_-_88874597_88874796	1.04437	Sox2	ENSMUST00000061262.4|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2 	ENSMUST00000140455.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2 	ENSMUST00000145780.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr11_+_80477015_80477085	1.04165	Sox2	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr4_-_141623799_141623840	1.03952	Sox2	ENSMUST00000038661.7|Slc25a34|ENSMUSG00000040740.7|solute carrier family 25, member 34
mm10_v2_chr7_-_109960385_109960433	1.03237	Sox2	ENSMUST00000106722.1|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr9_+_69989466_69989539	1.03042	Sox2	ENSMUST00000034754.5|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000085393.6|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000117450.1|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2
mm10_v2_chr5_+_88583527_88583590	1.03016	Sox2	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr5_+_34549595_34549688	1.02917	Sox2	ENSMUST00000179943.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr4_+_108460000_108460030	1.02886	Sox2	ENSMUST00000097925.2|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr7_-_109960461_109960477	1.02461	Sox2	ENSMUST00000080437.6|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr17_+_32993123_32993201	1.0246	Sox2	ENSMUST00000087666.4|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952 	ENSMUST00000157017.1|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952
mm10_v2_chr2_-_39190687_39190746	1.02353	Sox2	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr5_+_33820695_33820835	1.0225	Sox2	ENSMUST00000075812.4|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000114397.2|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000155880.1|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human)
mm10_v2_chr5_+_88720855_88720876	1.01918	Sox2	ENSMUST00000113229.1|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B 	ENSMUST00000006424.7|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B
mm10_v2_chr11_+_95010277_95010293	1.0164	Sox2	ENSMUST00000124735.1|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr17_+_69383768_69383840	1.00874	Sox2	ENSMUST00000112676.2|Zbtb14|ENSMUSG00000049672.8|zinc finger and BTB domain containing 14
mm10_v2_chr9_-_57262591_57262609	1.00619	Sox2	ENSMUST00000034846.5|1700017B05Rik|ENSMUSG00000032300.6|RIKEN cDNA 1700017B05 gene
mm10_v2_chrX_+_93675088_93675161	1.00389	Sox2	ENSMUST00000045898.3|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr4_-_118179628_118179682	1.00003	Sox2	ENSMUST00000097911.2|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chr2_+_153649442_153649460	0.995032	Sox2	ENSMUST00000072997.3|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109773.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109774.2|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000081628.6|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000103151.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000088976.5|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109772.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000103150.3|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000056495.7|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B
mm10_v2_chr9_+_58554799_58554799	0.994905	Sox2	ENSMUST00000098676.2|Gm10657|ENSMUSG00000074273.2|predicted gene 10657
mm10_v2_chr12_+_84996487_84996496	0.990261	Sox2	ENSMUST00000101202.3|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr9_+_108392820_108392843	0.989159	Sox2	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr4_+_43641262_43641284	0.988235	Sox2	ENSMUST00000123351.1|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2 	ENSMUST00000128549.1|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr16_-_20426322_20426372	0.983401	Sox2	ENSMUST00000115547.2|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENSMUST00000096199.4|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr17_-_35909626_35909700	0.982258	Sox2	ENSMUST00000141132.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr10_+_82859198_82859217	0.976367	Sox2	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr11_+_3330781_3330812	0.974962	Sox2	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr16_-_34573526_34573554	0.962283	Sox2	ENSMUST00000114961.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr19_+_8953826_8953856	0.954787	Sox2	ENSMUST00000096239.5|Tut1|ENSMUSG00000071645.5|terminal uridylyl transferase 1, U6 snRNA-specific
mm10_v2_chr12_+_21111720_21111776	0.953386	Sox2	ENSMUST00000064595.8|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000101562.4|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000090834.6|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr8_-_40634776_40634806	0.952996	Sox2	ENSMUST00000048898.10|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7 	ENSMUST00000174205.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr15_+_86058727_86058793	0.948904	Sox2	ENSMUST00000138134.1|Gramd4|ENSMUSG00000035900.12|GRAM domain containing 4
mm10_v2_chr7_-_98361275_98361295	0.948491	Sox2	ENSMUST00000094161.4|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000164726.1|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000167405.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr10_-_63244135_63244170	0.947599	Sox2	ENSMUST00000054837.3|1700120B22Rik|ENSMUSG00000045391.3|RIKEN cDNA 1700120B22 gene
mm10_v2_chr13_+_40886758_40886818	0.940605	Sox2	ENSMUST00000069958.7|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr11_+_106216926_106216968	0.940335	Sox2	ENSMUST00000021046.5|Ddx42|ENSMUSG00000020705.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm10_v2_chr4_+_116558056_116558090	0.939749	Sox2	ENSMUST00000106475.1|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr13_+_56702983_56703112	0.937597	Sox2	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr2_-_152831112_152831326	0.932545	Sox2	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr18_+_11633276_11633357	0.93018	Sox2	ENSMUST00000115861.2|Rbbp8|ENSMUSG00000041238.9|retinoblastoma binding protein 8
mm10_v2_chr3_-_10351313_10351342	0.926377	Sox2	ENSMUST00000108377.1|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1 	ENSMUST00000037839.5|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1
mm10_v2_chr7_-_28598140_28598185	0.925669	Sox2	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chrX_+_112600526_112600526	0.925191	Sox2	ENSMUST00000113409.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr11_+_69846610_69846659	0.924449	Sox2	ENSMUST00000152566.1|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3 	ENSMUST00000108633.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chrX_-_38576166_38576187	0.923478	Sox2	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr11_+_101316917_101316977	0.922396	Sox2	ENSMUST00000151385.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr2_-_6884940_6884957	0.921533	Sox2	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr4_-_129742275_129742312	0.914393	Sox2	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr8_+_61224162_61224174	0.91371	Sox2	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr13_+_4191163_4191200	0.906896	Sox2	ENSMUST00000021634.2|Akr1c13|ENSMUSG00000021213.5|aldo-keto reductase family 1, member C13
mm10_v2_chrX_+_162901226_162901261	0.906328	Sox2	ENSMUST00000101095.2|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr4_-_36136463_36136463	0.906268	Sox2	ENSMUST00000098151.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr3_+_88206786_88206826	0.905172	Sox2	ENSMUST00000181134.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764 	ENSMUST00000181550.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764
mm10_v2_chr11_+_72796164_72796246	0.904098	Sox2	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr12_+_76081645_76081661	0.902034	Sox2	ENSMUST00000154509.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr16_+_96235801_96235801	0.901382	Sox2	ENSMUST00000113800.2|B3galt5|ENSMUSG00000074892.3|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm10_v2_chr11_+_102393403_102393496	0.898008	Sox2	ENSMUST00000107105.2|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000107102.1|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000107103.1|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000006750.7|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A
mm10_v2_chr12_+_38780817_38780854	0.891671	Sox2	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr2_-_73775341_73775378	0.889478	Sox2	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr5_+_141856692_141856787	0.889033	Sox2	ENSMUST00000074546.6|Sdk1|ENSMUSG00000039683.10|sidekick homolog 1 (chicken)
mm10_v2_chr6_+_115675983_115676004	0.886713	Sox2	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr17_-_88065028_88065028	0.885553	Sox2	ENSMUST00000130379.1|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr10_+_67185730_67185768	0.869938	Sox2	ENSMUST00000173689.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr11_+_4883186_4883222	0.869011	Sox2	ENSMUST00000139737.1|Nipsnap1|ENSMUSG00000034285.9|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm10_v2_chr11_-_33843526_33843629	0.86893	Sox2	ENSMUST00000065970.5|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1 	ENSMUST00000109340.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr14_-_34310503_34310560	0.868634	Sox2	ENSMUST00000111917.1|Fam35a|ENSMUSG00000041471.8|family with sequence similarity 35, member A
mm10_v2_chrX_+_159708593_159708612	0.867441	Sox2	ENSMUST00000080394.6|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr11_+_20631956_20632006	0.865101	Sox2	ENSMUST00000109586.2|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr6_-_56797637_56797757	0.858348	Sox2	ENSMUST00000114323.1|Kbtbd2|ENSMUSG00000059486.5|kelch repeat and BTB (POZ) domain containing 2
mm10_v2_chr8_+_33731867_33731946	0.851908	Sox2	ENSMUST00000170705.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr1_+_81077204_81077252	0.851606	Sox2	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr19_+_8941865_8942050	0.851307	Sox2	ENSMUST00000096240.2|Mta2|ENSMUSG00000071646.3|metastasis-associated gene family, member 2
mm10_v2_chr11_-_54787597_54787711	0.848633	Sox2	ENSMUST00000153209.1|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2 	ENSMUST00000064104.6|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2
mm10_v2_chr19_+_21272276_21272296	0.844055	Sox2	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chr17_-_71460395_71460395	0.844034	Sox2	ENSMUST00000180522.1|Gm4707|ENSMUSG00000091831.4|predicted gene 4707
mm10_v2_chr18_-_34597468_34597468	0.843756	Sox2	ENSMUST00000056932.2|4933408B17Rik|ENSMUSG00000049357.5|RIKEN cDNA 4933408B17 gene
mm10_v2_chr14_+_26638237_26638347	0.842776	Sox2	ENSMUST00000112318.3|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr14_+_79515618_79515694	0.837813	Sox2	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr11_+_105181527_105181598	0.83477	Sox2	ENSMUST00000106941.2|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis)
mm10_v2_chr11_+_3895223_3895310	0.82953	Sox2	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr6_+_124916863_124916863	0.828377	Sox2	ENSMUST00000069553.2|A230083G16Rik|ENSMUSG00000055818.2|RIKEN cDNA A230083G16 gene
mm10_v2_chr11_+_51261719_51261731	0.825707	Sox2	ENSMUST00000130641.1|Clk4|ENSMUSG00000020385.10|CDC like kinase 4
mm10_v2_chr7_+_16875302_16875392	0.824681	Sox2	ENSMUST00000108493.1|Dact3|ENSMUSG00000078794.3|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm10_v2_chr9_-_66069702_66069741	0.822597	Sox2	ENSMUST00000044711.5|Snx22|ENSMUSG00000039452.5|sorting nexin 22
mm10_v2_chr12_-_80436571_80436603	0.821406	Sox2	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr2_+_72297895_72297912	0.820786	Sox2	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr5_-_142906702_142906754	0.817851	Sox2	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr4_+_138217235_138217310	0.812289	Sox2	ENSMUST00000130071.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr5_-_149636331_149636376	0.807968	Sox2	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr1_+_191717834_191717904	0.806229	Sox2	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr11_-_98729374_98729435	0.80328	Sox2	ENSMUST00000126565.1|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000100500.2|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000017354.6|Med24|ENSMUSG00000017210.8|mediator complex subunit 24
mm10_v2_chr11_+_58948890_58948920	0.802097	Sox2	ENSMUST00000078267.3|Hist3h2ba|ENSMUSG00000056895.3|histone cluster 3, H2ba
mm10_v2_chr15_-_84557776_84557875	0.796885	Sox2	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr11_+_75679542_75679637	0.794437	Sox2	ENSMUST00000147718.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr4_+_140701466_140701509	0.793369	Sox2	ENSMUST00000038893.5|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2 	ENSMUST00000138808.1|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr5_+_34549568_34549581	0.791887	Sox2	ENSMUST00000118545.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr11_-_6444352_6444443	0.789961	Sox2	ENSMUST00000093346.5|H2afv|ENSMUSG00000041126.10|H2A histone family, member V 	ENSMUST00000109737.2|H2afv|ENSMUSG00000041126.10|H2A histone family, member V
mm10_v2_chr17_+_65783355_65783599	0.789941	Sox2	ENSMUST00000073104.4|Ppp4r1|ENSMUSG00000061950.11|protein phosphatase 4, regulatory subunit 1 	ENSMUST00000160664.1|Ppp4r1|ENSMUSG00000061950.11|protein phosphatase 4, regulatory subunit 1 	ENSMUST00000162272.1|Ppp4r1|ENSMUSG00000061950.11|protein phosphatase 4, regulatory subunit 1
mm10_v2_chr19_-_40588338_40588371	0.788349	Sox2	ENSMUST00000176939.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr10_-_22731336_22731447	0.786736	Sox2	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chr7_-_98361310_98361328	0.785934	Sox2	ENSMUST00000165257.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr9_+_37208291_37208360	0.776367	Sox2	ENSMUST00000034632.8|Tmem218|ENSMUSG00000032121.8|transmembrane protein 218
mm10_v2_chr17_-_87282793_87282821	0.764239	Sox2	ENSMUST00000146560.2|4833418N02Rik|ENSMUSG00000085287.2|RIKEN cDNA 4833418N02 gene
mm10_v2_chr2_+_32151074_32151262	0.763486	Sox2	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr5_-_140649018_140649052	0.760586	Sox2	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
mm10_v2_chr7_+_46397648_46397783	0.757051	Sox2	ENSMUST00000160433.1|Kcnc1|ENSMUSG00000058975.6|potassium voltage gated channel, Shaw-related subfamily, member 1
mm10_v2_chr7_-_78578308_78578408	0.748642	Sox2	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr18_-_68300194_68300228	0.747735	Sox2	ENSMUST00000152193.1|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
mm10_v2_chr10_+_75060885_75060901	0.747012	Sox2	ENSMUST00000164107.1|Bcr|ENSMUSG00000009681.9|breakpoint cluster region
mm10_v2_chr2_-_116067391_116067444	0.744367	Sox2	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chrX_-_38576189_38576204	0.744183	Sox2	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr19_-_5802640_5802675	0.73694	Sox2	ENSMUST00000173523.1|Malat1|ENSMUSG00000092341.2|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 	ENSMUST00000173499.1|Malat1|ENSMUSG00000092341.2|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 	ENSMUST00000172812.2|Malat1|ENSMUSG00000092341.2|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
mm10_v2_chr2_-_140671400_140671427	0.736099	Sox2	ENSMUST00000056760.3|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr13_+_14063776_14063822	0.735998	Sox2	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr2_-_69586021_69586065	0.735748	Sox2	ENSMUST00000100051.2|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000092551.4|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000080953.5|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2
mm10_v2_chr6_-_72958465_72958496	0.735057	Sox2	ENSMUST00000114050.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr11_-_87074055_87074071	0.729349	Sox2	ENSMUST00000020804.7|Gdpd1|ENSMUSG00000061666.6|glycerophosphodiester phosphodiesterase domain containing 1
mm10_v2_chr3_+_103058302_103058352	0.726383	Sox2	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chr10_-_94035705_94035769	0.720348	Sox2	ENSMUST00000118077.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000118205.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000047711.6|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr4_+_136284658_136284686	0.720083	Sox2	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr7_-_34654342_34654398	0.717284	Sox2	ENSMUST00000108069.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr12_+_3365108_3365142	0.716822	Sox2	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr13_-_78196373_78196440	0.713027	Sox2	ENSMUST00000125176.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr9_-_107872821_107872844	0.709743	Sox2	ENSMUST00000183032.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr8_+_92827273_92827395	0.70911	Sox2	ENSMUST00000034187.7|Mmp2|ENSMUSG00000031740.7|matrix metallopeptidase 2
mm10_v2_chr4_-_129696817_129696843	0.708953	Sox2	ENSMUST00000102588.3|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr9_-_110117379_110117445	0.707431	Sox2	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr11_+_115381906_115381933	0.706611	Sox2	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr2_-_63184170_63184195	0.705957	Sox2	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr5_-_147400352_147400489	0.705438	Sox2	ENSMUST00000049324.8|Flt3|ENSMUSG00000042817.11|FMS-like tyrosine kinase 3 	ENSMUST00000176456.1|Flt3|ENSMUSG00000042817.11|FMS-like tyrosine kinase 3 	ENSMUST00000110549.1|Flt3|ENSMUSG00000042817.11|FMS-like tyrosine kinase 3
mm10_v2_chr12_+_52516077_52516077	0.701155	Sox2	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr4_+_98546710_98546739	0.700507	Sox2	ENSMUST00000102792.3|Inadl|ENSMUSG00000061859.10|InaD-like (Drosophila)
mm10_v2_chr15_-_103251465_103251705	0.698888	Sox2	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr5_+_43868802_43868866	0.698463	Sox2	ENSMUST00000030964.4|Cd38|ENSMUSG00000029084.4|CD38 antigen
mm10_v2_chrX_+_153498202_153498232	0.694466	Sox2	ENSMUST00000060714.8|Ubqln2|ENSMUSG00000050148.8|ubiquilin 2
mm10_v2_chr19_+_55895508_55895511	0.693127	Sox2	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr17_+_37002610_37002670	0.69254	Sox2	ENSMUST00000173921.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57 	ENSMUST00000172580.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr9_-_88482532_88482587	0.692444	Sox2	ENSMUST00000173801.1|Syncrip|ENSMUSG00000032423.6|synaptotagmin binding, cytoplasmic RNA interacting protein 	ENSMUST00000069221.5|Syncrip|ENSMUSG00000032423.6|synaptotagmin binding, cytoplasmic RNA interacting protein 	ENSMUST00000172508.1|Syncrip|ENSMUSG00000032423.6|synaptotagmin binding, cytoplasmic RNA interacting protein
mm10_v2_chr6_+_86404336_86404473	0.691946	Sox2	ENSMUST00000113713.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000113708.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr2_+_68117713_68117713	0.6901	Sox2	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr11_+_80383397_80383415	0.687206	Sox2	ENSMUST00000053740.8|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr6_-_49264014_49264060	0.686757	Sox2	ENSMUST00000031841.7|Tra2a|ENSMUSG00000029817.9|transformer 2 alpha homolog (Drosophila)
mm10_v2_chr3_-_94436574_94436616	0.686472	Sox2	ENSMUST00000029787.4|Oaz3|ENSMUSG00000028141.4|ornithine decarboxylase antizyme 3
mm10_v2_chr17_-_50094277_50094332	0.683965	Sox2	ENSMUST00000113195.1|Rftn1|ENSMUSG00000039316.8|raftlin lipid raft linker 1
mm10_v2_chr17_+_53479212_53479237	0.682766	Sox2	ENSMUST00000017975.5|Rab5a|ENSMUSG00000017831.7|RAB5A, member RAS oncogene family
mm10_v2_chr2_-_28583239_28583279	0.68232	Sox2	ENSMUST00000028157.8|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr19_-_45783512_45783558	0.6804	Sox2	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr2_+_128967383_128967443	0.679089	Sox2	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr19_-_28967794_28967852	0.677802	Sox2	ENSMUST00000162110.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr5_+_108694222_108694255	0.676967	Sox2	ENSMUST00000013633.8|Fgfrl1|ENSMUSG00000008090.8|fibroblast growth factor receptor-like 1 	ENSMUST00000112560.3|Fgfrl1|ENSMUSG00000008090.8|fibroblast growth factor receptor-like 1
mm10_v2_chr4_+_34550937_34550937	0.676561	Sox2	ENSMUST00000084299.5|Akirin2|ENSMUSG00000028291.7|akirin 2
mm10_v2_chr10_+_128303322_128303352	0.676339	Sox2	ENSMUST00000005825.6|Pan2|ENSMUSG00000005682.8|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr7_-_16874845_16874889	0.672391	Sox2	ENSMUST00000181501.1|9330104G04Rik|ENSMUSG00000097842.1|RIKEN cDNA 9330104G04 gene
mm10_v2_chr5_+_138085083_138085147	0.670079	Sox2	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr10_-_57532416_57532487	0.668217	Sox2	ENSMUST00000169122.1|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr4_+_154869585_154869636	0.660146	Sox2	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr4_-_155785864_155785880	0.656989	Sox2	ENSMUST00000097742.2|Tmem88b|ENSMUSG00000073680.2|transmembrane protein 88B
mm10_v2_chr1_+_39900883_39900963	0.655311	Sox2	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr9_-_107872687_107872747	0.654989	Sox2	ENSMUST00000035201.6|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr3_+_146500071_146500109	0.651867	Sox2	ENSMUST00000119130.1|Gng5|ENSMUSG00000068523.6|guanine nucleotide binding protein (G protein), gamma 5
mm10_v2_chr18_+_24205722_24205767	0.651256	Sox2	ENSMUST00000170243.1|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr2_-_170406501_170406518	0.65036	Sox2	ENSMUST00000154650.1|Bcas1|ENSMUSG00000013523.7|breast carcinoma amplified sequence 1
mm10_v2_chr1_+_7088917_7088993	0.646225	Sox2	ENSMUST00000061280.10|Pcmtd1|ENSMUSG00000051285.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 	ENSMUST00000182114.1|Pcmtd1|ENSMUSG00000051285.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm10_v2_chr7_-_142095266_142095306	0.646193	Sox2	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr6_-_116628921_116628934	0.639969	Sox2	ENSMUST00000057540.5|Zfp422|ENSMUSG00000059878.6|zinc finger protein 422
mm10_v2_chr6_-_18514802_18514869	0.637618	Sox2	ENSMUST00000090601.5|Cttnbp2|ENSMUSG00000000416.10|cortactin binding protein 2
mm10_v2_chr1_-_34843050_34843065	0.636818	Sox2	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr1_+_17727034_17727088	0.636683	Sox2	ENSMUST00000159958.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000160305.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000095075.4|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1
mm10_v2_chr4_-_129696579_129696620	0.635385	Sox2	ENSMUST00000137640.1|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr17_+_47140942_47140942	0.631973	Sox2	ENSMUST00000077951.7|Trerf1|ENSMUSG00000064043.7|transcriptional regulating factor 1
mm10_v2_chr7_+_139248477_139248532	0.621835	Sox2	ENSMUST00000093993.3|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B 	ENSMUST00000172136.1|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B
mm10_v2_chr11_+_95009852_95009890	0.621313	Sox2	ENSMUST00000055947.3|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr10_+_72309225_72309225	0.620171	Sox2	ENSMUST00000061324.4|Gm9923|ENSMUSG00000053830.3|predicted pseudogene 9923
mm10_v2_chr2_-_63184253_63184292	0.619564	Sox2	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr17_+_26252903_26252914	0.61737	Sox2	ENSMUST00000025023.7|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like
mm10_v2_chr7_-_126475082_126475130	0.615324	Sox2	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr3_+_88142328_88142483	0.608073	Sox2	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr3_-_69127098_69127113	0.602493	Sox2	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr6_+_39873271_39873271	0.596387	Sox2	ENSMUST00000180886.1|Tmem178b|ENSMUSG00000057716.6|transmembrane protein 178B
mm10_v2_chr18_-_43687695_43687773	0.595379	Sox2	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chrX_-_140543177_140543195	0.591434	Sox2	ENSMUST00000055738.5|Tsc22d3|ENSMUSG00000031431.7|TSC22 domain family, member 3
mm10_v2_chr15_-_100403243_100403270	0.591399	Sox2	ENSMUST00000124324.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr15_+_76343504_76343558	0.589152	Sox2	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
mm10_v2_chr9_-_57765845_57765876	0.584813	Sox2	ENSMUST00000065330.6|Clk3|ENSMUSG00000032316.7|CDC-like kinase 3
mm10_v2_chr2_+_60209887_60210073	0.582504	Sox2	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr5_-_28210168_28210179	0.579712	Sox2	ENSMUST00000117098.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr5_-_106696530_106696650	0.57468	Sox2	ENSMUST00000137285.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000124263.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112695.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000155495.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000135108.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr11_+_16951371_16951417	0.568822	Sox2	ENSMUST00000109635.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48 	ENSMUST00000061327.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48
mm10_v2_chrX_-_105929397_105929408	0.568289	Sox2	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr4_-_151996113_151996258	0.567455	Sox2	ENSMUST00000055688.9|Phf13|ENSMUSG00000047777.9|PHD finger protein 13
mm10_v2_chr4_-_43045686_43045825	0.567267	Sox2	ENSMUST00000107956.1|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B 	ENSMUST00000107957.1|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr17_-_87282771_87282786	0.563439	Sox2	ENSMUST00000161759.1|4833418N02Rik|ENSMUSG00000085287.2|RIKEN cDNA 4833418N02 gene
mm10_v2_chr1_-_36558349_36558366	0.562035	Sox2	ENSMUST00000114991.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000114992.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr4_-_152318458_152318654	0.562032	Sox2	ENSMUST00000170820.1|Rnf207|ENSMUSG00000058498.6|ring finger protein 207 	ENSMUST00000076183.5|Rnf207|ENSMUSG00000058498.6|ring finger protein 207
mm10_v2_chr1_+_82839449_82839518	0.559346	Sox2	ENSMUST00000113444.1|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1 	ENSMUST00000063380.4|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1
mm10_v2_chr11_+_121237216_121237289	0.552995	Sox2	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr2_-_11502025_11502049	0.552317	Sox2	ENSMUST00000114846.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr5_-_134456702_134456785	0.549726	Sox2	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr17_-_88065291_88065291	0.547472	Sox2	ENSMUST00000005504.8|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr19_-_4615453_4615512	0.543215	Sox2	ENSMUST00000053597.2|Lrfn4|ENSMUSG00000045045.7|leucine rich repeat and fibronectin type III domain containing 4
mm10_v2_chr12_-_108835845_108835893	0.541559	Sox2	ENSMUST00000021693.3|Slc25a29|ENSMUSG00000021265.3|solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29
mm10_v2_chr9_-_103761820_103761847	0.539127	Sox2	ENSMUST00000049452.8|Tmem108|ENSMUSG00000042757.9|transmembrane protein 108
mm10_v2_chr7_+_16944645_16944720	0.535684	Sox2	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr12_+_24831583_24831658	0.535343	Sox2	ENSMUST00000110942.3|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2 	ENSMUST00000078902.6|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2
mm10_v2_chr5_+_3543812_3543853	0.535037	Sox2	ENSMUST00000115527.3|Fam133b|ENSMUSG00000058503.7|family with sequence similarity 133, member B
mm10_v2_chr18_+_37755718_37755773	0.528517	Sox2	ENSMUST00000061279.7|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr12_+_86361112_86361131	0.526977	Sox2	ENSMUST00000116402.3|Esrrb|ENSMUSG00000021255.11|estrogen related receptor, beta
mm10_v2_chr7_-_83884289_83884341	0.526879	Sox2	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr8_+_86745679_86745699	0.525779	Sox2	ENSMUST00000098532.2|Gm10638|ENSMUSG00000074178.2|predicted gene 10638
mm10_v2_chr12_-_26415256_26415303	0.522228	Sox2	ENSMUST00000020971.6|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A 	ENSMUST00000062149.4|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A
mm10_v2_chr18_+_4921662_4921726	0.52217	Sox2	ENSMUST00000143254.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr10_-_81627797_81627797	0.519453	Sox2	ENSMUST00000042923.8|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr16_+_18348181_18348274	0.517866	Sox2	ENSMUST00000115614.2|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome 	ENSMUST00000115613.1|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome 	ENSMUST00000090103.3|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm10_v2_chr19_-_46039621_46039662	0.516108	Sox2	ENSMUST00000056931.7|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr19_+_6363671_6363704	0.510262	Sox2	ENSMUST00000131252.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr2_+_167932327_167932379	0.509427	Sox2	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr18_+_35965036_35965087	0.509349	Sox2	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr9_+_108508005_108508076	0.506992	Sox2	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr2_-_151009364_151009398	0.506821	Sox2	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr10_-_79874233_79874439	0.50472	Sox2	ENSMUST00000166023.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000167707.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000165601.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chr1_-_93101854_93101879	0.504206	Sox2	ENSMUST00000171796.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A 	ENSMUST00000171556.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr13_-_41220162_41220195	0.504011	Sox2	ENSMUST00000117096.1|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr1_+_175632169_175632185	0.503988	Sox2	ENSMUST00000097458.3|Kmo|ENSMUSG00000039783.9|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm10_v2_chr9_+_100643755_100643770	0.502845	Sox2	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr9_+_45906513_45906569	0.502384	Sox2	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr19_-_24961545_24961630	0.499764	Sox2	ENSMUST00000025815.8|Cbwd1|ENSMUSG00000024878.8|COBW domain containing 1
mm10_v2_chr9_-_65827544_65827576	0.498736	Sox2	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr4_-_132212060_132212130	0.497308	Sox2	ENSMUST00000085181.4|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr5_+_30853796_30853801	0.495563	Sox2	ENSMUST00000126284.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr19_-_4906598_4906632	0.494257	Sox2	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr18_+_35599219_35599269	0.491105	Sox2	ENSMUST00000115734.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr1_+_97770158_97770209	0.491081	Sox2	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr11_-_107470699_107470726	0.489576	Sox2	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr9_+_55208925_55208989	0.489374	Sox2	ENSMUST00000034859.8|Fbxo22|ENSMUSG00000032309.9|F-box protein 22
mm10_v2_chr14_-_26638183_26638183	0.488077	Sox2	ENSMUST00000166902.1|4930570N19Rik|ENSMUSG00000090861.1|RIKEN cDNA 4930570N19 gene
mm10_v2_chr11_+_105181793_105181982	0.484849	Sox2	ENSMUST00000092537.3|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis) 	ENSMUST00000015107.6|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis) 	ENSMUST00000145048.1|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis)
mm10_v2_chr6_+_86404257_86404319	0.48463	Sox2	ENSMUST00000095752.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000130967.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr12_-_40248073_40248086	0.480013	Sox2	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr7_+_24134148_24134184	0.476836	Sox2	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr5_+_148265307_148265345	0.47386	Sox2	ENSMUST00000110514.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr4_-_134012381_134012404	0.470632	Sox2	ENSMUST00000176113.1|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr17_+_37002574_37002596	0.470013	Sox2	ENSMUST00000173588.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr17_-_25273366_25273383	0.46804	Sox2	ENSMUST00000173084.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr10_-_81627257_81627320	0.460206	Sox2	ENSMUST00000143424.1|Sirt6|ENSMUSG00000034748.10|sirtuin 6 	ENSMUST00000119324.1|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr16_-_64786321_64786321	0.460032	Sox2	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chrX_+_162901762_162901870	0.456394	Sox2	ENSMUST00000112302.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2 	ENSMUST00000112301.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr5_+_74535535_74535558	0.454908	Sox2	ENSMUST00000121950.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr2_+_147012996_147013083	0.453153	Sox2	ENSMUST00000028921.5|Xrn2|ENSMUSG00000027433.5|5'-3' exoribonuclease 2
mm10_v2_chr9_+_13619990_13619990	0.452068	Sox2	ENSMUST00000159294.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr2_+_163122605_163122620	0.449378	Sox2	ENSMUST00000144092.1|Gm11454|ENSMUSG00000086152.1|predicted gene 11454
mm10_v2_chr2_-_28583189_28583230	0.448457	Sox2	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr2_-_165034821_165034867	0.448064	Sox2	ENSMUST00000153905.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000040381.8|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr4_-_21685782_21685805	0.446961	Sox2	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr15_-_36794498_36794547	0.436287	Sox2	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr12_+_8674681_8674765	0.435213	Sox2	ENSMUST00000168361.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000169750.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000163730.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr9_+_90162978_90163037	0.434661	Sox2	ENSMUST00000113060.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm10_v2_chr2_-_177578199_177578210	0.433551	Sox2	ENSMUST00000108945.1|Gm14406|ENSMUSG00000078865.2|predicted gene 14406 	ENSMUST00000108943.1|Gm14406|ENSMUSG00000078865.2|predicted gene 14406
mm10_v2_chr16_-_90284412_90284498	0.431379	Sox2	ENSMUST00000039280.7|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr6_+_70726430_70726472	0.430736	Sox2	ENSMUST00000103410.1|Igkc|ENSMUSG00000076609.1|immunoglobulin kappa constant
mm10_v2_chr5_+_64230285_64230312	0.421727	Sox2	ENSMUST00000119756.1|Tbc1d1|ENSMUSG00000029174.12|TBC1 domain family, member 1
mm10_v2_chr5_-_142817654_142817668	0.419546	Sox2	ENSMUST00000151477.1|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr2_-_7395879_7395912	0.415866	Sox2	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr17_-_87446854_87446935	0.414366	Sox2	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr2_-_6721890_6721928	0.412411	Sox2	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_+_114568016_114568016	0.410446	Sox2	ENSMUST00000043650.7|Fam222a|ENSMUSG00000041930.7|family with sequence similarity 222, member A
mm10_v2_chr9_+_59291565_59291577	0.405164	Sox2	ENSMUST00000026266.7|Adpgk|ENSMUSG00000025236.10|ADP-dependent glucokinase
mm10_v2_chr5_-_143732273_143732316	0.403485	Sox2	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr10_+_39369750_39369804	0.401864	Sox2	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr11_+_69846374_69846387	0.401666	Sox2	ENSMUST00000108632.1|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr2_+_160731684_160731760	0.40078	Sox2	ENSMUST00000174885.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1 	ENSMUST00000109462.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr7_+_12834743_12834811	0.393528	Sox2	ENSMUST00000004614.8|Zfp110|ENSMUSG00000058638.7|zinc finger protein 110
mm10_v2_chr5_+_74535449_74535524	0.390087	Sox2	ENSMUST00000080164.5|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113536.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000122245.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000120618.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113535.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113534.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr5_+_117976761_117976803	0.389701	Sox2	ENSMUST00000035579.6|Fbxo21|ENSMUSG00000032898.6|F-box protein 21
mm10_v2_chr7_-_109986250_109986306	0.388673	Sox2	ENSMUST00000119929.1|Tmem41b|ENSMUSG00000047554.7|transmembrane protein 41B
mm10_v2_chr16_+_24393350_24393428	0.38851	Sox2	ENSMUST00000038053.6|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr11_-_33843405_33843461	0.386708	Sox2	ENSMUST00000101368.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr4_-_11386757_11386783	0.386501	Sox2	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr12_+_44269145_44269227	0.386151	Sox2	ENSMUST00000043082.8|Pnpla8|ENSMUSG00000036257.8|patatin-like phospholipase domain containing 8
mm10_v2_chr4_+_53779694_53779706	0.385192	Sox2	ENSMUST00000030124.3|Tal2|ENSMUSG00000028417.3|T cell acute lymphocytic leukemia 2
mm10_v2_chr2_+_156065738_156065760	0.384387	Sox2	ENSMUST00000137966.1|Spag4|ENSMUSG00000038180.5|sperm associated antigen 4
mm10_v2_chr19_+_30030439_30030528	0.383868	Sox2	ENSMUST00000025739.7|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr17_-_25273562_25273638	0.381697	Sox2	ENSMUST00000173621.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000172520.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr3_-_97227364_97227421	0.377504	Sox2	ENSMUST00000046521.7|Bcl9|ENSMUSG00000038256.9|B cell CLL/lymphoma 9
mm10_v2_chr16_-_8672145_8672161	0.372973	Sox2	ENSMUST00000008537.8|Carhsp1|ENSMUSG00000008393.8|calcium regulated heat stable protein 1
mm10_v2_chr5_+_148265265_148265305	0.371702	Sox2	ENSMUST00000071878.5|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr11_+_58330744_58330777	0.37062	Sox2	ENSMUST00000073128.6|Sh3bp5l|ENSMUSG00000013646.11|SH3 binding domain protein 5 like
mm10_v2_chr9_+_90163057_90163101	0.365036	Sox2	ENSMUST00000113059.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 	ENSMUST00000167122.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm10_v2_chr2_+_32876114_32876241	0.362878	Sox2	ENSMUST00000028135.8|Fam129b|ENSMUSG00000026796.10|family with sequence similarity 129, member B
mm10_v2_chr7_+_97081711_97081778	0.362347	Sox2	ENSMUST00000004622.5|Gab2|ENSMUSG00000004508.5|growth factor receptor bound protein 2-associated protein 2
mm10_v2_chr1_-_88702121_88702221	0.356917	Sox2	ENSMUST00000159814.1|Arl4c|ENSMUSG00000049866.6|ADP-ribosylation factor-like 4C
mm10_v2_chr8_+_123332676_123332740	0.355313	Sox2	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr12_+_76370266_76370266	0.355267	Sox2	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr7_+_79273201_79273270	0.350619	Sox2	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr2_-_6721606_6721629	0.349776	Sox2	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr13_-_9765137_9765321	0.348545	Sox2	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr14_-_52197216_52197267	0.345536	Sox2	ENSMUST00000046709.7|Supt16|ENSMUSG00000035726.7|suppressor of Ty 16
mm10_v2_chr6_+_54681687_54681783	0.342814	Sox2	ENSMUST00000046276.6|2410066E13Rik|ENSMUSG00000038065.7|RIKEN cDNA 2410066E13 gene
mm10_v2_chr11_+_6389330_6389397	0.341658	Sox2	ENSMUST00000012612.4|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr8_+_11728105_11728143	0.340834	Sox2	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr4_+_137862270_137862321	0.340239	Sox2	ENSMUST00000130407.1|Ece1|ENSMUSG00000057530.8|endothelin converting enzyme 1
mm10_v2_chr2_-_52676571_52676588	0.337743	Sox2	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr2_+_90987603_90987746	0.334641	Sox2	ENSMUST00000111452.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111455.2|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr12_+_108605757_108605814	0.333008	Sox2	ENSMUST00000109854.2|Evl|ENSMUSG00000021262.8|Ena-vasodilator stimulated phosphoprotein
mm10_v2_chr19_-_7241216_7241226	0.332914	Sox2	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr15_+_75704280_75704394	0.331233	Sox2	ENSMUST00000121137.1|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1 	ENSMUST00000023244.5|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1
mm10_v2_chr9_-_15045378_15045502	0.330711	Sox2	ENSMUST00000164273.1|Panx1|ENSMUSG00000031934.7|pannexin 1
mm10_v2_chr6_+_143167210_143167267	0.327442	Sox2	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr15_-_50882806_50882822	0.325534	Sox2	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr10_+_45067167_45067279	0.325144	Sox2	ENSMUST00000099858.2|Prep|ENSMUSG00000019849.10|prolyl endopeptidase
mm10_v2_chr6_+_129862649_129862649	0.321766	Sox2	ENSMUST00000171980.1|Gm17631|ENSMUSG00000092047.1|predicted gene, 17631
mm10_v2_chr7_-_25005895_25005937	0.321487	Sox2	ENSMUST00000102858.3|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENSMUST00000080882.6|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm10_v2_chr5_+_21646033_21646057	0.319699	Sox2	ENSMUST00000095495.2|Armc10|ENSMUSG00000038525.10|armadillo repeat containing 10
mm10_v2_chr1_+_171895664_171895664	0.319673	Sox2	ENSMUST00000097466.2|Gm10521|ENSMUSG00000073492.2|predicted gene 10521
mm10_v2_chr2_+_175010241_175010319	0.31292	Sox2	ENSMUST00000109069.1|Gm14444|ENSMUSG00000078906.3|predicted gene 14444 	ENSMUST00000109070.2|Gm14444|ENSMUSG00000078906.3|predicted gene 14444
mm10_v2_chr15_-_72034202_72034227	0.312361	Sox2	ENSMUST00000159993.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr19_-_3575708_3575756	0.309503	Sox2	ENSMUST00000113997.2|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000025846.8|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000172362.1|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3
mm10_v2_chr15_+_75940952_75941015	0.307943	Sox2	ENSMUST00000037260.6|Zfp623|ENSMUSG00000050846.8|zinc finger protein 623
mm10_v2_chr5_-_137786651_137786668	0.307427	Sox2	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr7_+_4915202_4915230	0.305441	Sox2	ENSMUST00000116354.2|Zfp628|ENSMUSG00000074406.4|zinc finger protein 628
mm10_v2_chr6_+_145211134_145211222	0.301592	Sox2	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr5_-_140830430_140830453	0.300449	Sox2	ENSMUST00000000153.4|Gna12|ENSMUSG00000000149.6|guanine nucleotide binding protein, alpha 12
mm10_v2_chr3_-_158031705_158031774	0.299544	Sox2	ENSMUST00000072875.8|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr4_+_135855707_135855747	0.299298	Sox2	ENSMUST00000105853.3|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000097844.2|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000102544.2|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000126641.1|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10
mm10_v2_chr2_-_168206875_168206922	0.298365	Sox2	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr7_-_30169701_30169766	0.295576	Sox2	ENSMUST00000062181.7|Zfp146|ENSMUSG00000037029.7|zinc finger protein 146
mm10_v2_chr1_-_4880669_4880699	0.290741	Sox2	ENSMUST00000078030.3|Gm6104|ENSMUSG00000062588.3|predicted gene 6104
mm10_v2_chr4_-_140648736_140648781	0.289317	Sox2	ENSMUST00000039204.3|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000105799.1|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000097820.2|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr11_-_116168138_116168205	0.288212	Sox2	ENSMUST00000139020.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000103031.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000124828.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1
mm10_v2_chr11_+_6389442_6389471	0.285697	Sox2	ENSMUST00000109786.1|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr4_+_43406435_43406615	0.285061	Sox2	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr12_-_83597140_83597177	0.283504	Sox2	ENSMUST00000048319.4|Zfyve1|ENSMUSG00000042628.7|zinc finger, FYVE domain containing 1
mm10_v2_chr2_-_79908428_79908438	0.281488	Sox2	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr14_-_15438974_15439002	0.280224	Sox2	ENSMUST00000055211.4|Lrrc3b|ENSMUSG00000045201.5|leucine rich repeat containing 3B
mm10_v2_chr1_+_93990509_93990509	0.278138	Sox2	ENSMUST00000097632.3|Gm6086|ENSMUSG00000073608.3|predicted gene 6086
mm10_v2_chr3_+_135826075_135826090	0.276639	Sox2	ENSMUST00000029810.5|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr7_+_141392164_141392213	0.276586	Sox2	ENSMUST00000026576.4|Taldo1|ENSMUSG00000025503.4|transaldolase 1
mm10_v2_chr11_-_76217490_76217664	0.27605	Sox2	ENSMUST00000102500.4|Gemin4|ENSMUSG00000049396.6|gem (nuclear organelle) associated protein 4
mm10_v2_chr7_-_127725616_127725616	0.275453	Sox2	ENSMUST00000076091.2|Ctf2|ENSMUSG00000060034.4|cardiotrophin 2
mm10_v2_chr16_-_89818338_89818356	0.272493	Sox2	ENSMUST00000164263.2|Tiam1|ENSMUSG00000002489.9|T cell lymphoma invasion and metastasis 1
mm10_v2_chr5_-_33274966_33275010	0.270574	Sox2	ENSMUST00000079746.6|Ctbp1|ENSMUSG00000037373.9|C-terminal binding protein 1
mm10_v2_chr8_-_11635745_11635765	0.266778	Sox2	ENSMUST00000033905.5|Ankrd10|ENSMUSG00000031508.7|ankyrin repeat domain 10 	ENSMUST00000169782.1|Ankrd10|ENSMUSG00000031508.7|ankyrin repeat domain 10
mm10_v2_chr18_+_60212080_60212122	0.262812	Sox2	ENSMUST00000031549.5|Gm4951|ENSMUSG00000073555.1|predicted gene 4951
mm10_v2_chr8_+_69808672_69808742	0.25978	Sox2	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr3_+_7503423_7503503	0.259628	Sox2	ENSMUST00000051064.3|Zc2hc1a|ENSMUSG00000043542.7|zinc finger, C2HC-type containing 1A
mm10_v2_chr5_+_148265202_148265263	0.25537	Sox2	ENSMUST00000110515.2|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr7_-_141429351_141429429	0.255015	Sox2	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr7_-_105574324_105574402	0.25323	Sox2	ENSMUST00000081165.7|Apbb1|ENSMUSG00000037032.9|amyloid beta (A4) precursor protein-binding, family B, member 1
mm10_v2_chr11_+_20201406_20201448	0.253189	Sox2	ENSMUST00000020358.5|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109602.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109601.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family
mm10_v2_chr16_+_78301458_78301496	0.252939	Sox2	ENSMUST00000023572.7|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr5_+_143817786_143817818	0.252856	Sox2	ENSMUST00000100487.4|Eif2ak1|ENSMUSG00000029613.9|eukaryotic translation initiation factor 2 alpha kinase 1
mm10_v2_chr2_+_49451486_49451559	0.245872	Sox2	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr16_-_3908639_3908689	0.245353	Sox2	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr7_-_141429433_141429491	0.244973	Sox2	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr5_+_130187158_130187166	0.2405	Sox2	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr1_-_58424042_58424066	0.237626	Sox2	ENSMUST00000034868.7|Clk1|ENSMUSG00000026034.11|CDC-like kinase 1
mm10_v2_chr1_-_5070281_5070288	0.235907	Sox2	ENSMUST00000147158.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20 	ENSMUST00000118000.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20
mm10_v2_chr10_-_11080956_11081023	0.23383	Sox2	ENSMUST00000105560.1|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1
mm10_v2_chr11_-_50916136_50916179	0.233592	Sox2	ENSMUST00000116378.1|Zfp2|ENSMUSG00000049321.11|zinc finger protein 2 	ENSMUST00000109128.1|Zfp2|ENSMUSG00000049321.11|zinc finger protein 2
mm10_v2_chr10_-_62486575_62486604	0.232629	Sox2	ENSMUST00000092473.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr5_-_122988533_122988705	0.232114	Sox2	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr2_+_120476911_120476976	0.22907	Sox2	ENSMUST00000110716.1|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000028748.6|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000090028.5|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000110719.2|Capn3|ENSMUSG00000079110.5|calpain 3
mm10_v2_chr17_-_35910032_35910076	0.227258	Sox2	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr17_-_35121990_35122053	0.225997	Sox2	ENSMUST00000173915.1|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide 	ENSMUST00000172765.2|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide
mm10_v2_chr11_+_69846665_69846681	0.221772	Sox2	ENSMUST00000019605.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr10_+_62133082_62133098	0.220037	Sox2	ENSMUST00000050103.1|Neurog3|ENSMUSG00000044312.3|neurogenin 3
mm10_v2_chr6_+_86628174_86628208	0.216558	Sox2	ENSMUST00000043400.6|Asprv1|ENSMUSG00000033508.6|aspartic peptidase, retroviral-like 1
mm10_v2_chr13_+_21945084_21945140	0.214828	Sox2	ENSMUST00000176511.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000102978.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000152258.2|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like)
mm10_v2_chr16_-_31275277_31275290	0.21471	Sox2	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr18_+_35965088_35965110	0.213523	Sox2	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr16_-_17125106_17125146	0.209092	Sox2	ENSMUST00000093336.6|2610318N02Rik|ENSMUSG00000049916.9|RIKEN cDNA 2610318N02 gene
mm10_v2_chr9_+_69397897_69397928	0.207456	Sox2	ENSMUST00000034761.8|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000125938.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2
mm10_v2_chr11_+_69580359_69580382	0.207167	Sox2	ENSMUST00000005371.5|Trp53|ENSMUSG00000059552.7|transformation related protein 53 	ENSMUST00000108658.3|Trp53|ENSMUSG00000059552.7|transformation related protein 53 	ENSMUST00000171247.1|Trp53|ENSMUSG00000059552.7|transformation related protein 53
mm10_v2_chr5_+_124541296_124541329	0.203411	Sox2	ENSMUST00000124529.1|Tmed2|ENSMUSG00000029390.7|transmembrane emp24 domain trafficking protein 2
mm10_v2_chr9_+_69397933_69397972	0.200438	Sox2	ENSMUST00000117610.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000145538.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000117246.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2
mm10_v2_chrX_-_94542037_94542143	0.199486	Sox2	ENSMUST00000026142.7|Maged1|ENSMUSG00000025151.10|melanoma antigen, family D, 1
mm10_v2_chr4_+_106911517_106911667	0.197575	Sox2	ENSMUST00000072753.6|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000097934.3|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr11_-_51606840_51606857	0.190438	Sox2	ENSMUST00000074669.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000101249.2|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000109103.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B
mm10_v2_chr11_-_58938851_58938923	0.18799	Sox2	ENSMUST00000094151.5|Rnf187|ENSMUSG00000020496.8|ring finger protein 187
mm10_v2_chr8_+_70697739_70697739	0.186329	Sox2	ENSMUST00000095267.4|Jund|ENSMUSG00000071076.5|Jun proto-oncogene related gene d
mm10_v2_chr5_-_137836210_137836268	0.185812	Sox2	ENSMUST00000110980.1|Pilra|ENSMUSG00000046245.7|paired immunoglobin-like type 2 receptor alpha 	ENSMUST00000058897.4|Pilra|ENSMUSG00000046245.7|paired immunoglobin-like type 2 receptor alpha
mm10_v2_chr1_-_36558214_36558266	0.185157	Sox2	ENSMUST00000154493.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr2_-_140671462_140671476	0.184071	Sox2	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr16_-_11066141_11066165	0.17591	Sox2	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr1_+_153900572_153900606	0.173936	Sox2	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr16_+_31663935_31664039	0.173414	Sox2	ENSMUST00000100001.3|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila) 	ENSMUST00000064477.7|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr15_+_98634743_98634778	0.173305	Sox2	ENSMUST00000003442.7|Cacnb3|ENSMUSG00000003352.7|calcium channel, voltage-dependent, beta 3 subunit
mm10_v2_chr4_-_114987220_114987256	0.172021	Sox2	ENSMUST00000030491.8|Cmpk1|ENSMUSG00000028719.8|cytidine monophosphate (UMP-CMP) kinase 1
mm10_v2_chr19_-_10240689_10240751	0.172006	Sox2	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr13_+_117220584_117220637	0.171738	Sox2	ENSMUST00000022242.7|Emb|ENSMUSG00000021728.7|embigin
mm10_v2_chr11_-_117040182_117040200	0.169014	Sox2	ENSMUST00000152401.1|Gm11728|ENSMUSG00000086902.1|predicted gene 11728 	ENSMUST00000150628.1|Gm11728|ENSMUSG00000086902.1|predicted gene 11728
mm10_v2_chr3_+_134236483_134236500	0.167337	Sox2	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr9_+_55209190_55209297	0.166718	Sox2	ENSMUST00000146201.1|Fbxo22|ENSMUSG00000032309.9|F-box protein 22
mm10_v2_chr11_-_116024489_116024511	0.163384	Sox2	ENSMUST00000016703.7|H3f3b|ENSMUSG00000016559.8|H3 histone, family 3B
mm10_v2_chr2_-_45110241_45110265	0.161491	Sox2	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr6_-_72958097_72958302	0.156057	Sox2	ENSMUST00000114049.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr2_+_119675062_119675095	0.155088	Sox2	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr9_-_60838200_60838200	0.15444	Sox2	ENSMUST00000063858.7|Gm9869|ENSMUSG00000052143.7|predicted gene 9869
mm10_v2_chr10_-_62486772_62486805	0.151458	Sox2	ENSMUST00000105447.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr11_+_87582201_87582215	0.1501	Sox2	ENSMUST00000133202.1|Sept4|ENSMUSG00000020486.12|septin 4
mm10_v2_chr9_+_21368014_21368027	0.149643	Sox2	ENSMUST00000067646.4|Ilf3|ENSMUSG00000032178.7|interleukin enhancer binding factor 3 	ENSMUST00000115414.1|Ilf3|ENSMUSG00000032178.7|interleukin enhancer binding factor 3
mm10_v2_chr16_-_38522662_38522683	0.149408	Sox2	ENSMUST00000002925.5|Timmdc1|ENSMUSG00000002846.9|translocase of inner mitochondrial membrane domain containing 1
mm10_v2_chr5_-_105139539_105139586	0.149207	Sox2	ENSMUST00000100961.4|Gbp9|ENSMUSG00000029298.9|guanylate-binding protein 9 	ENSMUST00000031235.6|Gbp8|ENSMUSG00000034438.10|guanylate-binding protein 8 	ENSMUST00000100962.3|Gbp4|ENSMUSG00000079363.3|guanylate binding protein 4
mm10_v2_chr13_-_58402103_58402149	0.14781	Sox2	ENSMUST00000176305.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176558.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176849.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K
mm10_v2_chr5_-_135934590_135934613	0.146683	Sox2	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr7_-_13009795_13009856	0.145872	Sox2	ENSMUST00000051390.7|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45 	ENSMUST00000172240.1|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45
mm10_v2_chr11_+_69580392_69580419	0.14573	Sox2	ENSMUST00000108657.3|Trp53|ENSMUSG00000059552.7|transformation related protein 53
mm10_v2_chr13_+_23575753_23575773	0.143744	Sox2	ENSMUST00000105105.1|Hist1h3d|ENSMUSG00000062808.4|histone cluster 1, H3d
mm10_v2_chr9_-_110117303_110117353	0.141565	Sox2	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr9_+_50768228_50768271	0.139982	Sox2	ENSMUST00000042391.6|Fdxacb1|ENSMUSG00000037845.8|ferredoxin-fold anticodon binding domain containing 1
mm10_v2_chr11_+_64979025_64979110	0.139091	Sox2	ENSMUST00000071891.5|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000108697.1|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000101049.2|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli)
mm10_v2_chr2_+_180042496_180042562	0.136249	Sox2	ENSMUST00000041126.8|Ss18l1|ENSMUSG00000039086.9|synovial sarcoma translocation gene on chromosome 18-like 1
mm10_v2_chr11_-_98022594_98022671	0.134106	Sox2	ENSMUST00000103144.3|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000017552.6|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000092736.4|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000107562.1|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit
mm10_v2_chr9_+_55150050_55150083	0.132724	Sox2	ENSMUST00000122441.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr11_+_59662471_59662543	0.131158	Sox2	ENSMUST00000072031.6|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000116371.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000108751.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000066330.8|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein
mm10_v2_chr1_-_93342734_93342803	0.129983	Sox2	ENSMUST00000027493.3|Pask|ENSMUSG00000026274.5|PAS domain containing serine/threonine kinase
mm10_v2_chr11_-_61175020_61175060	0.124229	Sox2	ENSMUST00000041683.8|Usp22|ENSMUSG00000042506.9|ubiquitin specific peptidase 22
mm10_v2_chr1_+_9601163_9601256	0.120267	Sox2	ENSMUST00000088666.3|3110035E14Rik|ENSMUSG00000067879.3|RIKEN cDNA 3110035E14 gene
mm10_v2_chr9_+_77917364_77917386	0.119694	Sox2	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr11_-_115699461_115699534	0.111654	Sox2	ENSMUST00000106497.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr18_+_3382979_3383065	0.110283	Sox2	ENSMUST00000025073.5|Cul2|ENSMUSG00000024231.8|cullin 2
mm10_v2_chr19_-_46962301_46962351	0.109283	Sox2	ENSMUST00000168536.1|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr18_+_56707725_56707940	0.109208	Sox2	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr9_-_44735189_44735213	0.107102	Sox2	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr5_-_34169409_34169466	0.106271	Sox2	ENSMUST00000060049.6|Haus3|ENSMUSG00000079555.1|HAUS augmin-like complex, subunit 3 	ENSMUST00000042954.7|Poln|ENSMUSG00000045102.8|DNA polymerase N
mm10_v2_chr7_-_143460989_143461050	0.103902	Sox2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr7_+_66109474_66109515	0.100699	Sox2	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr8_+_106415319_106415396	0.09869	Sox2	ENSMUST00000034382.7|Zfp90|ENSMUSG00000031907.8|zinc finger protein 90
mm10_v2_chr2_+_176831140_176831140	0.0959824	Sox2	ENSMUST00000122218.2|Gm14408|ENSMUSG00000078876.4|predicted gene 14408 	ENSMUST00000126726.1|Gm14408|ENSMUSG00000078876.4|predicted gene 14408
mm10_v2_chr2_-_175131864_175131864	0.0953424	Sox2	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr3_+_118562129_118562156	0.0945675	Sox2	ENSMUST00000039177.7|Dpyd|ENSMUSG00000033308.10|dihydropyrimidine dehydrogenase
mm10_v2_chr2_+_156721340_156721492	0.089993	Sox2	ENSMUST00000099145.5|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr19_+_5041337_5041416	0.0881989	Sox2	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chrX_-_133688978_133689005	0.0868641	Sox2	ENSMUST00000149154.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19 	ENSMUST00000167944.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19
mm10_v2_chr1_-_132390301_132390373	0.0868589	Sox2	ENSMUST00000132435.1|Tmcc2|ENSMUSG00000042066.9|transmembrane and coiled-coil domains 2
mm10_v2_chr10_-_79874565_79874634	0.0845914	Sox2	ENSMUST00000167250.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000092325.4|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chrX_+_73757069_73757111	0.0822539	Sox2	ENSMUST00000002079.6|Plxnb3|ENSMUSG00000031385.8|plexin B3
mm10_v2_chr12_+_17544873_17544951	0.0799451	Sox2	ENSMUST00000171737.1|Odc1|ENSMUSG00000011179.7|ornithine decarboxylase, structural 1
mm10_v2_chr6_-_82774448_82774463	0.0782207	Sox2	ENSMUST00000000642.4|Hk2|ENSMUSG00000000628.4|hexokinase 2
mm10_v2_chr12_+_69296676_69296798	0.0723179	Sox2	ENSMUST00000021362.4|Klhdc2|ENSMUSG00000020978.4|kelch domain containing 2
mm10_v2_chr5_-_86676346_86676369	0.070684	Sox2	ENSMUST00000038448.6|Tmprss11bnl|ENSMUSG00000035861.6|transmembrane protease, serine 11b N terminal like
mm10_v2_chr11_-_69900949_69901001	0.069998	Sox2	ENSMUST00000102580.3|2810408A11Rik|ENSMUSG00000018570.11|RIKEN cDNA 2810408A11 gene
mm10_v2_chr3_-_95228636_95228719	0.0653534	Sox2	ENSMUST00000065482.5|Mllt11|ENSMUSG00000053192.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm10_v2_chr6_+_86404219_86404240	0.0638609	Sox2	ENSMUST00000095754.3|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000095753.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr11_+_120348678_120348782	0.0638492	Sox2	ENSMUST00000143813.1|0610009L18Rik|ENSMUSG00000043644.4|RIKEN cDNA 0610009L18 gene
mm10_v2_chr7_-_109986445_109986480	0.0628312	Sox2	ENSMUST00000094097.5|Tmem41b|ENSMUSG00000047554.7|transmembrane protein 41B
mm10_v2_chr12_+_19490308_19490308	0.0592211	Sox2	ENSMUST00000167843.1|Gm6802|ENSMUSG00000059229.6|predicted gene 6802
mm10_v2_chr2_+_55437100_55437182	0.0547841	Sox2	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr2_+_90940397_90940543	0.0531211	Sox2	ENSMUST00000068726.6|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000005643.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000177642.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111451.3|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000068747.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr15_-_73423180_73423218	0.0403949	Sox2	ENSMUST00000110036.2|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2 	ENSMUST00000170939.1|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2
mm10_v2_chr2_-_125859139_125859221	0.0391362	Sox2	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr19_+_8898090_8898122	0.0381037	Sox2	ENSMUST00000096246.3|Ganab|ENSMUSG00000071650.5|alpha glucosidase 2 alpha neutral subunit
mm10_v2_chr11_+_6546899_6546941	0.0253478	Sox2	ENSMUST00000159007.1|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr2_+_122426432_122426477	0.02364	Sox2	ENSMUST00000110525.1|Slc28a2|ENSMUSG00000027219.7|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
mm10_v2_chr5_+_37245792_37245883	0.0198163	Sox2	ENSMUST00000031004.7|Crmp1|ENSMUSG00000029121.9|collapsin response mediator protein 1
mm10_v2_chr11_-_98400393_98400446	0.0176561	Sox2	ENSMUST00000128897.1|Pgap3|ENSMUSG00000038208.7|post-GPI attachment to proteins 3
mm10_v2_chr4_+_41135743_41135898	0.0170079	Sox2	ENSMUST00000040008.3|Ube2r2|ENSMUSG00000036241.3|ubiquitin-conjugating enzyme E2R 2
mm10_v2_chr10_-_57532489_57532530	0.0143681	Sox2	ENSMUST00000020027.4|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr15_-_98918131_98918231	0.0112963	Sox2	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr13_-_56895737_56895793	0.0106026	Sox2	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr3_-_95995662_95995692	0.0105035	Sox2	ENSMUST00000123006.1|Plekho1|ENSMUSG00000015745.3|pleckstrin homology domain containing, family O member 1
mm10_v2_chr3_-_58885212_58885354	0.00993034	Sox2	ENSMUST00000055636.6|Clrn1|ENSMUSG00000043850.9|clarin 1 	ENSMUST00000072551.6|Clrn1|ENSMUSG00000043850.9|clarin 1 	ENSMUST00000051408.7|Clrn1|ENSMUSG00000043850.9|clarin 1
mm10_v2_chr16_+_17070127_17070215	0.00925587	Sox2	ENSMUST00000115729.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr17_+_35001282_35001347	0.00890858	Sox2	ENSMUST00000174260.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr3_-_95315086_95315117	0.0035027	Sox2	ENSMUST00000098867.3|Gm10691|ENSMUSG00000074414.3|predicted gene 10691
mm10_v2_chr18_-_68300329_68300336	0.00232008	Sox2	ENSMUST00000042852.6|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
