NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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IRF2_STAT2_IRF8_IRF1 | 5.02 |
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PLAGL1 | 4.00 |
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PATZ1_KLF4 | 3.73 |
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RELA | 3.58 |
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IRF9 | 3.25 |
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ESRRA_ESR2 | 3.16 |
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IKZF1 | 3.09 |
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MXI1_MYC_MYCN | 3.07 |
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ZNF711_TFAP2A_TFAP2D | 2.91 |
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HIC2 | 2.83 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
Sample name | Condition | Replicate/Batch |
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SARS004-CoV2-1_S4 | ||
SARS004-CoV2-2_S5 | ||
SARS004-CoV2-3_S6 | ||
SARS004-mock-1_S1 | ||
SARS004-mock-2_S2 | ||
SARS004-mock-3_S3 |