• All motifs sorted by activity significance
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• All promoters sorted by FOV

• Activities table
• Activity deltas table
• Regulatory interactions
• Motifs sorted by significance (text)
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Motif ID: Hoxa3

Z-value: 0.540

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Top targets:

Promoter	Score	Refseq	Gene Symbol	Gene Name
chr3_+_55782500	5.596	ENSMUST00000075422.4	Mab21l1	mab-21-like 1 (C. elegans)
chr2_-_168767136	5.485	ENSMUST00000029061.5 ENSMUST00000103074.1	Sall4	sal-like 4 (Drosophila)
chr17_-_70853482	5.094	ENSMUST00000118283.1	Tgif1	TGFB-induced factor homeobox 1
chr9_+_119063429	4.354	ENSMUST00000141185.1 ENSMUST00000126251.1 ENSMUST00000136561.1	Vill	villin-like
chr2_-_168767029	4.105	ENSMUST00000075044.3	Sall4	sal-like 4 (Drosophila)
chr2_+_109917639	2.946	ENSMUST00000046548.7 ENSMUST00000111037.2	Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4
chr3_+_159839729	2.625	ENSMUST00000068952.5	Wls	wntless homolog (Drosophila)
chr13_-_102905740	2.606	ENSMUST00000167462.1	Mast4	microtubule associated serine/threonine kinase family member 4
chr13_-_102906046	2.457	ENSMUST00000171791.1	Mast4	microtubule associated serine/threonine kinase family member 4
chr3_-_86548268	2.424	ENSMUST00000077524.3	Mab21l2	mab-21-like 2 (C. elegans)
chr10_+_37139558	1.646	ENSMUST00000062667.3	5930403N24Rik	RIKEN cDNA 5930403N24 gene
chr12_+_59013379	1.244	ENSMUST00000021379.7	Gemin2	gem (nuclear organelle) associated protein 2
chr10_-_37138863	1.198	ENSMUST00000092584.5	Marcks	myristoylated alanine rich protein kinase C substrate
chr17_+_17402672	1.106	ENSMUST00000115576.2	Lix1	limb expression 1 homolog (chicken)
chr5_+_138187485	0.943	ENSMUST00000110934.2	Cnpy4	canopy 4 homolog (zebrafish)
chr5_-_138187177	0.847	ENSMUST00000110937.1 ENSMUST00000139276.1 ENSMUST00000048698.7 ENSMUST00000123415.1	Taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr10_+_26772477	0.818	ENSMUST00000039557.7	Arhgap18	Rho GTPase activating protein 18
chr1_-_172027269	0.807	ENSMUST00000027837.6 ENSMUST00000111264.1	Vangl2	vang-like 2 (van gogh, Drosophila)
chr14_+_79515618	0.618	ENSMUST00000110835.1	Elf1	E74-like factor 1
chr7_-_38019505	0.611	ENSMUST00000085513.4	Uri1	URI1, prefoldin-like chaperone
chr2_+_36230426	0.343	ENSMUST00000062069.5	Ptgs1	prostaglandin-endoperoxide synthase 1
chr14_+_64589802	0.322	ENSMUST00000180610.1	A930011O12Rik	RIKEN cDNA A930011O12 gene
chr2_-_69712461	0.295	ENSMUST00000102706.3 ENSMUST00000073152.6	Fastkd1	FAST kinase domains 1
chr7_-_116038734	0.243	ENSMUST00000166877.1	Sox6	SRY-box containing gene 6
chr5_-_137531952	0.136	ENSMUST00000140139.1	Gnb2	guanine nucleotide binding protein (G protein), beta 2
chr1_-_172027251	0.119	ENSMUST00000138714.1	Vangl2	vang-like 2 (van gogh, Drosophila)
chr11_+_95384662	0.050	ENSMUST00000021243.7 ENSMUST00000146556.1	Slc35b1	solute carrier family 35, member B1
chr5_-_137531204	0.037	ENSMUST00000150063.2	Gnb2	guanine nucleotide binding protein (G protein), beta 2
chr17_+_45734506	0.014	ENSMUST00000180558.1	F630040K05Rik	RIKEN cDNA F630040K05 gene

Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.0	2.9	GO:0072204	cell-cell signaling involved in kidney development(GO:0060995) Wnt signaling pathway involved in kidney development(GO:0061289) canonical Wnt signaling pathway involved in metanephric kidney development(GO:0061290) cell-cell signaling involved in metanephros development(GO:0072204)
0.5	9.6	GO:0001833	inner cell mass cell proliferation(GO:0001833)
0.3	5.1	GO:0048387	negative regulation of retinoic acid receptor signaling pathway(GO:0048387)
0.3	0.9	GO:0060489	establishment of body hair or bristle planar orientation(GO:0048104) establishment of body hair planar orientation(GO:0048105) orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis(GO:0060488) planar dichotomous subdivision of terminal units involved in lung branching morphogenesis(GO:0060489) lateral sprouting involved in lung morphogenesis(GO:0060490)
0.2	2.6	GO:0031017	exocrine pancreas development(GO:0031017)
0.1	0.3	GO:0035633	maintenance of blood-brain barrier(GO:0035633)
0.1	2.4	GO:0010172	embryonic body morphogenesis(GO:0010172)
0.1	4.4	GO:0051693	actin filament capping(GO:0051693)
0.0	1.1	GO:0097352	autophagosome maturation(GO:0097352)
0.0	0.6	GO:0050860	negative regulation of T cell receptor signaling pathway(GO:0050860)
0.0	1.2	GO:0000387	spliceosomal snRNP assembly(GO:0000387)
0.0	0.2	GO:2000741	positive regulation of mesenchymal stem cell differentiation(GO:2000741)
0.0	0.1	GO:0072531	pyrimidine-containing compound transmembrane transport(GO:0072531)
0.0	5.4	GO:0043010	camera-type eye development(GO:0043010)
0.0	0.8	GO:0006367	transcription initiation from RNA polymerase II promoter(GO:0006367)

Gene overrepresentation in cellular_component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	1.2	GO:0042585	germinal vesicle(GO:0042585)
0.2	0.9	GO:0060187	cell pole(GO:0060187)
0.1	1.2	GO:0032797	SMN complex(GO:0032797)
0.1	2.6	GO:0032839	dendrite cytoplasm(GO:0032839)
0.1	9.6	GO:0000792	heterochromatin(GO:0000792)
0.0	0.8	GO:0033276	transcription factor TFTC complex(GO:0033276)
0.0	0.6	GO:0005665	DNA-directed RNA polymerase II, core complex(GO:0005665)

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	2.6	GO:0031852	mu-type opioid receptor binding(GO:0031852)
0.2	2.9	GO:0016500	protein-hormone receptor activity(GO:0016500)
0.2	5.1	GO:0070410	co-SMAD binding(GO:0070410)
0.0	5.1	GO:0000287	magnesium ion binding(GO:0000287)
0.0	0.6	GO:0001106	RNA polymerase II transcription corepressor activity(GO:0001106)
0.0	1.2	GO:0005080	protein kinase C binding(GO:0005080)
0.0	0.1	GO:0005459	UDP-galactose transmembrane transporter activity(GO:0005459)
0.0	10.5	GO:0044212	transcription regulatory region DNA binding(GO:0044212)

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