Motif ID: Rara

Z-value: 0.698


Transcription factors associated with Rara:

Gene SymbolEntrez IDGene Name
Rara ENSMUSG00000037992.10 Rara

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Raramm10_v2_chr11_+_98927785_989278180.453.6e-04Click!


Activity profile for motif Rara.

activity profile for motif Rara


Sorted Z-values histogram for motif Rara

Sorted Z-values for motif Rara



Network of associatons between targets according to the STRING database.



First level regulatory network of Rara

PNG image of the network

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Top targets:


Showing 1 to 20 of 70 entries
PromoterScoreRefseqGene SymbolGene Name
chr13_+_94875600 8.362 ENSMUST00000022195.10
 Otp
orthopedia homolog (Drosophila)
chr4_-_141599835 4.283 ENSMUST00000141518.1
ENSMUST00000127455.1
ENSMUST00000105784.1
ENSMUST00000147785.1
 Fblim1



filamin binding LIM protein 1



chr6_+_30723541 3.748 ENSMUST00000115127.1
 Mest
mesoderm specific transcript
chr17_+_34593388 3.408 ENSMUST00000174532.1
 Pbx2
pre B cell leukemia homeobox 2
chr11_+_98960412 3.191 ENSMUST00000107473.2
 Rara
retinoic acid receptor, alpha
chr14_-_16575456 2.369 ENSMUST00000063750.6
 Rarb
retinoic acid receptor, beta
chr4_+_150853919 2.250 ENSMUST00000073600.2
 Errfi1
ERBB receptor feedback inhibitor 1
chr12_-_108893197 1.812 ENSMUST00000161154.1
ENSMUST00000161410.1
 Wars

tryptophanyl-tRNA synthetase

chr10_+_4611971 1.757 ENSMUST00000105590.1
ENSMUST00000067086.7
 Esr1

estrogen receptor 1 (alpha)

chr1_-_175692624 1.573 ENSMUST00000027809.7
 Opn3
opsin 3
chr12_+_87026564 1.571 ENSMUST00000110187.1
ENSMUST00000156162.1
 Tmem63c

transmembrane protein 63c

chr11_+_94629741 1.546 ENSMUST00000021239.6
 Lrrc59
leucine rich repeat containing 59
chr4_-_128609981 1.450 ENSMUST00000141040.1
ENSMUST00000147876.1
ENSMUST00000097877.2
 Zscan20


zinc finger and SCAN domains 20


chr3_-_36475688 1.419 ENSMUST00000029266.8
 Anxa5
annexin A5
chr14_+_55618023 1.406 ENSMUST00000002395.7
 Rec8
REC8 homolog (yeast)
chr11_-_5915124 1.383 ENSMUST00000109823.2
ENSMUST00000109822.1
 Gck

glucokinase

chr4_+_48045144 1.223 ENSMUST00000030025.3
 Nr4a3
nuclear receptor subfamily 4, group A, member 3
chr2_+_26319741 1.218 ENSMUST00000066889.6
 Gpsm1
G-protein signalling modulator 1 (AGS3-like, C. elegans)
chr1_+_134037490 1.167 ENSMUST00000162779.1
 Fmod
fibromodulin
chr6_+_91157373 1.149 ENSMUST00000155007.1
 Hdac11
histone deacetylase 11

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Showing 1 to 20 of 42 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.6 8.3 GO:0021979 hypothalamus cell differentiation(GO:0021979)
0.3 4.3 GO:0033623 regulation of integrin activation(GO:0033623)
0.1 3.7 GO:0010883 regulation of lipid storage(GO:0010883)
0.1 3.4 GO:0009954 proximal/distal pattern formation(GO:0009954)
1.1 3.2 GO:0060010 Sertoli cell fate commitment(GO:0060010)
0.5 2.4 GO:0003406 retinal pigment epithelium development(GO:0003406)
0.7 2.2 GO:0042536 negative regulation of tumor necrosis factor biosynthetic process(GO:0042536)
0.6 1.8 GO:0006436 tryptophanyl-tRNA aminoacylation(GO:0006436)
0.4 1.8 GO:0060745 mammary gland branching involved in pregnancy(GO:0060745)
0.1 1.8 GO:0009191 ribonucleoside diphosphate catabolic process(GO:0009191)
0.6 1.7 GO:0021933 radial glia guided migration of cerebellar granule cell(GO:0021933)
0.5 1.6 GO:0018298 protein-chromophore linkage(GO:0018298)
0.5 1.4 GO:0034287 detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594)
0.4 1.4 GO:0097211 response to gonadotropin-releasing hormone(GO:0097210) cellular response to gonadotropin-releasing hormone(GO:0097211)
0.1 1.4 GO:0007141 male meiosis I(GO:0007141)
0.4 1.2 GO:0038095 positive regulation of mast cell cytokine production(GO:0032765) Fc-epsilon receptor signaling pathway(GO:0038095)
0.0 1.2 GO:0030199 collagen fibril organization(GO:0030199)
0.0 1.2 GO:0008277 regulation of G-protein coupled receptor protein signaling pathway(GO:0008277)
0.1 1.1 GO:0060484 lung-associated mesenchyme development(GO:0060484)
0.0 1.1 GO:0014003 oligodendrocyte development(GO:0014003)

Gene overrepresentation in cellular_component category:

Showing 1 to 20 of 22 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.0 4.6 GO:0005667 transcription factor complex(GO:0005667)
0.0 3.3 GO:0001725 stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517)
0.0 3.2 GO:0000790 nuclear chromatin(GO:0000790)
0.0 2.2 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)
0.1 1.8 GO:0035327 transcriptionally active chromatin(GO:0035327)
0.0 1.5 GO:0042645 nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645)
0.3 1.4 GO:0000798 nuclear cohesin complex(GO:0000798) nuclear meiotic cohesin complex(GO:0034991)
0.1 1.4 GO:0045180 basal cortex(GO:0045180)
0.0 1.3 GO:0014704 intercalated disc(GO:0014704)
0.0 1.1 GO:0005604 basement membrane(GO:0005604)
0.0 1.1 GO:0000118 histone deacetylase complex(GO:0000118)
0.1 1.0 GO:0005652 nuclear lamina(GO:0005652)
0.0 1.0 GO:0030131 clathrin adaptor complex(GO:0030131)
0.1 0.9 GO:0005750 mitochondrial respiratory chain complex III(GO:0005750)
0.0 0.8 GO:0005801 cis-Golgi network(GO:0005801)
0.1 0.7 GO:0001739 sex chromatin(GO:0001739)
0.1 0.6 GO:0000813 ESCRT I complex(GO:0000813)
0.2 0.5 GO:0031417 NatC complex(GO:0031417)
0.0 0.2 GO:0002193 MAML1-RBP-Jkappa- ICN1 complex(GO:0002193)
0.0 0.2 GO:0031298 replication fork protection complex(GO:0031298)

Gene overrepresentation in molecular_function category:

Showing 1 to 20 of 38 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.0 14.8 GO:0043565 sequence-specific DNA binding(GO:0043565)
0.3 4.3 GO:0031005 filamin binding(GO:0031005)
0.1 3.7 GO:0052771 coenzyme F390-A hydrolase activity(GO:0052770) coenzyme F390-G hydrolase activity(GO:0052771)
0.4 3.2 GO:0001972 retinoic acid binding(GO:0001972)
0.1 2.4 GO:0003708 retinoic acid receptor activity(GO:0003708)
0.0 2.2 GO:0017124 SH3 domain binding(GO:0017124)
0.6 1.8 GO:0004830 tryptophan-tRNA ligase activity(GO:0004830)
0.6 1.8 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.2 1.8 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.5 1.6 GO:0009881 photoreceptor activity(GO:0009881)
0.1 1.6 GO:0005227 calcium activated cation channel activity(GO:0005227)
0.2 1.4 GO:0004340 glucokinase activity(GO:0004340) hexokinase activity(GO:0004396)
0.1 1.4 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.1 1.2 GO:0001223 transcription coactivator binding(GO:0001223)
0.1 1.2 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.0 1.2 GO:0008201 heparin binding(GO:0008201)
0.0 1.1 GO:0031078 histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041)
0.0 1.1 GO:0005104 fibroblast growth factor receptor binding(GO:0005104)
0.1 1.0 GO:0047499 calcium-independent phospholipase A2 activity(GO:0047499)
0.0 1.0 GO:0030215 semaphorin receptor binding(GO:0030215)