mm10_v2_chrX_-_61185558_61185558	17.3261	Aire	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chr12_-_78983476_78983493	3.27304	Aire	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr13_-_110280103_110280213	3.0697	Aire	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr8_+_69808672_69808742	2.85386	Aire	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr10_+_123264076_123264125	2.79688	Aire	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr3_-_116968969_116969004	2.59343	Aire	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr7_-_127895578_127895647	2.21275	Aire	ENSMUST00000033074.6|Vkorc1|ENSMUSG00000096145.1|vitamin K epoxide reductase complex, subunit 1
mm10_v2_chr9_+_64235201_64235201	2.13697	Aire	ENSMUST00000039011.3|Uchl4|ENSMUSG00000035337.3|ubiquitin carboxyl-terminal esterase L4
mm10_v2_chr18_+_37400845_37400886	2.06655	Aire	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr18_+_37725706_37725754	2.0578	Aire	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr2_+_55435918_55435970	1.99473	Aire	ENSMUST00000067101.3|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr14_+_76476913_76476930	1.99157	Aire	ENSMUST00000140251.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr19_-_28963863_28963908	1.87006	Aire	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr5_-_84417359_84417389	1.86632	Aire	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr9_-_53610329_53610382	1.79889	Aire	ENSMUST00000034547.5|Acat1|ENSMUSG00000032047.5|acetyl-Coenzyme A acetyltransferase 1
mm10_v2_chr19_+_34217588_34217624	1.72902	Aire	ENSMUST00000119603.1|Stambpl1|ENSMUSG00000024776.11|STAM binding protein like 1
mm10_v2_chr10_+_52358767_52358767	1.47025	Aire	ENSMUST00000180473.1|Gm26741|ENSMUSG00000097704.1|predicted gene, 26741
mm10_v2_chr10_+_86021961_86021991	1.45648	Aire	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr2_-_134644079_134644109	1.42411	Aire	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr7_+_60155538_60155538	1.34429	Aire	ENSMUST00000057611.4|Gm7367|ENSMUSG00000047370.4|predicted pseudogene 7367
mm10_v2_chr12_+_84052114_84052145	1.31563	Aire	ENSMUST00000120927.1|Acot3|ENSMUSG00000021228.8|acyl-CoA thioesterase 3
mm10_v2_chr8_+_64947177_64947255	1.29488	Aire	ENSMUST00000079896.7|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192 	ENSMUST00000026595.5|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192
mm10_v2_chr13_+_53525703_53525703	1.23233	Aire	ENSMUST00000081132.4|Gm5449|ENSMUSG00000063166.4|predicted pseudogene 5449
mm10_v2_chr4_-_46566432_46566471	0.94428	Aire	ENSMUST00000030021.7|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A 	ENSMUST00000107757.1|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A
mm10_v2_chr11_-_115627948_115628122	0.922215	Aire	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr10_-_81014902_81014945	0.906272	Aire	ENSMUST00000126317.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000092285.3|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000117805.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr2_+_25218741_25218750	0.860673	Aire	ENSMUST00000028346.3|Fam166a|ENSMUSG00000026969.3|family with sequence similarity 166, member A
mm10_v2_chr7_+_45896941_45897101	0.855012	Aire	ENSMUST00000069772.7|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143 	ENSMUST00000107716.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr17_+_35236556_35236607	0.773532	Aire	ENSMUST00000068261.8|Atp6v1g2|ENSMUSG00000024403.10|ATPase, H+ transporting, lysosomal V1 subunit G2
mm10_v2_chr11_-_69695802_69695872	0.759577	Aire	ENSMUST00000108649.1|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441 	ENSMUST00000174159.1|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441 	ENSMUST00000181810.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chr5_+_130369420_130369476	0.751858	Aire	ENSMUST00000086029.3|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr14_-_18894255_18894282	0.747437	Aire	ENSMUST00000124353.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chrM_+_7759_7927	0.728937	Aire	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr16_-_91618986_91619026	0.699345	Aire	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr12_-_36156781_36156825	0.679758	Aire	ENSMUST00000020856.4|Bzw2|ENSMUSG00000020547.4|basic leucine zipper and W2 domains 2
mm10_v2_chr5_+_140735526_140735567	0.677157	Aire	ENSMUST00000120630.2|Amz1|ENSMUSG00000050022.10|archaelysin family metallopeptidase 1
mm10_v2_chr1_-_171059390_171059405	0.66658	Aire	ENSMUST00000164044.1|Fcgr3|ENSMUSG00000059498.7|Fc receptor, IgG, low affinity III 	ENSMUST00000169017.1|Fcgr3|ENSMUSG00000059498.7|Fc receptor, IgG, low affinity III
mm10_v2_chr16_+_36875119_36875205	0.659312	Aire	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chr8_-_31739763_31739763	0.651031	Aire	ENSMUST00000178878.1|Gm5117|ENSMUSG00000093862.1|predicted gene 5117
mm10_v2_chr12_+_36157124_36157238	0.610663	Aire	ENSMUST00000041640.3|Ankmy2|ENSMUSG00000036188.3|ankyrin repeat and MYND domain containing 2
mm10_v2_chr7_+_45897429_45897534	0.577838	Aire	ENSMUST00000140243.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr9_+_109054839_109054871	0.558748	Aire	ENSMUST00000154184.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr19_-_6118491_6118586	0.557694	Aire	ENSMUST00000113533.1|Sac3d1|ENSMUSG00000024790.7|SAC3 domain containing 1
mm10_v2_chr3_+_89715016_89715084	0.536501	Aire	ENSMUST00000098924.2|Adar|ENSMUSG00000027951.10|adenosine deaminase, RNA-specific
mm10_v2_chr7_-_141434532_141434605	0.521871	Aire	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr12_+_10390756_10390836	0.505247	Aire	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr3_-_89411781_89411894	0.492999	Aire	ENSMUST00000107429.3|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000129308.2|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000107426.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000050398.4|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000162701.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm10_v2_chr7_-_19665005_19665030	0.489484	Aire	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr9_-_97111117_97111159	0.452867	Aire	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr6_+_126939957_126939988	0.434614	Aire	ENSMUST00000032497.3|D6Wsu163e|ENSMUSG00000030347.3|DNA segment, Chr 6, Wayne State University 163, expressed
mm10_v2_chr13_-_62371936_62371936	0.415616	Aire	ENSMUST00000107989.3|Gm3604|ENSMUSG00000094942.1|predicted gene 3604
mm10_v2_chrM_+_8600_8616	0.401106	Aire	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr12_+_69296676_69296798	0.394481	Aire	ENSMUST00000021362.4|Klhdc2|ENSMUSG00000020978.4|kelch domain containing 2
mm10_v2_chr2_+_164948219_164948245	0.374798	Aire	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr5_+_121660528_121660631	0.370259	Aire	ENSMUST00000031414.8|Brap|ENSMUSG00000029458.8|BRCA1 associated protein
mm10_v2_chr1_-_65186456_65186504	0.362235	Aire	ENSMUST00000169032.1|Idh1|ENSMUSG00000025950.10|isocitrate dehydrogenase 1 (NADP+), soluble
mm10_v2_chr15_+_101266839_101266859	0.344362	Aire	ENSMUST00000023779.6|Nr4a1|ENSMUSG00000023034.6|nuclear receptor subfamily 4, group A, member 1
mm10_v2_chr9_-_113708209_113708259	0.322307	Aire	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr2_-_134644125_134644145	0.305418	Aire	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr1_-_90843916_90843983	0.285087	Aire	ENSMUST00000130846.2|Col6a3|ENSMUSG00000048126.10|collagen, type VI, alpha 3 	ENSMUST00000097653.4|Col6a3|ENSMUSG00000048126.10|collagen, type VI, alpha 3 	ENSMUST00000056925.9|Col6a3|ENSMUSG00000048126.10|collagen, type VI, alpha 3
mm10_v2_chrM_+_14138_14154	0.282588	Aire	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm10_v2_chr5_+_24100578_24100669	0.279444	Aire	ENSMUST00000030841.5|Klhl7|ENSMUSG00000028986.6|kelch-like 7 	ENSMUST00000163409.1|Klhl7|ENSMUSG00000028986.6|kelch-like 7
mm10_v2_chr15_+_10981747_10981765	0.267476	Aire	ENSMUST00000070877.5|Amacr|ENSMUSG00000022244.6|alpha-methylacyl-CoA racemase
mm10_v2_chr2_-_121473993_121474067	0.240587	Aire	ENSMUST00000056732.3|Mfap1b|ENSMUSG00000048222.3|microfibrillar-associated protein 1B
mm10_v2_chr10_+_53337686_53337724	0.23417	Aire	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr14_-_57571551_57571588	0.23093	Aire	ENSMUST00000022518.5|N6amt2|ENSMUSG00000021951.5|N-6 adenine-specific DNA methyltransferase 2 (putative)
mm10_v2_chr5_-_100373484_100373527	0.221611	Aire	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr17_+_22689771_22689771	0.202486	Aire	ENSMUST00000055305.8|Gm9805|ENSMUSG00000046088.8|predicted gene 9805
mm10_v2_chr5_-_113310697_113310727	0.2002	Aire	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr5_-_105343929_105343929	0.195839	Aire	ENSMUST00000183149.1|Gbp11|ENSMUSG00000098049.1|guanylate binding protein 11
mm10_v2_chr2_-_6951680_6951680	0.1955	Aire	ENSMUST00000076071.2|Gm10115|ENSMUSG00000062319.2|predicted gene 10115
mm10_v2_chr18_+_36793918_36793937	0.183777	Aire	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr19_+_3323301_3323339	0.148536	Aire	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr11_-_69696058_69696102	0.113617	Aire	ENSMUST00000180587.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12 	ENSMUST00000094070.4|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441
mm10_v2_chr1_+_44119952_44119985	0.109178	Aire	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr2_-_165400398_165400410	0.107024	Aire	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr1_-_5070281_5070288	0.101805	Aire	ENSMUST00000147158.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20 	ENSMUST00000118000.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20
mm10_v2_chr11_-_67052563_67052618	0.0997025	Aire	ENSMUST00000116363.1|Adprm|ENSMUSG00000020910.10|ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
mm10_v2_chr8_-_4216912_4217003	0.0984436	Aire	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr7_-_126922887_126922926	0.0907683	Aire	ENSMUST00000134134.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000119781.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000121612.2|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219
mm10_v2_chr3_-_62506970_62507027	0.07639	Aire	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr6_-_91515878_91515889	0.0651673	Aire	ENSMUST00000032182.3|Xpc|ENSMUSG00000030094.7|xeroderma pigmentosum, complementation group C
mm10_v2_chr8_+_111643425_111643450	0.0505383	Aire	ENSMUST00000077791.6|Zfp1|ENSMUSG00000055835.9|zinc finger protein 1
mm10_v2_chr8_-_4217133_4217168	0.0364306	Aire	ENSMUST00000175906.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr7_-_14562171_14562171	0.0325937	Aire	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr7_-_121981669_121981711	0.0304962	Aire	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr1_+_86021935_86021953	0.025886	Aire	ENSMUST00000052854.6|Spata3|ENSMUSG00000026226.9|spermatogenesis associated 3 	ENSMUST00000125083.1|Spata3|ENSMUSG00000026226.9|spermatogenesis associated 3 	ENSMUST00000152501.1|Spata3|ENSMUSG00000026226.9|spermatogenesis associated 3 	ENSMUST00000113344.1|Spata3|ENSMUSG00000026226.9|spermatogenesis associated 3 	ENSMUST00000130504.1|Spata3|ENSMUSG00000026226.9|spermatogenesis associated 3 	ENSMUST00000153247.2|Spata3|ENSMUSG00000026226.9|spermatogenesis associated 3
mm10_v2_chr2_+_175283298_175283298	0.0153547	Aire	ENSMUST00000098998.3|Gm14440|ENSMUSG00000078901.2|predicted gene 14440
mm10_v2_chr2_-_94010807_94010823	0.00721192	Aire	ENSMUST00000111240.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
