mm10_v2_chr6_-_23248264_23248390	6.58951	Brca1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr19_+_55741810_55741842	2.29881	Brca1	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr11_+_44617310_44617336	2.21599	Brca1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr7_-_144939823_144939869	2.14854	Brca1	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr2_-_28916668_28916668	1.60926	Brca1	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr1_-_75278345_75278440	1.58988	Brca1	ENSMUST00000039534.4|Resp18|ENSMUSG00000033061.9|regulated endocrine-specific protein 18
mm10_v2_chr17_-_70853482_70853546	1.46024	Brca1	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr11_-_11890368_11890379	1.45472	Brca1	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr10_-_42583628_42583639	1.27573	Brca1	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr19_-_24225015_24225033	1.25262	Brca1	ENSMUST00000099558.4|Tjp2|ENSMUSG00000024812.9|tight junction protein 2
mm10_v2_chr2_-_105399286_105399319	1.20305	Brca1	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chr3_+_87906321_87906356	1.17229	Brca1	ENSMUST00000005017.8|Hdgf|ENSMUSG00000004897.10|hepatoma-derived growth factor
mm10_v2_chr2_-_9883993_9883993	1.15167	Brca1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr12_-_10900296_10900318	1.02587	Brca1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr18_-_47333311_47333373	0.989226	Brca1	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr11_-_106998483_106998491	0.979276	Brca1	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr13_-_95891905_95891929	0.966259	Brca1	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr11_+_59306920_59306935	0.947712	Brca1	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr5_-_21701332_21701404	0.907364	Brca1	ENSMUST00000115217.1|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D 	ENSMUST00000060899.8|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D
mm10_v2_chrX_+_71663665_71663671	0.903345	Brca1	ENSMUST00000070449.5|Gpr50|ENSMUSG00000056380.7|G-protein-coupled receptor 50
mm10_v2_chr3_+_5218546_5218561	0.891007	Brca1	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr3_+_5218516_5218544	0.885589	Brca1	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr7_-_102100227_102100258	0.884845	Brca1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr13_-_98891036_98891063	0.85258	Brca1	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr16_+_30065333_30065351	0.776335	Brca1	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr3_+_5218589_5218614	0.771148	Brca1	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr12_-_69159109_69159186	0.731642	Brca1	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr12_+_52097737_52097775	0.715106	Brca1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr9_-_37657189_37657312	0.708323	Brca1	ENSMUST00000117654.1|Tbrg1|ENSMUSG00000011114.11|transforming growth factor beta regulated gene 1
mm10_v2_chr11_-_98625661_98625661	0.707895	Brca1	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr19_-_10203880_10204169	0.707314	Brca1	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chr6_+_14901344_14901364	0.686839	Brca1	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr13_+_24943144_24943164	0.677514	Brca1	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr13_-_98890974_98891035	0.672491	Brca1	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr5_+_138187485_138187521	0.669635	Brca1	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr1_+_74791516_74791516	0.64007	Brca1	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr13_-_100775844_100775899	0.639463	Brca1	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chrX_+_169685191_169685250	0.632319	Brca1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr9_-_109082372_109082414	0.617525	Brca1	ENSMUST00000167504.1|Tma7|ENSMUSG00000091537.1|translational machinery associated 7 homolog (S. cerevisiae)
mm10_v2_chr6_-_120357342_120357400	0.593371	Brca1	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr5_+_146832890_146832947	0.586424	Brca1	ENSMUST00000035983.5|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr3_+_109573907_109573990	0.584794	Brca1	ENSMUST00000106576.2|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr3_-_138131356_138131381	0.571586	Brca1	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr17_-_6655939_6655939	0.564617	Brca1	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chrX_+_150594420_150594478	0.564509	Brca1	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr5_-_138187177_138187237	0.557929	Brca1	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr8_-_47990535_47990577	0.545192	Brca1	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr5_+_146833106_146833210	0.532344	Brca1	ENSMUST00000075453.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21 	ENSMUST00000099272.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr19_-_32466575_32466575	0.531799	Brca1	ENSMUST00000078034.3|Rpl9-ps6|ENSMUSG00000062456.3|ribosomal protein L9, pseudogene 6
mm10_v2_chr7_-_44375006_44375035	0.523304	Brca1	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr13_-_107890059_107890073	0.520314	Brca1	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr18_+_7869707_7869737	0.518129	Brca1	ENSMUST00000166062.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000169010.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr10_-_33624587_33624769	0.517486	Brca1	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chrX_-_101222426_101222563	0.512999	Brca1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr6_-_120357440_120357489	0.511541	Brca1	ENSMUST00000112703.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr14_-_67715585_67715681	0.508593	Brca1	ENSMUST00000163100.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000132705.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000124045.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2
mm10_v2_chr1_-_46854046_46854079	0.507776	Brca1	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr3_-_100489324_100489354	0.497787	Brca1	ENSMUST00000061455.8|Fam46c|ENSMUSG00000044468.8|family with sequence similarity 46, member C
mm10_v2_chr13_+_100651328_100651397	0.497674	Brca1	ENSMUST00000022135.8|Taf9|ENSMUSG00000078941.3|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000084721.6|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr5_-_135064063_135064116	0.492525	Brca1	ENSMUST00000111205.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22 	ENSMUST00000141309.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22
mm10_v2_chr17_-_34028044_34028076	0.488901	Brca1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chr15_-_97020322_97020336	0.483778	Brca1	ENSMUST00000166223.1|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr17_-_33685386_33685410	0.47769	Brca1	ENSMUST00000139302.1|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000087582.5|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000114385.2|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M
mm10_v2_chr6_-_120357422_120357435	0.477245	Brca1	ENSMUST00000032283.5|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr17_-_28350747_28350820	0.471474	Brca1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr19_+_36083696_36083736	0.470561	Brca1	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr7_+_51878967_51879000	0.461264	Brca1	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chrX_+_150589907_150589996	0.457658	Brca1	ENSMUST00000080884.4|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr7_-_133122615_133122762	0.452509	Brca1	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr19_+_44562841_44562879	0.442441	Brca1	ENSMUST00000040455.4|Hif1an|ENSMUSG00000036450.4|hypoxia-inducible factor 1, alpha subunit inhibitor
mm10_v2_chr3_+_87930256_87930350	0.441807	Brca1	ENSMUST00000055984.6|Isg20l2|ENSMUSG00000048039.8|interferon stimulated exonuclease gene 20-like 2
mm10_v2_chr7_+_101896817_101896961	0.432203	Brca1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr4_-_41464816_41464892	0.4296	Brca1	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr4_-_116708312_116708406	0.423402	Brca1	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr7_-_102099932_102099943	0.422048	Brca1	ENSMUST00000106934.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr8_-_11008458_11008458	0.417469	Brca1	ENSMUST00000040514.6|Irs2|ENSMUSG00000038894.6|insulin receptor substrate 2
mm10_v2_chr6_-_125191535_125191620	0.410893	Brca1	ENSMUST00000043848.4|Ncapd2|ENSMUSG00000038252.7|non-SMC condensin I complex, subunit D2
mm10_v2_chr15_+_102460076_102460108	0.407277	Brca1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr17_+_71204647_71204693	0.405113	Brca1	ENSMUST00000126681.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr6_+_116264186_116264225	0.402405	Brca1	ENSMUST00000036503.7|Zfand4|ENSMUSG00000042213.10|zinc finger, AN1-type domain 4 	ENSMUST00000112900.3|Zfand4|ENSMUSG00000042213.10|zinc finger, AN1-type domain 4
mm10_v2_chr10_-_128923439_128923545	0.400808	Brca1	ENSMUST00000153731.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1 	ENSMUST00000026405.3|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr17_+_6430112_6430204	0.394894	Brca1	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr6_-_122340499_122340510	0.373455	Brca1	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr10_-_13388830_13388970	0.370178	Brca1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr17_-_28350600_28350681	0.363454	Brca1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr4_-_131838231_131838291	0.361194	Brca1	ENSMUST00000030741.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U 	ENSMUST00000105987.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U
mm10_v2_chr2_-_25224653_25224702	0.360754	Brca1	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chr5_-_115158169_115158180	0.354093	Brca1	ENSMUST00000053271.5|Mlec|ENSMUSG00000048578.7|malectin 	ENSMUST00000112121.1|Mlec|ENSMUSG00000048578.7|malectin
mm10_v2_chr11_-_101171302_101171353	0.353055	Brca1	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr7_-_17027853_17027921	0.341051	Brca1	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr18_-_15063560_15063617	0.335971	Brca1	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr10_-_128923948_128924035	0.333406	Brca1	ENSMUST00000131271.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr10_-_13388753_13388774	0.333116	Brca1	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr7_-_64872993_64873037	0.322471	Brca1	ENSMUST00000094331.2|Ndnl2|ENSMUSG00000070520.2|necdin-like 2
mm10_v2_chr17_+_35841668_35841683	0.321609	Brca1	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr19_-_12765447_12765632	0.318873	Brca1	ENSMUST00000112933.1|Cntf|ENSMUSG00000079415.2|ciliary neurotrophic factor
mm10_v2_chr8_+_25017211_25017305	0.318264	Brca1	ENSMUST00000033961.5|Tm2d2|ENSMUSG00000031556.5|TM2 domain containing 2
mm10_v2_chr17_+_35841491_35841515	0.314096	Brca1	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr5_+_136953246_136953406	0.312953	Brca1	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chr14_-_52305056_52305130	0.303361	Brca1	ENSMUST00000174853.1|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3 	ENSMUST00000022767.9|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3
mm10_v2_chr2_-_58052832_58052870	0.29856	Brca1	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr19_+_6047081_6047104	0.289864	Brca1	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr11_+_6291660_6291687	0.286085	Brca1	ENSMUST00000101554.2|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENSMUST00000093350.3|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr3_-_95882031_95882074	0.285861	Brca1	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr16_+_22009471_22009543	0.273789	Brca1	ENSMUST00000023561.7|Senp2|ENSMUSG00000022855.8|SUMO/sentrin specific peptidase 2
mm10_v2_chr11_+_6291607_6291655	0.267059	Brca1	ENSMUST00000003461.8|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chrM_+_9452_9468	0.259696	Brca1	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr15_-_34443508_34443640	0.258716	Brca1	ENSMUST00000079735.5|Rpl30|ENSMUSG00000058600.7|ribosomal protein L30
mm10_v2_chr4_+_148000722_148000754	0.249725	Brca1	ENSMUST00000103230.4|Nppa|ENSMUSG00000041616.9|natriuretic peptide type A
mm10_v2_chr6_-_122340525_122340561	0.243963	Brca1	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr11_+_97703394_97703455	0.242815	Brca1	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr4_+_100776664_100776692	0.237903	Brca1	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr1_+_135729147_135729234	0.234652	Brca1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr17_+_8165501_8165540	0.23255	Brca1	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr2_-_34870921_34870980	0.229476	Brca1	ENSMUST00000028225.5|Psmd5|ENSMUSG00000026869.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm10_v2_chr3_+_96172327_96172338	0.228097	Brca1	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr7_-_17027807_17027846	0.225703	Brca1	ENSMUST00000142597.1|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr13_+_100651607_100651631	0.223814	Brca1	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr19_+_45560569_45560644	0.222883	Brca1	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr14_-_54864055_54864158	0.215857	Brca1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr4_+_10874498_10874607	0.213558	Brca1	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chr3_-_127553233_127553364	0.213134	Brca1	ENSMUST00000029588.5|Larp7|ENSMUSG00000027968.7|La ribonucleoprotein domain family, member 7
mm10_v2_chr1_-_171281181_171281192	0.206156	Brca1	ENSMUST00000073120.4|Ppox|ENSMUSG00000062729.5|protoporphyrinogen oxidase
mm10_v2_chr15_+_10952332_10952364	0.198722	Brca1	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr3_-_51277470_51277514	0.198093	Brca1	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr19_-_7295394_7295468	0.193005	Brca1	ENSMUST00000025921.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr12_+_87266696_87266760	0.189062	Brca1	ENSMUST00000021425.6|Ahsa1|ENSMUSG00000021037.6|AHA1, activator of heat shock protein ATPase 1
mm10_v2_chr1_+_192190771_192190821	0.188742	Brca1	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr17_-_47611449_47611544	0.187951	Brca1	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr7_-_80947765_80947780	0.183641	Brca1	ENSMUST00000026818.5|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000117383.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000119980.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr2_+_174330006_174330126	0.179857	Brca1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr12_-_108894116_108894174	0.170674	Brca1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chrX_-_150589844_150589861	0.165567	Brca1	ENSMUST00000112725.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112720.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2
mm10_v2_chr1_+_182124737_182124800	0.163348	Brca1	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr1_-_33814591_33814600	0.163204	Brca1	ENSMUST00000019861.6|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chrM_+_8600_8616	0.16259	Brca1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr2_+_167932327_167932379	0.161508	Brca1	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr7_-_80947499_80947579	0.161459	Brca1	ENSMUST00000120285.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr3_-_90433603_90433636	0.155617	Brca1	ENSMUST00000029542.5|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3 	ENSMUST00000071488.3|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3
mm10_v2_chr9_+_44773191_44773263	0.154566	Brca1	ENSMUST00000147559.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr7_-_19715395_19715460	0.153691	Brca1	ENSMUST00000032555.9|Tomm40|ENSMUSG00000002984.10|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENSMUST00000093552.5|Tomm40|ENSMUSG00000002984.10|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm10_v2_chr1_+_172148015_172148048	0.152182	Brca1	ENSMUST00000074144.5|Dcaf8|ENSMUSG00000026554.10|DDB1 and CUL4 associated factor 8
mm10_v2_chr15_-_82016134_82016170	0.148801	Brca1	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr8_-_107263248_107263248	0.143236	Brca1	ENSMUST00000080443.6|Rps18-ps3|ENSMUSG00000057657.3|ribosomal protein S18, pseudogene 3
mm10_v2_chr12_-_110695860_110695951	0.140055	Brca1	ENSMUST00000149189.1|Hsp90aa1|ENSMUSG00000021270.7|heat shock protein 90, alpha (cytosolic), class A member 1
mm10_v2_chr17_+_7945653_7945653	0.134914	Brca1	ENSMUST00000097423.2|Rsph3a|ENSMUSG00000073471.2|radial spoke 3A homolog (Chlamydomonas)
mm10_v2_chr12_-_99393010_99393090	0.128792	Brca1	ENSMUST00000177451.1|Foxn3|ENSMUSG00000033713.5|forkhead box N3
mm10_v2_chr3_-_158031705_158031774	0.116807	Brca1	ENSMUST00000072875.8|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr5_-_123666682_123666695	0.115239	Brca1	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr2_-_155582656_155582668	0.115003	Brca1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr5_+_147077050_147077050	0.109217	Brca1	ENSMUST00000050970.3|Polr1d|ENSMUSG00000029642.7|polymerase (RNA) I polypeptide D
mm10_v2_chr12_+_108894272_108894317	0.1014	Brca1	ENSMUST00000167816.1|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25 	ENSMUST00000047115.7|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25
mm10_v2_chr3_-_95882232_95882251	0.098569	Brca1	ENSMUST00000161866.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr17_-_15498263_15498276	0.0887231	Brca1	ENSMUST00000014913.9|Psmb1|ENSMUSG00000014769.9|proteasome (prosome, macropain) subunit, beta type 1
mm10_v2_chr12_+_4082574_4082594	0.0820696	Brca1	ENSMUST00000020986.7|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr16_-_11066141_11066165	0.0811358	Brca1	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr1_+_66386968_66386999	0.0806723	Brca1	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr9_+_59589288_59589353	0.0741754	Brca1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr7_-_35056467_35056556	0.0740241	Brca1	ENSMUST00000130491.1|Cebpg|ENSMUSG00000056216.8|CCAAT/enhancer binding protein (C/EBP), gamma
mm10_v2_chr15_-_27681498_27681554	0.0702531	Brca1	ENSMUST00000100739.3|Fam105a|ENSMUSG00000056069.8|family with sequence similarity 105, member A
mm10_v2_chr6_+_100833606_100833663	0.0655468	Brca1	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr18_+_36793918_36793937	0.0637262	Brca1	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr4_-_98817537_98817706	0.0615646	Brca1	ENSMUST00000102790.3|Kank4|ENSMUSG00000035407.8|KN motif and ankyrin repeat domains 4
mm10_v2_chr4_+_133176336_133176371	0.0602377	Brca1	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr2_-_152831665_152831735	0.0601214	Brca1	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr18_+_42275353_42275392	0.0528207	Brca1	ENSMUST00000046972.7|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27 	ENSMUST00000091920.5|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27
mm10_v2_chr11_+_70970467_70970517	0.0392151	Brca1	ENSMUST00000178822.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000108529.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000169965.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000167509.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr17_-_6961156_6961156	0.0384532	Brca1	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr17_+_33909481_33909576	0.037246	Brca1	ENSMUST00000173626.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein 	ENSMUST00000174541.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein
mm10_v2_chrX_-_64276937_64277002	0.035054	Brca1	ENSMUST00000114679.1|Slitrk4|ENSMUSG00000046699.8|SLIT and NTRK-like family, member 4 	ENSMUST00000069926.7|Slitrk4|ENSMUSG00000046699.8|SLIT and NTRK-like family, member 4
mm10_v2_chr12_+_103388656_103388723	0.0337812	Brca1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr3_-_88951146_88951213	0.0316516	Brca1	ENSMUST00000173135.1|Dap3|ENSMUSG00000068921.8|death associated protein 3
mm10_v2_chr4_+_43632185_43632185	0.0269163	Brca1	ENSMUST00000107874.2|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr2_-_91183017_91183060	0.0171797	Brca1	ENSMUST00000066420.5|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr17_+_40811089_40811133	0.0141521	Brca1	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr1_+_87326997_87327006	0.0126977	Brca1	ENSMUST00000027475.8|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr8_+_84872105_84872112	0.00970371	Brca1	ENSMUST00000136026.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2 	ENSMUST00000170296.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2
mm10_v2_chr2_-_91182848_91182933	0.00644038	Brca1	ENSMUST00000111370.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000111376.1|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000099723.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
