mm10_v2_chr6_-_23248264_23248390	3.98075	Homez	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr13_-_85127514_85127514	3.32099	Homez	ENSMUST00000179230.1|Gm4076|ENSMUSG00000096449.1|predicted gene 4076
mm10_v2_chr4_-_117178726_117178754	2.77423	Homez	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr4_+_44300876_44300936	2.55145	Homez	ENSMUST00000045607.5|Melk|ENSMUSG00000035683.7|maternal embryonic leucine zipper kinase
mm10_v2_chr4_+_115057683_115057811	2.42653	Homez	ENSMUST00000161601.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr8_-_4779513_4779591	2.4051	Homez	ENSMUST00000022945.7|Shcbp1|ENSMUSG00000022322.7|Shc SH2-domain binding protein 1
mm10_v2_chr16_-_26989974_26989974	2.1166	Homez	ENSMUST00000089832.4|Gmnc|ENSMUSG00000068428.6|geminin coiled-coil domain containing
mm10_v2_chr4_+_115057410_115057438	2.08365	Homez	ENSMUST00000136946.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr2_+_71389239_71389278	2.06341	Homez	ENSMUST00000028408.2|Hat1|ENSMUSG00000027018.5|histone aminotransferase 1
mm10_v2_chr9_-_36726374_36726658	1.96841	Homez	ENSMUST00000172702.2|Chek1|ENSMUSG00000032113.9|checkpoint kinase 1 	ENSMUST00000172742.1|Chek1|ENSMUSG00000032113.9|checkpoint kinase 1 	ENSMUST00000034625.5|Chek1|ENSMUSG00000032113.9|checkpoint kinase 1
mm10_v2_chr6_+_85587524_85587544	1.92866	Homez	ENSMUST00000072018.5|Alms1|ENSMUSG00000063810.5|Alstrom syndrome 1
mm10_v2_chr18_+_50030977_50031043	1.9108	Homez	ENSMUST00000145726.1|Tnfaip8|ENSMUSG00000062210.7|tumor necrosis factor, alpha-induced protein 8 	ENSMUST00000128377.1|Tnfaip8|ENSMUSG00000062210.7|tumor necrosis factor, alpha-induced protein 8
mm10_v2_chr3_-_63899437_63899477	1.79973	Homez	ENSMUST00000159188.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000177143.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr17_+_87635974_87635990	1.74012	Homez	ENSMUST00000053577.8|Epcam|ENSMUSG00000045394.8|epithelial cell adhesion molecule
mm10_v2_chr8_+_116921735_116921752	1.70621	Homez	ENSMUST00000034205.4|Cenpn|ENSMUSG00000031756.4|centromere protein N
mm10_v2_chr3_+_5218516_5218544	1.69178	Homez	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr1_-_163994767_163994808	1.66456	Homez	ENSMUST00000097493.3|BC055324|ENSMUSG00000041406.8|cDNA sequence BC055324 	ENSMUST00000045876.6|BC055324|ENSMUSG00000041406.8|cDNA sequence BC055324
mm10_v2_chr19_-_36919606_36919622	1.59831	Homez	ENSMUST00000057337.7|Fgfbp3|ENSMUSG00000047632.10|fibroblast growth factor binding protein 3
mm10_v2_chr3_+_5218546_5218561	1.59428	Homez	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr5_-_8422695_8422727	1.59178	Homez	ENSMUST00000171808.1|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae)
mm10_v2_chr10_-_63421739_63421739	1.56613	Homez	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr5_-_8422582_8422693	1.54462	Homez	ENSMUST00000168500.1|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae) 	ENSMUST00000002368.9|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae)
mm10_v2_chr9_+_91368970_91369073	1.53563	Homez	ENSMUST00000172646.1|Zic4|ENSMUSG00000036972.8|zinc finger protein of the cerebellum 4
mm10_v2_chr7_-_62464505_62464548	1.44272	Homez	ENSMUST00000094339.2|Peg12|ENSMUSG00000070526.2|paternally expressed 12
mm10_v2_chr9_-_64172879_64172918	1.41456	Homez	ENSMUST00000176299.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000130127.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000176794.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000177045.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein
mm10_v2_chr14_-_47276790_47276848	1.37736	Homez	ENSMUST00000111792.1|Wdhd1|ENSMUSG00000037572.10|WD repeat and HMG-box DNA binding protein 1 	ENSMUST00000111791.1|Wdhd1|ENSMUSG00000037572.10|WD repeat and HMG-box DNA binding protein 1 	ENSMUST00000111790.1|Wdhd1|ENSMUSG00000037572.10|WD repeat and HMG-box DNA binding protein 1
mm10_v2_chr11_-_106998483_106998491	1.31715	Homez	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr1_-_138619687_138619759	1.30928	Homez	ENSMUST00000027642.2|Nek7|ENSMUSG00000026393.4|NIMA (never in mitosis gene a)-related expressed kinase 7
mm10_v2_chr9_+_91368811_91368828	1.3017	Homez	ENSMUST00000173054.1|Zic4|ENSMUSG00000036972.8|zinc finger protein of the cerebellum 4
mm10_v2_chrX_+_139217166_139217190	1.2935	Homez	ENSMUST00000166444.1|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000170671.1|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000113041.2|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000113042.2|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1
mm10_v2_chr8_-_72305276_72305276	1.29041	Homez	ENSMUST00000075602.6|Gm10282|ENSMUSG00000070713.4|predicted pseudogene 10282
mm10_v2_chr7_+_67647405_67647456	1.28798	Homez	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr6_+_30723541_30723552	1.2435	Homez	ENSMUST00000115127.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr11_+_101627942_101627972	1.21492	Homez	ENSMUST00000010506.3|Rdm1|ENSMUSG00000010362.3|RAD52 motif 1
mm10_v2_chr1_-_20820213_20820286	1.1924	Homez	ENSMUST00000053266.9|Mcm3|ENSMUSG00000041859.9|minichromosome maintenance deficient 3 (S. cerevisiae)
mm10_v2_chr3_+_5218589_5218614	1.1842	Homez	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr3_+_90220783_90220830	1.15194	Homez	ENSMUST00000065418.6|Rab13|ENSMUSG00000027935.8|RAB13, member RAS oncogene family
mm10_v2_chr18_-_62756275_62756347	1.14903	Homez	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr3_+_138143429_138143477	1.0996	Homez	ENSMUST00000040321.6|Trmt10a|ENSMUSG00000004127.6|tRNA methyltransferase 10A
mm10_v2_chr7_-_30664986_30664999	1.03109	Homez	ENSMUST00000019697.8|Haus5|ENSMUSG00000078762.4|HAUS augmin-like complex, subunit 5
mm10_v2_chr11_+_77686155_77686179	1.03084	Homez	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr4_+_63215402_63215435	1.02693	Homez	ENSMUST00000036300.6|Col27a1|ENSMUSG00000045672.9|collagen, type XXVII, alpha 1
mm10_v2_chr1_+_78657874_78658038	1.00576	Homez	ENSMUST00000134566.1|Acsl3|ENSMUSG00000032883.9|acyl-CoA synthetase long-chain family member 3 	ENSMUST00000142704.1|Acsl3|ENSMUSG00000032883.9|acyl-CoA synthetase long-chain family member 3 	ENSMUST00000053760.5|Utp14b|ENSMUSG00000079470.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)
mm10_v2_chr9_+_87022014_87022179	0.998044	Homez	ENSMUST00000168529.2|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000174724.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000173126.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4
mm10_v2_chr15_+_90224293_90224374	0.992381	Homez	ENSMUST00000100309.1|Alg10b|ENSMUSG00000075470.1|asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)
mm10_v2_chr1_+_173420567_173420622	0.989027	Homez	ENSMUST00000173023.1|Aim2|ENSMUSG00000037860.9|absent in melanoma 2
mm10_v2_chr1_-_139377041_139377078	0.986915	Homez	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr8_-_116921365_116921392	0.986905	Homez	ENSMUST00000128304.1|Cmc2|ENSMUSG00000014633.9|COX assembly mitochondrial protein 2
mm10_v2_chr8_-_116921408_116921455	0.981823	Homez	ENSMUST00000078589.6|Cmc2|ENSMUSG00000014633.9|COX assembly mitochondrial protein 2 	ENSMUST00000148235.1|Cmc2|ENSMUSG00000014633.9|COX assembly mitochondrial protein 2
mm10_v2_chr9_+_89199319_89199379	0.956042	Homez	ENSMUST00000138109.1|Mthfs|ENSMUSG00000066442.10|5, 10-methenyltetrahydrofolate synthetase
mm10_v2_chr18_+_10725530_10725564	0.941564	Homez	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr6_+_137754529_137754599	0.928616	Homez	ENSMUST00000087675.6|Dera|ENSMUSG00000030225.9|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)
mm10_v2_chr6_+_71282280_71282280	0.921611	Homez	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr19_-_30175414_30175436	0.920293	Homez	ENSMUST00000025778.7|Gldc|ENSMUSG00000024827.9|glycine decarboxylase
mm10_v2_chr3_+_51415986_51416044	0.915478	Homez	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr13_-_8871696_8871749	0.912462	Homez	ENSMUST00000054251.6|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37 	ENSMUST00000176813.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chrX_-_139714481_139714507	0.911056	Homez	ENSMUST00000183728.1|Gm15013|ENSMUSG00000098559.1|predicted gene 15013
mm10_v2_chrX_+_36795642_36795653	0.907201	Homez	ENSMUST00000016463.3|Slc25a5|ENSMUSG00000016319.3|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm10_v2_chr6_-_112696604_112696686	0.900463	Homez	ENSMUST00000113182.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000113180.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000068487.5|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000077088.4|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae)
mm10_v2_chr6_-_42645254_42645254	0.898618	Homez	ENSMUST00000031879.3|Fam115c|ENSMUSG00000029851.4|family with sequence similarity 115, member C
mm10_v2_chr13_-_8871751_8871909	0.885098	Homez	ENSMUST00000175958.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr4_-_126429501_126429556	0.867255	Homez	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr14_-_27508460_27508503	0.863856	Homez	ENSMUST00000050480.6|Ccdc66|ENSMUSG00000046753.9|coiled-coil domain containing 66
mm10_v2_chr1_-_136230289_136230332	0.853683	Homez	ENSMUST00000150163.1|5730559C18Rik|ENSMUSG00000041605.10|RIKEN cDNA 5730559C18 gene 	ENSMUST00000144464.1|5730559C18Rik|ENSMUSG00000041605.10|RIKEN cDNA 5730559C18 gene
mm10_v2_chr17_+_24426676_24426701	0.850045	Homez	ENSMUST00000024946.5|Eci1|ENSMUSG00000024132.5|enoyl-Coenzyme A delta isomerase 1
mm10_v2_chr1_+_169969409_169969454	0.833458	Homez	ENSMUST00000180638.1|3110045C21Rik|ENSMUSG00000097503.1|RIKEN cDNA 3110045C21 gene
mm10_v2_chr1_-_72212249_72212307	0.832681	Homez	ENSMUST00000048860.7|Mreg|ENSMUSG00000039395.7|melanoregulin
mm10_v2_chr1_+_59684949_59685023	0.824355	Homez	ENSMUST00000027174.3|Nop58|ENSMUSG00000026020.3|NOP58 ribonucleoprotein
mm10_v2_chr15_-_83464595_83464614	0.821521	Homez	ENSMUST00000171436.1|Pacsin2|ENSMUSG00000016664.8|protein kinase C and casein kinase substrate in neurons 2
mm10_v2_chr18_+_35770318_35770318	0.813414	Homez	ENSMUST00000165299.1|Gm16490|ENSMUSG00000091842.1|predicted gene 16490
mm10_v2_chr12_-_24493656_24493656	0.800312	Homez	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr18_+_84088077_84088178	0.799258	Homez	ENSMUST00000060223.2|Zadh2|ENSMUSG00000049090.2|zinc binding alcohol dehydrogenase, domain containing 2
mm10_v2_chr3_+_85915722_85915722	0.791662	Homez	ENSMUST00000054148.7|Gm9790|ENSMUSG00000044330.7|predicted gene 9790
mm10_v2_chr16_+_34690548_34690616	0.78685	Homez	ENSMUST00000023532.6|Ccdc14|ENSMUSG00000022833.6|coiled-coil domain containing 14
mm10_v2_chr2_+_119034783_119034869	0.780986	Homez	ENSMUST00000028796.1|Rpusd2|ENSMUSG00000027324.1|RNA pseudouridylate synthase domain containing 2
mm10_v2_chr5_-_21785115_21785251	0.777844	Homez	ENSMUST00000115193.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115192.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115195.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000030771.5|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2
mm10_v2_chr1_-_181144133_181144183	0.777778	Homez	ENSMUST00000027797.7|Nvl|ENSMUSG00000026516.7|nuclear VCP-like
mm10_v2_chr12_-_80260356_80260371	0.766863	Homez	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chr14_-_100149764_100149764	0.762662	Homez	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr5_-_149051300_149051390	0.757179	Homez	ENSMUST00000110505.1|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr4_+_148602527_148602583	0.75466	Homez	ENSMUST00000105701.2|Masp2|ENSMUSG00000028979.11|mannan-binding lectin serine peptidase 2 	ENSMUST00000052060.6|Masp2|ENSMUSG00000028979.11|mannan-binding lectin serine peptidase 2
mm10_v2_chr4_-_40269778_40269850	0.74327	Homez	ENSMUST00000042575.6|Topors|ENSMUSG00000036822.6|topoisomerase I binding, arginine/serine-rich
mm10_v2_chr5_-_113989739_113989744	0.741611	Homez	ENSMUST00000077689.7|Ssh1|ENSMUSG00000042121.10|slingshot homolog 1 (Drosophila)
mm10_v2_chr15_+_100154379_100154411	0.737778	Homez	ENSMUST00000023768.6|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila) 	ENSMUST00000108971.2|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr7_-_38227975_38228000	0.718341	Homez	ENSMUST00000098513.4|Plekhf1|ENSMUSG00000074170.4|pleckstrin homology domain containing, family F (with FYVE domain) member 1
mm10_v2_chr1_+_78657825_78657868	0.715942	Homez	ENSMUST00000035779.8|Acsl3|ENSMUSG00000032883.9|acyl-CoA synthetase long-chain family member 3
mm10_v2_chr4_-_134767940_134768024	0.70681	Homez	ENSMUST00000037828.6|Ldlrap1|ENSMUSG00000037295.6|low density lipoprotein receptor adaptor protein 1
mm10_v2_chr8_-_111027752_111027791	0.705701	Homez	ENSMUST00000040241.8|Ddx19b|ENSMUSG00000033658.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm10_v2_chr4_-_131937165_131937211	0.703512	Homez	ENSMUST00000155990.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr3_-_138143352_138143396	0.697503	Homez	ENSMUST00000098580.2|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr2_-_176144697_176144697	0.696876	Homez	ENSMUST00000178872.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr6_-_55175019_55175043	0.691965	Homez	ENSMUST00000003569.5|Inmt|ENSMUSG00000003477.5|indolethylamine N-methyltransferase
mm10_v2_chr4_-_6454262_6454330	0.681965	Homez	ENSMUST00000029910.5|Nsmaf|ENSMUSG00000028245.9|neutral sphingomyelinase (N-SMase) activation associated factor
mm10_v2_chr8_+_85171322_85171322	0.674332	Homez	ENSMUST00000076896.5|Gm6531|ENSMUSG00000062687.5|predicted gene 6531
mm10_v2_chr18_+_86711059_86711110	0.674075	Homez	ENSMUST00000068423.3|Cbln2|ENSMUSG00000024647.8|cerebellin 2 precursor protein
mm10_v2_chr2_-_77946331_77946373	0.672558	Homez	ENSMUST00000111821.2|Cwc22|ENSMUSG00000027014.8|CWC22 spliceosome-associated protein homolog (S. cerevisiae) 	ENSMUST00000111818.1|Cwc22|ENSMUSG00000027014.8|CWC22 spliceosome-associated protein homolog (S. cerevisiae)
mm10_v2_chr1_+_163994866_163994904	0.672156	Homez	ENSMUST00000111490.1|Mettl18|ENSMUSG00000041396.7|methyltransferase like 18 	ENSMUST00000045694.7|Mettl18|ENSMUSG00000041396.7|methyltransferase like 18
mm10_v2_chr2_-_77946180_77946199	0.671724	Homez	ENSMUST00000111824.1|Cwc22|ENSMUSG00000027014.8|CWC22 spliceosome-associated protein homolog (S. cerevisiae) 	ENSMUST00000111819.1|Cwc22|ENSMUSG00000027014.8|CWC22 spliceosome-associated protein homolog (S. cerevisiae) 	ENSMUST00000128963.1|Cwc22|ENSMUSG00000027014.8|CWC22 spliceosome-associated protein homolog (S. cerevisiae)
mm10_v2_chr5_-_45856496_45856552	0.670943	Homez	ENSMUST00000087164.3|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like 	ENSMUST00000121573.1|Lcorl|ENSMUSG00000015882.11|ligand dependent nuclear receptor corepressor-like
mm10_v2_chr15_+_102407144_102407269	0.669679	Homez	ENSMUST00000169619.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1
mm10_v2_chr15_+_9071252_9071273	0.653039	Homez	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr1_-_175979114_175979114	0.648335	Homez	ENSMUST00000104983.1|B020018G12Rik|ENSMUSG00000078184.1|RIKEN cDNA B020018G12 gene
mm10_v2_chr9_-_44234014_44234046	0.64078	Homez	ENSMUST00000037644.6|Cbl|ENSMUSG00000034342.8|Casitas B-lineage lymphoma
mm10_v2_chr3_+_157534103_157534160	0.6389	Homez	ENSMUST00000106058.1|Zranb2|ENSMUSG00000028180.12|zinc finger, RAN-binding domain containing 2
mm10_v2_chr2_-_106974383_106974424	0.635603	Homez	ENSMUST00000028536.6|Arl14ep|ENSMUSG00000027122.9|ADP-ribosylation factor-like 14 effector protein
mm10_v2_chr19_-_60790692_60790700	0.623678	Homez	ENSMUST00000025955.6|Eif3a|ENSMUSG00000024991.7|eukaryotic translation initiation factor 3, subunit A
mm10_v2_chr9_+_55150050_55150083	0.621455	Homez	ENSMUST00000122441.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr8_-_84065137_84065137	0.612695	Homez	ENSMUST00000098592.2|Gm10643|ENSMUSG00000074215.2|predicted gene 10643
mm10_v2_chr2_-_77946375_77946392	0.603957	Homez	ENSMUST00000065889.3|Cwc22|ENSMUSG00000027014.8|CWC22 spliceosome-associated protein homolog (S. cerevisiae)
mm10_v2_chr12_-_40248073_40248086	0.603104	Homez	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr10_+_63386550_63386576	0.583841	Homez	ENSMUST00000043317.5|Dnajc12|ENSMUSG00000036764.5|DnaJ (Hsp40) homolog, subfamily C, member 12
mm10_v2_chr4_+_132638987_132639118	0.573896	Homez	ENSMUST00000135299.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000081726.6|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000180250.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000020197.7|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000079157.4|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila)
mm10_v2_chr3_-_79841729_79841729	0.57215	Homez	ENSMUST00000168038.1|Tmem144|ENSMUSG00000027956.5|transmembrane protein 144
mm10_v2_chrX_-_157568983_157568991	0.570416	Homez	ENSMUST00000065806.4|Yy2|ENSMUSG00000091736.2|Yy2 transcription factor
mm10_v2_chr19_-_12501996_12502152	0.570008	Homez	ENSMUST00000045521.7|Dtx4|ENSMUSG00000039982.7|deltex 4 homolog (Drosophila)
mm10_v2_chr6_-_56362356_56362519	0.566142	Homez	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr4_-_141723401_141723436	0.559625	Homez	ENSMUST00000102484.4|Ddi2|ENSMUSG00000078515.3|DNA-damage inducible protein 2 	ENSMUST00000177592.1|Rsc1a1|ENSMUSG00000040715.11|regulatory solute carrier protein, family 1, member 1
mm10_v2_chr18_+_4375583_4375623	0.546709	Homez	ENSMUST00000025077.6|Mtpap|ENSMUSG00000024234.6|mitochondrial poly(A) polymerase
mm10_v2_chr9_-_100486788_100486788	0.541	Homez	ENSMUST00000098458.3|Il20rb|ENSMUSG00000044244.12|interleukin 20 receptor beta
mm10_v2_chr14_+_56887795_56887795	0.539669	Homez	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr13_+_66904914_66904914	0.535029	Homez	ENSMUST00000168767.2|Gm10767|ENSMUSG00000074826.4|predicted gene 10767
mm10_v2_chr16_+_11203375_11203448	0.526135	Homez	ENSMUST00000181526.1|2610020C07Rik|ENSMUSG00000097537.1|RIKEN cDNA 2610020C07 gene
mm10_v2_chr5_+_21785253_21785301	0.524619	Homez	ENSMUST00000030769.5|Psmc2|ENSMUSG00000028932.7|proteasome (prosome, macropain) 26S subunit, ATPase 2
mm10_v2_chr1_-_14310198_14310218	0.519875	Homez	ENSMUST00000168081.2|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila) 	ENSMUST00000027066.6|Eya1|ENSMUSG00000025932.8|eyes absent 1 homolog (Drosophila)
mm10_v2_chr19_+_47731743_47731768	0.518074	Homez	ENSMUST00000099353.4|Sfr1|ENSMUSG00000025066.9|SWI5 dependent recombination repair 1
mm10_v2_chr2_-_25332481_25332571	0.50557	Homez	ENSMUST00000180841.1|AA543186|ENSMUSG00000097345.1|expressed sequence AA543186
mm10_v2_chr9_+_110132015_110132102	0.49575	Homez	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr8_+_70673364_70673432	0.492333	Homez	ENSMUST00000146972.1|Lsm4|ENSMUSG00000031848.8|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr13_-_117025505_117025541	0.471666	Homez	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr6_-_125231772_125231860	0.468354	Homez	ENSMUST00000043422.7|Tapbpl|ENSMUSG00000038213.7|TAP binding protein-like
mm10_v2_chr3_-_54714353_54714353	0.467769	Homez	ENSMUST00000178832.1|Gm21958|ENSMUSG00000094487.1|predicted gene, 21958
mm10_v2_chr7_-_46958475_46958527	0.465304	Homez	ENSMUST00000094398.4|Uevld|ENSMUSG00000043262.8|UEV and lactate/malate dehyrogenase domains
mm10_v2_chr12_+_65036319_65036358	0.452295	Homez	ENSMUST00000120580.1|Prpf39|ENSMUSG00000035597.12|PRP39 pre-mRNA processing factor 39 homolog (yeast)
mm10_v2_chrX_-_7947763_7947776	0.441539	Homez	ENSMUST00000154244.1|Hdac6|ENSMUSG00000031161.9|histone deacetylase 6
mm10_v2_chr5_+_129846980_129847036	0.440578	Homez	ENSMUST00000171300.1|Sumf2|ENSMUSG00000025538.9|sulfatase modifying factor 2
mm10_v2_chr8_-_46080284_46080284	0.434503	Homez	ENSMUST00000177186.1|Snx25|ENSMUSG00000038291.10|sorting nexin 25
mm10_v2_chr18_-_43477764_43477836	0.431777	Homez	ENSMUST00000057110.9|Eif3j2|ENSMUSG00000043424.9|eukaryotic translation initiation factor 3, subunit J2
mm10_v2_chrM_+_11734_11757	0.431623	Homez	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr17_+_22689771_22689771	0.428416	Homez	ENSMUST00000055305.8|Gm9805|ENSMUSG00000046088.8|predicted gene 9805
mm10_v2_chr18_-_66002612_66002637	0.424174	Homez	ENSMUST00000120461.1|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1 	ENSMUST00000048260.7|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1
mm10_v2_chr9_+_22475867_22475889	0.413297	Homez	ENSMUST00000128812.1|Bbs9|ENSMUSG00000035919.10|Bardet-Biedl syndrome 9 (human)
mm10_v2_chr4_+_103143052_103143071	0.409304	Homez	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr7_+_49910112_49910146	0.398158	Homez	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr11_-_58330319_58330358	0.388292	Homez	ENSMUST00000065533.2|Gm9900|ENSMUSG00000053218.2|predicted gene 9900
mm10_v2_chr17_+_26542760_26542760	0.386722	Homez	ENSMUST00000090257.4|Gm8225|ENSMUSG00000068604.4|predicted gene 8225
mm10_v2_chrX_+_20059535_20059574	0.377699	Homez	ENSMUST00000044138.7|Chst7|ENSMUSG00000037347.7|carbohydrate (N-acetylglucosamino) sulfotransferase 7
mm10_v2_chr7_-_12818837_12818865	0.377398	Homez	ENSMUST00000121215.1|Zfp329|ENSMUSG00000057894.10|zinc finger protein 329 	ENSMUST00000108546.1|Zfp329|ENSMUSG00000057894.10|zinc finger protein 329 	ENSMUST00000072222.7|Zfp329|ENSMUSG00000057894.10|zinc finger protein 329
mm10_v2_chr14_-_54653616_54653701	0.372645	Homez	ENSMUST00000126166.1|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1 	ENSMUST00000141453.1|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1 	ENSMUST00000150371.1|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1 	ENSMUST00000123875.1|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1 	ENSMUST00000022794.7|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1 	ENSMUST00000148754.3|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1
mm10_v2_chr1_+_4857760_4857814	0.366374	Homez	ENSMUST00000081551.7|Tcea1|ENSMUSG00000033813.9|transcription elongation factor A (SII) 1
mm10_v2_chr6_+_58640536_58640596	0.366138	Homez	ENSMUST00000145161.1|Abcg2|ENSMUSG00000029802.7|ATP-binding cassette, sub-family G (WHITE), member 2 	ENSMUST00000114294.1|Abcg2|ENSMUSG00000029802.7|ATP-binding cassette, sub-family G (WHITE), member 2
mm10_v2_chr8_+_105900421_105900467	0.355916	Homez	ENSMUST00000049699.8|Pskh1|ENSMUSG00000048310.8|protein serine kinase H1
mm10_v2_chr1_+_93342854_93342854	0.352393	Homez	ENSMUST00000027494.4|Ppp1r7|ENSMUSG00000026275.7|protein phosphatase 1, regulatory (inhibitor) subunit 7
mm10_v2_chr12_-_99393010_99393090	0.341674	Homez	ENSMUST00000177451.1|Foxn3|ENSMUSG00000033713.5|forkhead box N3
mm10_v2_chr7_-_13278661_13278721	0.341047	Homez	ENSMUST00000144470.1|6330408A02Rik|ENSMUSG00000070814.8|RIKEN cDNA 6330408A02 gene 	ENSMUST00000119558.1|6330408A02Rik|ENSMUSG00000070814.8|RIKEN cDNA 6330408A02 gene 	ENSMUST00000108532.2|6330408A02Rik|ENSMUSG00000070814.8|RIKEN cDNA 6330408A02 gene
mm10_v2_chr2_+_85037448_85037530	0.336223	Homez	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr6_+_149141638_149141663	0.329826	Homez	ENSMUST00000166416.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111551.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr1_-_52232296_52232432	0.329182	Homez	ENSMUST00000114512.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr8_+_88199194_88199224	0.327	Homez	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr1_-_36244245_36244320	0.32512	Homez	ENSMUST00000046875.7|Uggt1|ENSMUSG00000037470.8|UDP-glucose glycoprotein glucosyltransferase 1
mm10_v2_chr12_-_69184056_69184083	0.320733	Homez	ENSMUST00000054544.6|Rpl36al|ENSMUSG00000049751.6|ribosomal protein L36A-like
mm10_v2_chr15_+_100353149_100353200	0.319461	Homez	ENSMUST00000075675.5|AB099516|ENSMUSG00000093789.1|cDNA sequence AB099516 	ENSMUST00000088142.5|Mettl7a2|ENSMUSG00000056487.8|methyltransferase like 7A2 	ENSMUST00000176287.1|Mettl7a2|ENSMUSG00000056487.8|methyltransferase like 7A2
mm10_v2_chr7_+_127470354_127470371	0.318408	Homez	ENSMUST00000106292.1|Prr14|ENSMUSG00000030822.9|proline rich 14
mm10_v2_chr3_+_127791374_127791390	0.315422	Homez	ENSMUST00000171621.1|Tifa|ENSMUSG00000046688.8|TRAF-interacting protein with forkhead-associated domain
mm10_v2_chr9_-_58249660_58249672	0.313824	Homez	ENSMUST00000124063.1|Pml|ENSMUSG00000036986.10|promyelocytic leukemia 	ENSMUST00000126690.1|Pml|ENSMUSG00000036986.10|promyelocytic leukemia
mm10_v2_chr12_-_54695813_54695828	0.311314	Homez	ENSMUST00000110713.3|Eapp|ENSMUSG00000054302.9|E2F-associated phosphoprotein
mm10_v2_chr9_+_64179289_64179349	0.305635	Homez	ENSMUST00000034965.6|Snapc5|ENSMUSG00000032398.6|small nuclear RNA activating complex, polypeptide 5
mm10_v2_chrX_+_112615301_112615301	0.303814	Homez	ENSMUST00000122805.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr3_-_100162364_100162414	0.301303	Homez	ENSMUST00000052120.7|Wdr3|ENSMUSG00000033285.9|WD repeat domain 3
mm10_v2_chr1_+_132477361_132477412	0.297851	Homez	ENSMUST00000027700.8|Rbbp5|ENSMUSG00000026439.8|retinoblastoma binding protein 5
mm10_v2_chr2_-_175327598_175327598	0.29669	Homez	ENSMUST00000109050.2|Gm4631|ENSMUSG00000078899.3|predicted gene 4631
mm10_v2_chrX_-_41911877_41911912	0.295229	Homez	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr2_+_69723071_69723093	0.290076	Homez	ENSMUST00000040915.8|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr10_+_111298679_111298689	0.27425	Homez	ENSMUST00000040454.3|Bbs10|ENSMUSG00000035759.3|Bardet-Biedl syndrome 10 (human)
mm10_v2_chr2_-_26445175_26445226	0.273032	Homez	ENSMUST00000114082.2|Sec16a|ENSMUSG00000026924.11|SEC16 homolog A (S. cerevisiae) 	ENSMUST00000091252.4|Sec16a|ENSMUSG00000026924.11|SEC16 homolog A (S. cerevisiae)
mm10_v2_chr8_+_22060712_22060740	0.270965	Homez	ENSMUST00000072572.6|Alg11|ENSMUSG00000063362.7|asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase) 	ENSMUST00000110737.2|Alg11|ENSMUSG00000063362.7|asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase) 	ENSMUST00000131624.1|Alg11|ENSMUSG00000063362.7|asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
mm10_v2_chr2_+_30281043_30281043	0.270709	Homez	ENSMUST00000143119.2|RP23-395P6.9|ENSMUSG00000098794.1|RP23-395P6.9
mm10_v2_chr5_-_149636164_149636190	0.270548	Homez	ENSMUST00000076410.4|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr1_+_87214286_87214369	0.266713	Homez	ENSMUST00000113231.3|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2
mm10_v2_chr1_+_118321834_118321882	0.258672	Homez	ENSMUST00000027626.6|Mki67ip|ENSMUSG00000026377.6|Mki67 (FHA domain) interacting nucleolar phosphoprotein 	ENSMUST00000112688.3|Mki67ip|ENSMUSG00000026377.6|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm10_v2_chr14_-_68655804_68655842	0.254169	Homez	ENSMUST00000111072.1|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28 	ENSMUST00000022642.5|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28
mm10_v2_chr4_+_146654927_146654927	0.251583	Homez	ENSMUST00000070932.3|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr7_+_97480928_97480966	0.250315	Homez	ENSMUST00000026126.8|Ints4|ENSMUSG00000025133.8|integrator complex subunit 4
mm10_v2_chr14_-_103099560_103099571	0.242307	Homez	ENSMUST00000144141.1|Fbxl3|ENSMUSG00000022124.8|F-box and leucine-rich repeat protein 3
mm10_v2_chr13_+_22043189_22043214	0.24018	Homez	ENSMUST00000110452.1|Hist1h2bj|ENSMUSG00000069300.3|histone cluster 1, H2bj
mm10_v2_chr2_-_58052832_58052870	0.23906	Homez	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chrX_+_52912232_52912361	0.238269	Homez	ENSMUST00000078944.6|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000101587.3|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000154864.2|Phf6|ENSMUSG00000025626.10|PHD finger protein 6
mm10_v2_chr11_-_94242701_94242729	0.235575	Homez	ENSMUST00000061469.3|Wfikkn2|ENSMUSG00000044177.4|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm10_v2_chr5_-_149636331_149636376	0.233467	Homez	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr18_+_32837225_32837240	0.23192	Homez	ENSMUST00000166214.1|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36 	ENSMUST00000053663.9|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36
mm10_v2_chrX_+_47912387_47912442	0.231734	Homez	ENSMUST00000001202.8|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe 	ENSMUST00000115020.1|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe
mm10_v2_chr4_-_116994374_116994413	0.230293	Homez	ENSMUST00000030446.8|Urod|ENSMUSG00000028684.8|uroporphyrinogen decarboxylase
mm10_v2_chr4_-_116994354_116994372	0.228806	Homez	ENSMUST00000130273.1|Urod|ENSMUSG00000028684.8|uroporphyrinogen decarboxylase
mm10_v2_chr5_+_52783055_52783091	0.22866	Homez	ENSMUST00000113904.2|Zcchc4|ENSMUSG00000029179.8|zinc finger, CCHC domain containing 4 	ENSMUST00000031077.8|Zcchc4|ENSMUSG00000029179.8|zinc finger, CCHC domain containing 4
mm10_v2_chr19_-_31765027_31765079	0.226081	Homez	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr13_+_21810428_21810465	0.22338	Homez	ENSMUST00000091745.5|Hist1h2ao|ENSMUSG00000094248.1|histone cluster 1, H2ao
mm10_v2_chr1_-_33757711_33757794	0.221309	Homez	ENSMUST00000044691.7|Bag2|ENSMUSG00000042215.7|BCL2-associated athanogene 2
mm10_v2_chrX_-_37085402_37085402	0.21999	Homez	ENSMUST00000115231.3|Rpl39|ENSMUSG00000079641.3|ribosomal protein L39
mm10_v2_chr11_-_51650813_51650851	0.219485	Homez	ENSMUST00000142721.1|N4bp3|ENSMUSG00000001053.9|NEDD4 binding protein 3 	ENSMUST00000156835.1|N4bp3|ENSMUSG00000001053.9|NEDD4 binding protein 3 	ENSMUST00000001080.9|N4bp3|ENSMUSG00000001053.9|NEDD4 binding protein 3
mm10_v2_chrX_+_101532734_101532777	0.217099	Homez	ENSMUST00000118878.1|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000101341.2|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000149274.1|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr9_-_58249702_58249791	0.215563	Homez	ENSMUST00000135310.1|Pml|ENSMUSG00000036986.10|promyelocytic leukemia 	ENSMUST00000085673.4|Pml|ENSMUSG00000036986.10|promyelocytic leukemia 	ENSMUST00000114136.2|Pml|ENSMUSG00000036986.10|promyelocytic leukemia 	ENSMUST00000153820.1|Pml|ENSMUSG00000036986.10|promyelocytic leukemia 	ENSMUST00000124982.1|Pml|ENSMUSG00000036986.10|promyelocytic leukemia
mm10_v2_chr7_+_133637686_133637742	0.214012	Homez	ENSMUST00000128901.2|2700050L05Rik|ENSMUSG00000039990.9|RIKEN cDNA 2700050L05 gene
mm10_v2_chr17_-_25844514_25844565	0.21285	Homez	ENSMUST00000176709.1|Rhot2|ENSMUSG00000025733.11|ras homolog gene family, member T2
mm10_v2_chr18_-_24121810_24121953	0.209905	Homez	ENSMUST00000055012.5|Ino80c|ENSMUSG00000047989.5|INO80 complex subunit C 	ENSMUST00000153360.1|Ino80c|ENSMUSG00000047989.5|INO80 complex subunit C 	ENSMUST00000141489.1|Ino80c|ENSMUSG00000047989.5|INO80 complex subunit C
mm10_v2_chr1_+_44147847_44147934	0.2023	Homez	ENSMUST00000027214.3|Ercc5|ENSMUSG00000026048.10|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm10_v2_chr9_-_20952838_20952979	0.201839	Homez	ENSMUST00000004202.9|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr10_+_128747850_128747895	0.199799	Homez	ENSMUST00000163377.2|Wibg|ENSMUSG00000064030.8|within bgcn homolog (Drosophila)
mm10_v2_chr13_-_23698454_23698460	0.195688	Homez	ENSMUST00000102967.1|Hist1h4c|ENSMUSG00000060678.4|histone cluster 1, H4c
mm10_v2_chr18_+_7869159_7869209	0.190115	Homez	ENSMUST00000170932.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000167020.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr7_-_46710642_46710687	0.182398	Homez	ENSMUST00000143082.1|Saal1|ENSMUSG00000006763.6|serum amyloid A-like 1
mm10_v2_chr2_+_69722797_69722840	0.181905	Homez	ENSMUST00000090858.3|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr12_-_54695885_54695897	0.179959	Homez	ENSMUST00000067272.8|Eapp|ENSMUSG00000054302.9|E2F-associated phosphoprotein
mm10_v2_chr14_-_103099499_103099554	0.176679	Homez	ENSMUST00000022720.8|Fbxl3|ENSMUSG00000022124.8|F-box and leucine-rich repeat protein 3
mm10_v2_chr17_+_21491256_21491256	0.175645	Homez	ENSMUST00000076664.6|Zfp53|ENSMUSG00000057409.6|zinc finger protein 53
mm10_v2_chr10_+_111125851_111125851	0.172808	Homez	ENSMUST00000171120.1|Gm5428|ENSMUSG00000091086.1|predicted gene 5428
mm10_v2_chr11_+_75999912_75999946	0.168273	Homez	ENSMUST00000066408.5|1700016K19Rik|ENSMUSG00000053783.5|RIKEN cDNA 1700016K19 gene
mm10_v2_chr11_-_45955183_45955193	0.167906	Homez	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr7_+_133637543_133637559	0.166293	Homez	ENSMUST00000051169.6|2700050L05Rik|ENSMUSG00000039990.9|RIKEN cDNA 2700050L05 gene
mm10_v2_chr14_-_52305056_52305130	0.165589	Homez	ENSMUST00000174853.1|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3 	ENSMUST00000022767.9|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3
mm10_v2_chr9_-_44251464_44251491	0.164503	Homez	ENSMUST00000034618.4|Pdzd3|ENSMUSG00000032105.4|PDZ domain containing 3
mm10_v2_chr9_-_60649793_60649805	0.162402	Homez	ENSMUST00000053171.7|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr8_-_104534630_104534646	0.15929	Homez	ENSMUST00000162466.1|Nae1|ENSMUSG00000031878.11|NEDD8 activating enzyme E1 subunit 1 	ENSMUST00000034349.9|Nae1|ENSMUSG00000031878.11|NEDD8 activating enzyme E1 subunit 1
mm10_v2_chrX_-_136743675_136743692	0.157965	Homez	ENSMUST00000166478.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113097.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr16_-_91618986_91619026	0.157106	Homez	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr6_+_83034173_83034252	0.155984	Homez	ENSMUST00000000707.2|Loxl3|ENSMUSG00000000693.4|lysyl oxidase-like 3 	ENSMUST00000101257.3|Loxl3|ENSMUSG00000000693.4|lysyl oxidase-like 3
mm10_v2_chr1_-_168431695_168431750	0.155299	Homez	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr12_-_69183986_69184051	0.15431	Homez	ENSMUST00000110620.1|Rpl36al|ENSMUSG00000049751.6|ribosomal protein L36A-like 	ENSMUST00000110619.1|Rpl36al|ENSMUSG00000049751.6|ribosomal protein L36A-like
mm10_v2_chr6_+_82052307_82052330	0.15397	Homez	ENSMUST00000149023.1|Eva1a|ENSMUSG00000035104.8|eva-1 homolog A (C. elegans)
mm10_v2_chr4_-_14826582_14826589	0.151935	Homez	ENSMUST00000117268.1|Otud6b|ENSMUSG00000040550.10|OTU domain containing 6B
mm10_v2_chr6_+_113393062_113393160	0.151728	Homez	ENSMUST00000138131.2|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3
mm10_v2_chr9_-_21312255_21312333	0.149695	Homez	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chr5_-_135251209_135251242	0.14416	Homez	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chrX_-_49788204_49788243	0.142957	Homez	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr10_+_127849917_127849928	0.141377	Homez	ENSMUST00000077530.2|Rdh19|ENSMUSG00000054052.5|retinol dehydrogenase 19
mm10_v2_chrX_-_57393020_57393040	0.140737	Homez	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr18_-_42262053_42262140	0.133998	Homez	ENSMUST00000097590.3|Lars|ENSMUSG00000024493.8|leucyl-tRNA synthetase
mm10_v2_chr7_-_34313531_34313568	0.131439	Homez	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr9_+_64173364_64173388	0.131284	Homez	ENSMUST00000034966.7|Rpl4|ENSMUSG00000032399.7|ribosomal protein L4
mm10_v2_chr14_-_104522615_104522707	0.130637	Homez	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr6_+_91878034_91878089	0.127862	Homez	ENSMUST00000037783.5|Ccdc174|ENSMUSG00000034083.10|coiled-coil domain containing 174
mm10_v2_chr16_-_8672145_8672161	0.126535	Homez	ENSMUST00000008537.8|Carhsp1|ENSMUSG00000008393.8|calcium regulated heat stable protein 1
mm10_v2_chr2_+_163017354_163017513	0.125157	Homez	ENSMUST00000018002.6|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52 	ENSMUST00000150396.1|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52
mm10_v2_chr6_-_69284319_69284319	0.119129	Homez	ENSMUST00000103349.1|Igkv4-69|ENSMUSG00000076548.1|immunoglobulin kappa variable 4-69
mm10_v2_chr5_+_96173940_96173940	0.117792	Homez	ENSMUST00000048361.8|Gm2840|ENSMUSG00000090468.2|predicted gene 2840
mm10_v2_chr1_+_121431049_121431124	0.117025	Homez	ENSMUST00000036025.9|Ccdc93|ENSMUSG00000026339.12|coiled-coil domain containing 93 	ENSMUST00000112621.1|Ccdc93|ENSMUSG00000026339.12|coiled-coil domain containing 93
mm10_v2_chr8_+_36094828_36094868	0.116353	Homez	ENSMUST00000110492.1|D8Ertd82e|ENSMUSG00000050271.6|DNA segment, Chr 8, ERATO Doi 82, expressed
mm10_v2_chr12_-_59011996_59012034	0.115416	Homez	ENSMUST00000021375.5|Sec23a|ENSMUSG00000020986.7|SEC23A (S. cerevisiae)
mm10_v2_chr11_-_58904219_58904236	0.114772	Homez	ENSMUST00000102703.1|Zfp39|ENSMUSG00000037001.10|zinc finger protein 39
mm10_v2_chr12_-_87775755_87775755	0.113032	Homez	ENSMUST00000164517.2|Gm21319|ENSMUSG00000095724.1|predicted gene, 21319
mm10_v2_chr13_-_41358990_41359006	0.112972	Homez	ENSMUST00000163623.1|Nedd9|ENSMUSG00000021365.8|neural precursor cell expressed, developmentally down-regulated gene 9
mm10_v2_chrX_-_57392962_57392988	0.112088	Homez	ENSMUST00000114730.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr1_-_168431896_168431905	0.108636	Homez	ENSMUST00000176540.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr5_+_8422908_8422988	0.10397	Homez	ENSMUST00000170496.1|Slc25a40|ENSMUSG00000054099.5|solute carrier family 25, member 40
mm10_v2_chr5_-_25223153_25223153	0.102981	Homez	ENSMUST00000066954.1|E130116L18Rik|ENSMUSG00000054116.1|RIKEN cDNA E130116L18 gene
mm10_v2_chr11_-_48826500_48826500	0.101703	Homez	ENSMUST00000161192.2|Gm12184|ENSMUSG00000078154.2|predicted gene 12184
mm10_v2_chr17_-_35162969_35163040	0.0991075	Homez	ENSMUST00000174805.1|Prrc2a|ENSMUSG00000024393.8|proline-rich coiled-coil 2A
mm10_v2_chr8_+_19682268_19682270	0.0987556	Homez	ENSMUST00000153710.1|Gm6483|ENSMUSG00000087153.1|predicted gene 6483 	ENSMUST00000127799.1|Gm6483|ENSMUSG00000087153.1|predicted gene 6483
mm10_v2_chr11_-_40695203_40695223	0.0870385	Homez	ENSMUST00000101347.3|Mat2b|ENSMUSG00000042032.7|methionine adenosyltransferase II, beta
mm10_v2_chr2_-_3419019_3419061	0.0862169	Homez	ENSMUST00000115084.1|Meig1|ENSMUSG00000026650.9|meiosis expressed gene 1 	ENSMUST00000115083.1|Meig1|ENSMUSG00000026650.9|meiosis expressed gene 1
mm10_v2_chr2_-_93849921_93849980	0.0847193	Homez	ENSMUST00000111246.1|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm10_v2_chr10_+_88459569_88459670	0.0826813	Homez	ENSMUST00000020252.3|Sycp3|ENSMUSG00000020059.3|synaptonemal complex protein 3 	ENSMUST00000125612.1|Sycp3|ENSMUSG00000020059.3|synaptonemal complex protein 3
mm10_v2_chr2_-_121473993_121474067	0.0794939	Homez	ENSMUST00000056732.3|Mfap1b|ENSMUSG00000048222.3|microfibrillar-associated protein 1B
mm10_v2_chr11_-_76763550_76763582	0.0749668	Homez	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr1_-_166409773_166409863	0.0719063	Homez	ENSMUST00000135673.1|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000079972.6|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000169324.1|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000111411.2|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000128861.1|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain
mm10_v2_chr6_+_142413441_142413441	0.0703204	Homez	ENSMUST00000088263.4|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr7_+_127471009_127471036	0.0682809	Homez	ENSMUST00000133938.1|Prr14|ENSMUSG00000030822.9|proline rich 14
mm10_v2_chr5_+_24100578_24100669	0.0669963	Homez	ENSMUST00000030841.5|Klhl7|ENSMUSG00000028986.6|kelch-like 7 	ENSMUST00000163409.1|Klhl7|ENSMUSG00000028986.6|kelch-like 7
mm10_v2_chr13_+_90923122_90923170	0.0636348	Homez	ENSMUST00000051955.7|Rps23|ENSMUSG00000049517.7|ribosomal protein S23
mm10_v2_chr11_-_103017167_103017179	0.0595395	Homez	ENSMUST00000021313.2|Dcakd|ENSMUSG00000020935.2|dephospho-CoA kinase domain containing
mm10_v2_chr14_+_79451791_79451840	0.0565994	Homez	ENSMUST00000100359.1|Zbtbd6|ENSMUSG00000075502.1|kelch repeat and BTB (POZ) domain containing 6
mm10_v2_chr18_-_64516547_64516565	0.054593	Homez	ENSMUST00000025483.9|Nars|ENSMUSG00000024587.9|asparaginyl-tRNA synthetase
mm10_v2_chr19_-_46969474_46969555	0.0522699	Homez	ENSMUST00000086961.7|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr17_+_17316078_17316078	0.0515361	Homez	ENSMUST00000105311.3|Gm6712|ENSMUSG00000072761.4|predicted gene 6712
mm10_v2_chr2_+_80638798_80638834	0.0514949	Homez	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chr17_+_32993123_32993201	0.0508272	Homez	ENSMUST00000087666.4|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952 	ENSMUST00000157017.1|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952
mm10_v2_chr2_+_28468056_28468094	0.04627	Homez	ENSMUST00000038600.3|Mrps2|ENSMUSG00000035772.5|mitochondrial ribosomal protein S2
mm10_v2_chr15_+_76797628_76797628	0.0351856	Homez	ENSMUST00000165535.2|Gm17271|ENSMUSG00000090429.2|predicted gene, 17271
mm10_v2_chr4_+_152325831_152325876	0.0338784	Homez	ENSMUST00000103191.4|Rpl22|ENSMUSG00000028936.9|ribosomal protein L22 	ENSMUST00000139685.1|Rpl22|ENSMUSG00000028936.9|ribosomal protein L22
mm10_v2_chr17_+_12318862_12318905	0.0308848	Homez	ENSMUST00000181774.1|4732491K20Rik|ENSMUSG00000097350.1|RIKEN cDNA 4732491K20 gene
mm10_v2_chr2_+_180582712_180582742	0.0300769	Homez	ENSMUST00000029085.8|Mrgbp|ENSMUSG00000027569.9|MRG/MORF4L binding protein
mm10_v2_chr2_-_165400398_165400410	0.0281157	Homez	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr12_-_115964196_115964196	0.0276486	Homez	ENSMUST00000103550.2|Ighv1-83|ENSMUSG00000096466.1|immunoglobulin heavy variable 1-83
mm10_v2_chr2_-_119541513_119541513	0.0276382	Homez	ENSMUST00000171024.1|Exd1|ENSMUSG00000048647.3|exonuclease 3'-5' domain containing 1
mm10_v2_chr6_+_13069758_13069866	0.0275725	Homez	ENSMUST00000124234.1|Tmem106b|ENSMUSG00000029571.8|transmembrane protein 106B 	ENSMUST00000142211.1|Tmem106b|ENSMUSG00000029571.8|transmembrane protein 106B 	ENSMUST00000031556.7|Tmem106b|ENSMUSG00000029571.8|transmembrane protein 106B
mm10_v2_chr9_+_108339048_108339080	0.0260705	Homez	ENSMUST00000082429.5|Gpx1|ENSMUSG00000063856.6|glutathione peroxidase 1
mm10_v2_chr15_-_79658889_79658956	0.0233095	Homez	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr11_+_29526423_29526474	0.0214607	Homez	ENSMUST00000136351.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000020749.6|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000144321.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000093239.4|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2
mm10_v2_chr2_+_61711694_61711786	0.015917	Homez	ENSMUST00000028278.7|Psmd14|ENSMUSG00000026914.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
mm10_v2_chr12_+_55398775_55398894	0.0150826	Homez	ENSMUST00000021412.8|Psma6|ENSMUSG00000021024.8|proteasome (prosome, macropain) subunit, alpha type 6
mm10_v2_chr1_+_92906959_92907036	0.0129087	Homez	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
mm10_v2_chr5_-_140830430_140830453	0.00846347	Homez	ENSMUST00000000153.4|Gna12|ENSMUSG00000000149.6|guanine nucleotide binding protein, alpha 12
mm10_v2_chr2_-_93849679_93849836	0.00790661	Homez	ENSMUST00000068513.4|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000041593.8|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000130077.1|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm10_v2_chr6_+_142414012_142414012	0.00553639	Homez	ENSMUST00000141548.1|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr8_-_107588392_107588482	0.00397059	Homez	ENSMUST00000044106.4|Psmd7|ENSMUSG00000039067.4|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
