mm10_v2_chr3_+_129199919_129199943	3.53817	Hoxc9	ENSMUST00000029657.9|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2 	ENSMUST00000106382.4|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr3_+_129199878_129199913	2.75793	Hoxc9	ENSMUST00000174661.2|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr8_-_105471481_105471526	1.80466	Hoxc9	ENSMUST00000014990.6|Tppp3|ENSMUSG00000014846.6|tubulin polymerization-promoting protein family member 3
mm10_v2_chr1_+_187997835_187997882	1.79363	Hoxc9	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr1_+_187997821_187997834	1.74121	Hoxc9	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr2_+_102658640_102658669	1.65815	Hoxc9	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr2_-_38714491_38714542	1.58558	Hoxc9	ENSMUST00000028084.4|Nr5a1|ENSMUSG00000026751.8|nuclear receptor subfamily 5, group A, member 1
mm10_v2_chr3_+_129199960_129199975	1.58438	Hoxc9	ENSMUST00000173645.2|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr4_+_136143497_136143497	1.47618	Hoxc9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr10_-_92162753_92162765	1.35566	Hoxc9	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr7_-_139582790_139582808	1.23237	Hoxc9	ENSMUST00000106095.2|Nkx6-2|ENSMUSG00000041309.11|NK6 homeobox 2
mm10_v2_chr2_+_70474923_70474923	1.05406	Hoxc9	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr8_-_120228221_120228297	0.744338	Hoxc9	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr10_+_4710119_4710166	0.742244	Hoxc9	ENSMUST00000105588.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000105589.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr3_+_66985647_66985678	0.68684	Hoxc9	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr16_-_37384915_37384931	0.655177	Hoxc9	ENSMUST00000114787.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114782.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000023526.2|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114775.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr3_+_66985700_66985740	0.618301	Hoxc9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr13_-_25270076_25270094	0.586332	Hoxc9	ENSMUST00000057866.6|Nrsn1|ENSMUSG00000048978.7|neurensin 1
mm10_v2_chr1_-_45503282_45503282	0.53458	Hoxc9	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr13_-_78197815_78197930	0.510833	Hoxc9	ENSMUST00000127137.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr16_-_37384940_37384978	0.502812	Hoxc9	ENSMUST00000114781.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114780.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chrX_-_103186618_103186671	0.467839	Hoxc9	ENSMUST00000121720.1|Nap1l2|ENSMUSG00000082229.1|nucleosome assembly protein 1-like 2
mm10_v2_chr5_-_67427794_67427813	0.450258	Hoxc9	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr2_-_26516620_26516663	0.407936	Hoxc9	ENSMUST00000132820.1|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chrX_+_56609843_56609864	0.373984	Hoxc9	ENSMUST00000077741.5|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6 	ENSMUST00000114784.2|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr19_+_24875679_24875689	0.357945	Hoxc9	ENSMUST00000073080.5|Gm10053|ENSMUSG00000058927.5|predicted gene 10053
mm10_v2_chr7_-_30612731_30612744	0.351098	Hoxc9	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
mm10_v2_chr11_-_72215592_72215592	0.320355	Hoxc9	ENSMUST00000021157.8|Med31|ENSMUSG00000020801.8|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm10_v2_chrX_+_56609751_56609797	0.306847	Hoxc9	ENSMUST00000144068.1|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr5_-_44101668_44101745	0.262596	Hoxc9	ENSMUST00000087441.4|Prom1|ENSMUSG00000029086.9|prominin 1 	ENSMUST00000074113.6|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr3_+_66985680_66985692	0.252386	Hoxc9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr11_-_98022594_98022671	0.229073	Hoxc9	ENSMUST00000103144.3|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000017552.6|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000092736.4|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000107562.1|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit
mm10_v2_chr18_-_56975333_56975376	0.214329	Hoxc9	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr17_+_24426676_24426701	0.208624	Hoxc9	ENSMUST00000024946.5|Eci1|ENSMUSG00000024132.5|enoyl-Coenzyme A delta isomerase 1
mm10_v2_chr3_+_67892189_67892226	0.192962	Hoxc9	ENSMUST00000063263.3|Iqcj|ENSMUSG00000051777.4|IQ motif containing J
mm10_v2_chr5_+_67260696_67260711	0.171078	Hoxc9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr18_+_65582281_65582310	0.159049	Hoxc9	ENSMUST00000183319.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr1_+_66321708_66321719	0.157008	Hoxc9	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr5_+_67260565_67260692	0.136241	Hoxc9	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chrX_-_18461371_18461402	0.130956	Hoxc9	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr13_+_89540636_89540678	0.112357	Hoxc9	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr12_-_15816762_15816881	0.107997	Hoxc9	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr18_+_65582239_65582275	0.102856	Hoxc9	ENSMUST00000182684.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr2_-_128967725_128967725	0.0917986	Hoxc9	ENSMUST00000099385.2|Gm10762|ENSMUSG00000074807.2|predicted gene 10762
mm10_v2_chr10_-_88605017_88605152	0.0739911	Hoxc9	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr11_-_94242701_94242729	0.0728876	Hoxc9	ENSMUST00000061469.3|Wfikkn2|ENSMUSG00000044177.4|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm10_v2_chr15_+_8968389_8968426	0.0655044	Hoxc9	ENSMUST00000053308.9|Ranbp3l|ENSMUSG00000048424.9|RAN binding protein 3-like 	ENSMUST00000166524.1|Ranbp3l|ENSMUSG00000048424.9|RAN binding protein 3-like
mm10_v2_chr17_-_57000018_57000018	0.0616188	Hoxc9	ENSMUST00000002740.2|Pspn|ENSMUSG00000002664.2|persephin
mm10_v2_chr10_+_43524080_43524102	0.0542372	Hoxc9	ENSMUST00000057649.6|Gm9803|ENSMUSG00000045886.6|predicted gene 9803
mm10_v2_chr9_-_89705017_89705068	0.0536752	Hoxc9	ENSMUST00000058488.6|Tmed3|ENSMUSG00000032353.7|transmembrane emp24 domain containing 3
mm10_v2_chr18_+_65582390_65582613	0.0200318	Hoxc9	ENSMUST00000169679.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532 	ENSMUST00000183326.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr9_+_121710389_121710422	0.0130455	Hoxc9	ENSMUST00000035113.9|Deb1|ENSMUSG00000032526.10|differentially expressed in B16F10 1
mm10_v2_chr10_-_67912620_67912685	0.0124271	Hoxc9	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chr1_-_74284636_74284738	0.00707896	Hoxc9	ENSMUST00000178235.1|Aamp|ENSMUSG00000006299.7|angio-associated migratory protein 	ENSMUST00000006462.7|Aamp|ENSMUSG00000006299.7|angio-associated migratory protein
mm10_v2_chr9_-_7835255_7835255	0.00424083	Hoxc9	ENSMUST00000074246.6|Birc2|ENSMUSG00000057367.6|baculoviral IAP repeat-containing 2
