mm10_v2_chr15_-_8710409_8710498	1.86611	Hoxd1	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr15_-_8710734_8710764	1.79291	Hoxd1	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr4_+_105789869_105789869	1.76681	Hoxd1	ENSMUST00000184254.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr5_-_62766153_62766246	1.51001	Hoxd1	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_+_116067213_116067250	1.2938	Hoxd1	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr2_+_119047129_119047159	1.25329	Hoxd1	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr2_+_119047116_119047121	1.06876	Hoxd1	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr1_+_139454747_139454825	1.05126	Hoxd1	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr12_-_24493656_24493656	0.985142	Hoxd1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr13_-_105054895_105054930	0.980872	Hoxd1	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr5_-_77115145_77115156	0.964302	Hoxd1	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr5_-_63968867_63968905	0.79631	Hoxd1	ENSMUST00000154169.1|Rell1|ENSMUSG00000047881.8|RELT-like 1
mm10_v2_chr2_-_156392829_156392993	0.79249	Hoxd1	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr5_-_70842617_70842617	0.756732	Hoxd1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr19_+_23723279_23723279	0.74623	Hoxd1	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr14_+_62292475_62292589	0.741641	Hoxd1	ENSMUST00000166879.1|Rnaseh2b|ENSMUSG00000021932.7|ribonuclease H2, subunit B
mm10_v2_chr4_+_145585166_145585211	0.736869	Hoxd1	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr4_+_147132038_147132038	0.721249	Hoxd1	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr4_+_147492417_147492417	0.709281	Hoxd1	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chr6_-_57535422_57535447	0.694055	Hoxd1	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr4_+_146610961_146610961	0.665418	Hoxd1	ENSMUST00000130825.1|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr9_-_107872403_107872422	0.65629	Hoxd1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chrX_+_9885622_9885622	0.655479	Hoxd1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr2_+_150323702_150323702	0.64244	Hoxd1	ENSMUST00000133235.2|Gm10130|ENSMUSG00000095315.1|predicted gene 10130
mm10_v2_chr3_-_85722474_85722474	0.617227	Hoxd1	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr5_+_134932351_134932406	0.604577	Hoxd1	ENSMUST00000047196.7|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111221.2|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111219.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000068617.5|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111218.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000136246.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human)
mm10_v2_chr19_+_3323301_3323339	0.584174	Hoxd1	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr2_-_177267036_177267036	0.582847	Hoxd1	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr5_-_123012874_123012880	0.569779	Hoxd1	ENSMUST00000172729.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr2_-_116067391_116067444	0.56927	Hoxd1	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr13_-_67332525_67332553	0.566277	Hoxd1	ENSMUST00000168892.1|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595 	ENSMUST00000109735.2|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595
mm10_v2_chr1_-_33814516_33814576	0.565391	Hoxd1	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr3_+_40800778_40800786	0.564487	Hoxd1	ENSMUST00000169566.1|Plk4|ENSMUSG00000025758.5|polo-like kinase 4
mm10_v2_chr9_-_123851855_123851912	0.56001	Hoxd1	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chr3_-_41742471_41742548	0.557837	Hoxd1	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr2_-_20943413_20943424	0.556582	Hoxd1	ENSMUST00000140230.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr3_-_116712644_116712655	0.549445	Hoxd1	ENSMUST00000029569.2|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr2_+_3424123_3424207	0.542317	Hoxd1	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr12_+_72441852_72441866	0.536892	Hoxd1	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr12_+_72441933_72441970	0.535486	Hoxd1	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr4_+_145510759_145510791	0.529978	Hoxd1	ENSMUST00000105742.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225 	ENSMUST00000136309.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr5_-_106926245_106926321	0.489755	Hoxd1	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr12_+_16653470_16653486	0.478122	Hoxd1	ENSMUST00000111064.1|Ntsr2|ENSMUSG00000020591.10|neurotensin receptor 2
mm10_v2_chr17_+_88440711_88440741	0.471397	Hoxd1	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr5_+_107497762_107497802	0.470636	Hoxd1	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr2_-_45117349_45117395	0.446429	Hoxd1	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr4_-_14621805_14621819	0.441111	Hoxd1	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr1_+_65186727_65186750	0.430476	Hoxd1	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr15_+_25773985_25774042	0.421074	Hoxd1	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr16_-_55934845_55934868	0.394822	Hoxd1	ENSMUST00000121129.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000023270.7|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr16_-_16600533_16600576	0.39424	Hoxd1	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr11_-_87108656_87108719	0.3845	Hoxd1	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr5_+_140607334_140607352	0.384014	Hoxd1	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chrX_+_16619698_16619758	0.374716	Hoxd1	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr2_+_91257323_91257371	0.372848	Hoxd1	ENSMUST00000111349.2|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000131711.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr2_+_121956651_121956664	0.372093	Hoxd1	ENSMUST00000110574.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr6_-_124779686_124779742	0.366066	Hoxd1	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chrM_+_10167_10167	0.357626	Hoxd1	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr19_-_37330613_37330613	0.355439	Hoxd1	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr12_-_84617326_84617466	0.354587	Hoxd1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr4_-_147809788_147809840	0.353022	Hoxd1	ENSMUST00000105734.3|Gm13157|ENSMUSG00000078495.4|predicted gene 13157 	ENSMUST00000176201.1|Gm20707|ENSMUSG00000093594.1|predicted gene 20707
mm10_v2_chr14_+_26259109_26259109	0.339392	Hoxd1	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr4_+_103143052_103143071	0.324725	Hoxd1	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr10_+_75037066_75037100	0.323531	Hoxd1	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr16_-_55934797_55934840	0.314579	Hoxd1	ENSMUST00000122280.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000121703.2|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr18_+_31609512_31609512	0.31423	Hoxd1	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr11_+_109543694_109543754	0.312055	Hoxd1	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr9_-_85749308_85749356	0.304352	Hoxd1	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr4_+_102570065_102570124	0.303941	Hoxd1	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr1_-_33814591_33814600	0.302444	Hoxd1	ENSMUST00000019861.6|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr18_+_12741324_12741355	0.29764	Hoxd1	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr5_+_107497718_107497759	0.297395	Hoxd1	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr14_+_26119811_26119811	0.294192	Hoxd1	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr2_+_69897220_69897247	0.291041	Hoxd1	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr8_-_105966038_105966120	0.290797	Hoxd1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr6_+_34029421_34029456	0.282874	Hoxd1	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr2_+_121956411_121956480	0.282844	Hoxd1	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr15_+_98571004_98571026	0.274471	Hoxd1	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr12_-_98577940_98578046	0.264788	Hoxd1	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chrX_-_75578188_75578247	0.263073	Hoxd1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr2_+_69897255_69897303	0.257631	Hoxd1	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr7_+_79273201_79273270	0.257075	Hoxd1	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chrX_-_57338598_57338729	0.256647	Hoxd1	ENSMUST00000033468.4|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 	ENSMUST00000114736.1|Arhgef6|ENSMUSG00000031133.6|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm10_v2_chr1_-_127840290_127840290	0.256347	Hoxd1	ENSMUST00000061512.2|Map3k19|ENSMUSG00000051590.2|mitogen-activated protein kinase kinase kinase 19
mm10_v2_chrM_+_9870_9885	0.253171	Hoxd1	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr11_-_117826092_117826092	0.252432	Hoxd1	ENSMUST00000026661.3|Tk1|ENSMUSG00000025574.7|thymidine kinase 1
mm10_v2_chr2_+_170731807_170731920	0.249362	Hoxd1	ENSMUST00000029075.4|Dok5|ENSMUSG00000027560.4|docking protein 5
mm10_v2_chr14_-_75754475_75754563	0.247353	Hoxd1	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr16_+_34690548_34690616	0.245918	Hoxd1	ENSMUST00000023532.6|Ccdc14|ENSMUSG00000022833.6|coiled-coil domain containing 14
mm10_v2_chr13_+_83732438_83732566	0.237996	Hoxd1	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr9_+_72958785_72958850	0.230021	Hoxd1	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr15_-_37459327_37459380	0.224619	Hoxd1	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr12_+_52699297_52699411	0.219153	Hoxd1	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr10_-_8886033_8886076	0.218269	Hoxd1	ENSMUST00000015449.5|Sash1|ENSMUSG00000015305.5|SAM and SH3 domain containing 1
mm10_v2_chr19_-_32196393_32196428	0.217605	Hoxd1	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chrX_-_143933204_143933311	0.214045	Hoxd1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr9_-_55919605_55919605	0.213577	Hoxd1	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr8_-_122915987_122915987	0.212554	Hoxd1	ENSMUST00000098333.4|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr11_-_107337556_107337637	0.209794	Hoxd1	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr10_-_110000219_110000219	0.204435	Hoxd1	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr19_-_53944621_53944632	0.203866	Hoxd1	ENSMUST00000135402.2|Bbip1|ENSMUSG00000084957.2|BBSome interacting protein 1
mm10_v2_chr14_+_58893465_58893506	0.202095	Hoxd1	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr9_+_105395348_105395411	0.202035	Hoxd1	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr12_-_55014329_55014353	0.18723	Hoxd1	ENSMUST00000172875.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr17_-_32886083_32886083	0.185851	Hoxd1	ENSMUST00000178401.1|Zfp870|ENSMUSG00000095325.1|zinc finger protein 870
mm10_v2_chr13_+_24802020_24802020	0.153813	Hoxd1	ENSMUST00000155575.1|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr10_+_103367748_103367836	0.148381	Hoxd1	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chr10_-_120112946_120112987	0.142256	Hoxd1	ENSMUST00000020449.5|Helb|ENSMUSG00000020228.5|helicase (DNA) B
mm10_v2_chrX_-_160138375_160138435	0.140544	Hoxd1	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr11_+_87109221_87109239	0.136693	Hoxd1	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr4_+_134930898_134930997	0.132286	Hoxd1	ENSMUST00000030622.2|Syf2|ENSMUSG00000028821.2|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm10_v2_chr14_+_25980039_25980039	0.125158	Hoxd1	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr11_-_30649510_30649587	0.121551	Hoxd1	ENSMUST00000074613.3|Acyp2|ENSMUSG00000060923.5|acylphosphatase 2, muscle type
mm10_v2_chrX_-_143933089_143933142	0.117182	Hoxd1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr7_+_29816061_29816153	0.116948	Hoxd1	ENSMUST00000032796.6|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790 	ENSMUST00000178162.1|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790
mm10_v2_chr17_-_32822200_32822200	0.113241	Hoxd1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chrM_+_7759_7927	0.111385	Hoxd1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr1_-_185329331_185329401	0.111056	Hoxd1	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr10_-_117148474_117148510	0.108436	Hoxd1	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr1_-_24612700_24612700	0.108363	Hoxd1	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chrX_-_75843185_75843198	0.102749	Hoxd1	ENSMUST00000137192.1|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr9_-_105395237_105395289	0.102119	Hoxd1	ENSMUST00000140851.1|Nek11|ENSMUSG00000035032.5|NIMA (never in mitosis gene a)-related expressed kinase 11
mm10_v2_chr14_+_47298260_47298342	0.100433	Hoxd1	ENSMUST00000166743.1|Mapk1ip1l|ENSMUSG00000021840.10|mitogen-activated protein kinase 1 interacting protein 1-like
mm10_v2_chr18_-_60273267_60273267	0.0852601	Hoxd1	ENSMUST00000090260.4|Gm4841|ENSMUSG00000068606.5|predicted gene 4841
mm10_v2_chrX_-_75843063_75843139	0.0792495	Hoxd1	ENSMUST00000114057.1|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr13_-_74807913_74807989	0.0771453	Hoxd1	ENSMUST00000065629.4|Cast|ENSMUSG00000021585.8|calpastatin
mm10_v2_chr2_-_150255591_150255591	0.0767019	Hoxd1	ENSMUST00000063463.5|Gm21994|ENSMUSG00000074735.2|predicted gene 21994
mm10_v2_chr13_+_44121167_44121322	0.0756212	Hoxd1	ENSMUST00000163056.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083 	ENSMUST00000159595.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083
mm10_v2_chr1_-_158356258_158356313	0.0744006	Hoxd1	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr12_+_10390756_10390836	0.0650661	Hoxd1	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr14_+_4198185_4198185	0.0566331	Hoxd1	ENSMUST00000180184.1|Gm2974|ENSMUSG00000079391.4|predicted gene 2974
mm10_v2_chr6_+_149582012_149582012	0.0552417	Hoxd1	ENSMUST00000144085.2|Gm21814|ENSMUSG00000096299.1|predicted gene, 21814
mm10_v2_chr3_+_94837702_94837723	0.0473481	Hoxd1	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr2_-_172370506_172370540	0.0408154	Hoxd1	ENSMUST00000109139.1|Aurka|ENSMUSG00000027496.9|aurora kinase A 	ENSMUST00000028997.7|Aurka|ENSMUSG00000027496.9|aurora kinase A 	ENSMUST00000109140.3|Aurka|ENSMUSG00000027496.9|aurora kinase A
mm10_v2_chr11_+_60537978_60538074	0.0328388	Hoxd1	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr8_+_113635787_113635842	0.0303747	Hoxd1	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr9_-_15301555_15301607	0.0280773	Hoxd1	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr2_-_73580288_73580353	0.0251746	Hoxd1	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr18_-_24603464_24603530	0.0235052	Hoxd1	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr13_+_24801657_24801657	0.0213887	Hoxd1	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr8_+_113635550_113635597	0.0172816	Hoxd1	ENSMUST00000179926.1|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr2_+_32606946_32606973	0.0150404	Hoxd1	ENSMUST00000113290.1|St6galnac6|ENSMUSG00000026811.12|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm10_v2_chr1_-_172027269_172027313	0.012535	Hoxd1	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr8_-_54724474_54724504	0.00153827	Hoxd1	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
mm10_v2_chr7_+_130774069_130774185	0.00127354	Hoxd1	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr4_-_148152059_148152146	0.00100768	Hoxd1	ENSMUST00000056965.5|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000168503.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000152098.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6
