mm10_v2_chr2_-_36105271_36105434	1.36925	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr12_-_90969768_90969790	1.10892	Pax1_Pax9	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr2_+_178193075_178193099	0.637174	Pax1_Pax9	ENSMUST00000103065.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr18_+_69344503_69344530	0.388924	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr3_-_117360876_117360876	0.329063	Pax1_Pax9	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr15_-_84105662_84105754	0.300888	Pax1_Pax9	ENSMUST00000082365.5|Sult4a1|ENSMUSG00000018865.8|sulfotransferase family 4A, member 1
mm10_v2_chrX_+_86191764_86191782	0.284516	Pax1_Pax9	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr5_-_93206428_93206470	0.254895	Pax1_Pax9	ENSMUST00000144514.1|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr17_-_24205514_24205562	0.198531	Pax1_Pax9	ENSMUST00000097376.3|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000168410.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000167791.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000040474.7|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24
mm10_v2_chr19_-_7105729_7105729	0.153349	Pax1_Pax9	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr9_-_97111117_97111159	0.143128	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr17_+_27909337_27909409	0.134	Pax1_Pax9	ENSMUST00000114842.1|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000025058.7|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000088027.5|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1
mm10_v2_chr5_+_112255813_112255874	0.133668	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr2_+_84734050_84734107	0.121681	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr5_-_93206489_93206498	0.105097	Pax1_Pax9	ENSMUST00000058550.8|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr19_+_8840519_8840549	0.0897022	Pax1_Pax9	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr13_-_62777089_62777089	0.0884146	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr19_-_29047847_29047977	0.0882931	Pax1_Pax9	ENSMUST00000025696.4|Ak3|ENSMUSG00000024782.7|adenylate kinase 3
mm10_v2_chr11_+_83753689_83753722	0.0833001	Pax1_Pax9	ENSMUST00000001002.7|Heatr6|ENSMUSG00000000976.7|HEAT repeat containing 6
mm10_v2_chr5_-_129787175_129787259	0.0777708	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr9_+_21337828_21337859	0.0319338	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr2_-_33468493_33468572	0.0236211	Pax1_Pax9	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr8_+_94838321_94838429	0.0234341	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr18_-_10706688_10706771	0.0126799	Pax1_Pax9	ENSMUST00000002549.7|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117726.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117828.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3
