mm10_v2_chr13_+_94875600_94875611	3.98749	Rara	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr10_+_4611971_4612021	2.4985	Rara	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr4_-_46991842_46991916	1.56775	Rara	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr5_-_114273702_114273807	1.31962	Rara	ENSMUST00000144050.1|Foxn4|ENSMUSG00000042002.5|forkhead box N4 	ENSMUST00000044790.5|Foxn4|ENSMUSG00000042002.5|forkhead box N4
mm10_v2_chr2_+_169633517_169633676	1.27652	Rara	ENSMUST00000109157.1|Tshz2|ENSMUSG00000047907.10|teashirt zinc finger family member 2
mm10_v2_chr4_-_141599835_141600032	1.25396	Rara	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr11_+_98960412_98960485	1.19151	Rara	ENSMUST00000107473.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr5_+_135806859_135806902	1.14667	Rara	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr17_-_56133817_56133854	1.1317	Rara	ENSMUST00000167545.1|Sema6b|ENSMUSG00000001227.5|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm10_v2_chr1_+_134037490_134037530	1.03501	Rara	ENSMUST00000162779.1|Fmod|ENSMUSG00000041559.7|fibromodulin
mm10_v2_chr10_+_21993890_21993955	0.943802	Rara	ENSMUST00000092673.4|Sgk1|ENSMUSG00000019970.9|serum/glucocorticoid regulated kinase 1
mm10_v2_chr3_-_36475688_36475843	0.812778	Rara	ENSMUST00000029266.8|Anxa5|ENSMUSG00000027712.8|annexin A5
mm10_v2_chr14_-_16575456_16575501	0.805337	Rara	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chr6_+_30723541_30723552	0.733398	Rara	ENSMUST00000115127.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr17_+_34593388_34593417	0.645907	Rara	ENSMUST00000174532.1|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr4_-_152318458_152318654	0.625066	Rara	ENSMUST00000170820.1|Rnf207|ENSMUSG00000058498.6|ring finger protein 207 	ENSMUST00000076183.5|Rnf207|ENSMUSG00000058498.6|ring finger protein 207
mm10_v2_chr7_-_141429351_141429429	0.578039	Rara	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr7_-_141429433_141429491	0.574403	Rara	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr6_+_91157373_91157397	0.566166	Rara	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chr10_-_89257790_89257831	0.554844	Rara	ENSMUST00000045601.7|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr2_+_26319741_26319773	0.480335	Rara	ENSMUST00000066889.6|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr8_+_106150359_106150417	0.434008	Rara	ENSMUST00000034377.6|Pla2g15|ENSMUSG00000031903.6|phospholipase A2, group XV
mm10_v2_chr12_+_87026564_87026616	0.412414	Rara	ENSMUST00000110187.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c 	ENSMUST00000156162.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c
mm10_v2_chr15_+_82256023_82256130	0.410121	Rara	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr3_-_54915867_54915887	0.383362	Rara	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr11_+_4986824_4986894	0.379199	Rara	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr14_+_58070547_58070547	0.377328	Rara	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr12_-_108893197_108893215	0.368671	Rara	ENSMUST00000161154.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase 	ENSMUST00000161410.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr14_+_64588112_64588120	0.367975	Rara	ENSMUST00000181808.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr14_+_76488436_76488541	0.329413	Rara	ENSMUST00000101618.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr11_-_5915124_5915141	0.310831	Rara	ENSMUST00000109823.2|Gck|ENSMUSG00000041798.9|glucokinase 	ENSMUST00000109822.1|Gck|ENSMUSG00000041798.9|glucokinase
mm10_v2_chr10_+_79910856_79910856	0.298965	Rara	ENSMUST00000181321.1|Gm26602|ENSMUSG00000097854.1|predicted gene, 26602
mm10_v2_chr2_+_120977017_120977107	0.291699	Rara	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr7_+_45872772_45872857	0.289794	Rara	ENSMUST00000002855.5|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 	ENSMUST00000107719.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr4_+_141444654_141444714	0.287734	Rara	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr5_+_138255608_138255725	0.287236	Rara	ENSMUST00000062067.6|Lamtor4|ENSMUSG00000050552.7|late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
mm10_v2_chr1_-_175692624_175692776	0.281747	Rara	ENSMUST00000027809.7|Opn3|ENSMUSG00000026525.9|opsin 3
mm10_v2_chr7_+_45873127_45873187	0.253155	Rara	ENSMUST00000107718.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr11_+_94629741_94629834	0.253098	Rara	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr3_-_88058446_88058535	0.239621	Rara	ENSMUST00000029708.6|Apoa1bp|ENSMUSG00000028070.6|apolipoprotein A-I binding protein
mm10_v2_chr2_+_181365384_181365414	0.198568	Rara	ENSMUST00000108807.2|Zgpat|ENSMUSG00000027582.10|zinc finger, CCCH-type with G patch domain
mm10_v2_chr6_-_54972603_54972626	0.177556	Rara	ENSMUST00000060655.8|Nod1|ENSMUSG00000038058.8|nucleotide-binding oligomerization domain containing 1
mm10_v2_chr2_-_181365306_181365404	0.163719	Rara	ENSMUST00000108808.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000170190.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000127988.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1
mm10_v2_chr9_-_109074049_109074140	0.158757	Rara	ENSMUST00000161521.1|Atrip|ENSMUSG00000025646.2|ATR interacting protein 	ENSMUST00000045011.2|Atrip|ENSMUSG00000025646.2|ATR interacting protein
mm10_v2_chr8_-_94876269_94876321	0.149916	Rara	ENSMUST00000046461.7|Dok4|ENSMUSG00000040631.7|docking protein 4
mm10_v2_chr6_+_18848571_18848582	0.149126	Rara	ENSMUST00000056398.8|Naa38|ENSMUSG00000044155.8|N(alpha)-acetyltransferase 38, NatC auxiliary subunit
mm10_v2_chr7_+_120635176_120635251	0.139805	Rara	ENSMUST00000033176.5|Uqcrc2|ENSMUSG00000030884.5|ubiquinol cytochrome c reductase core protein 2
mm10_v2_chr7_-_44670820_44670862	0.138334	Rara	ENSMUST00000048102.7|Myh14|ENSMUSG00000030739.11|myosin, heavy polypeptide 14
mm10_v2_chr14_+_20674311_20674371	0.129415	Rara	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chrX_+_74254736_74254752	0.125807	Rara	ENSMUST00000096424.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr2_-_91070283_91070417	0.121362	Rara	ENSMUST00000111436.2|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000073575.5|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr3_+_79884576_79884597	0.117534	Rara	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr4_+_150853919_150854050	0.116036	Rara	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr5_-_105239533_105239533	0.102073	Rara	ENSMUST00000065588.6|Gbp10|ENSMUSG00000054588.8|guanylate-binding protein 10
mm10_v2_chr2_-_91070180_91070249	0.0867972	Rara	ENSMUST00000153367.1|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000079976.3|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr11_-_97700327_97700497	0.0671047	Rara	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr14_-_74947865_74947883	0.0566547	Rara	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr5_+_53267103_53267127	0.0549283	Rara	ENSMUST00000121042.1|Smim20|ENSMUSG00000061461.6|small integral membrane protein 20
mm10_v2_chr4_-_128609981_128610098	0.0464064	Rara	ENSMUST00000141040.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000147876.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000097877.2|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20
mm10_v2_chr2_-_34754364_34754561	0.0450708	Rara	ENSMUST00000142436.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000113099.3|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000028224.8|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chrX_+_74254782_74254872	0.0442346	Rara	ENSMUST00000119197.1|Emd|ENSMUSG00000001964.8|emerin 	ENSMUST00000088313.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr6_-_39810881_39810988	0.0226997	Rara	ENSMUST00000114797.1|Mrps33|ENSMUSG00000029918.8|mitochondrial ribosomal protein S33 	ENSMUST00000031978.8|Mrps33|ENSMUSG00000029918.8|mitochondrial ribosomal protein S33
mm10_v2_chr17_-_32388885_32389116	0.0215844	Rara	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr4_+_41348996_41349064	0.0141164	Rara	ENSMUST00000072866.5|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1 	ENSMUST00000108060.3|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1
mm10_v2_chr3_+_79884496_79884571	0.012768	Rara	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr8_-_119778380_119778431	0.0116264	Rara	ENSMUST00000049156.5|Tldc1|ENSMUSG00000034105.8|TBC/LysM associated domain containing 1
