mm10_v2_chrX_-_142966709_142966734	2.49955	Six3_Six1_Six2	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr18_+_56432116_56432163	2.44467	Six3_Six1_Six2	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chr1_+_139454747_139454825	2.17753	Six3_Six1_Six2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr6_-_23248264_23248390	1.42016	Six3_Six1_Six2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr9_+_98422961_98422961	1.22251	Six3_Six1_Six2	ENSMUST00000052068.9|Rbp1|ENSMUSG00000046402.9|retinol binding protein 1, cellular
mm10_v2_chr13_+_94083490_94083511	1.20449	Six3_Six1_Six2	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr9_+_65141154_65141198	1.20124	Six3_Six1_Six2	ENSMUST00000034961.4|Igdcc3|ENSMUSG00000032394.5|immunoglobulin superfamily, DCC subclass, member 3
mm10_v2_chr3_+_146220955_146221009	1.03924	Six3_Six1_Six2	ENSMUST00000039164.2|Lpar3|ENSMUSG00000036832.4|lysophosphatidic acid receptor 3
mm10_v2_chr15_-_82244716_82244755	0.996254	Six3_Six1_Six2	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr7_-_80115294_80115392	0.905342	Six3_Six1_Six2	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr5_+_140607334_140607352	0.902866	Six3_Six1_Six2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr15_+_98571004_98571026	0.897693	Six3_Six1_Six2	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr10_-_128180265_128180307	0.802994	Six3_Six1_Six2	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr15_-_75894474_75894529	0.707518	Six3_Six1_Six2	ENSMUST00000023237.6|Naprt1|ENSMUSG00000022574.6|nicotinate phosphoribosyltransferase domain containing 1
mm10_v2_chr3_-_37724321_37724490	0.661855	Six3_Six1_Six2	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr9_+_104002546_104002776	0.639096	Six3_Six1_Six2	ENSMUST00000035167.8|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent) 	ENSMUST00000117054.1|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent)
mm10_v2_chrX_+_169685191_169685250	0.609834	Six3_Six1_Six2	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr1_+_136467958_136467958	0.471533	Six3_Six1_Six2	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chr8_-_4275886_4275915	0.469626	Six3_Six1_Six2	ENSMUST00000003029.7|Timm44|ENSMUSG00000002949.8|translocase of inner mitochondrial membrane 44
mm10_v2_chr3_+_94398517_94398538	0.453743	Six3_Six1_Six2	ENSMUST00000050975.3|Lingo4|ENSMUSG00000044505.3|leucine rich repeat and Ig domain containing 4
mm10_v2_chr5_+_21543525_21543590	0.430575	Six3_Six1_Six2	ENSMUST00000035651.4|Lrrc17|ENSMUSG00000039883.4|leucine rich repeat containing 17
mm10_v2_chr13_+_104229366_104229388	0.429943	Six3_Six1_Six2	ENSMUST00000022227.6|Cenpk|ENSMUSG00000021714.8|centromere protein K
mm10_v2_chr10_+_24595623_24595780	0.392115	Six3_Six1_Six2	ENSMUST00000176228.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor 	ENSMUST00000129142.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor
mm10_v2_chr17_+_35241838_35241870	0.381906	Six3_Six1_Six2	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr9_-_121839460_121839465	0.374853	Six3_Six1_Six2	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chrX_-_74373260_74373349	0.369483	Six3_Six1_Six2	ENSMUST00000073067.4|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3 	ENSMUST00000037967.5|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr9_+_72958785_72958850	0.359437	Six3_Six1_Six2	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr7_-_126676357_126676383	0.346332	Six3_Six1_Six2	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr17_+_35241746_35241778	0.342798	Six3_Six1_Six2	ENSMUST00000068056.5|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENSMUST00000174757.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chrX_-_74373218_74373249	0.306726	Six3_Six1_Six2	ENSMUST00000178691.1|Ubl4|ENSMUSG00000015290.9|ubiquitin-like 4 	ENSMUST00000114146.1|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr11_-_101987004_101987013	0.288892	Six3_Six1_Six2	ENSMUST00000107173.2|Dusp3|ENSMUSG00000003518.7|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related) 	ENSMUST00000107172.1|Dusp3|ENSMUSG00000003518.7|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm10_v2_chr7_+_30231884_30231948	0.287436	Six3_Six1_Six2	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr10_+_100488289_100488289	0.277977	Six3_Six1_Six2	ENSMUST00000164751.1|Cep290|ENSMUSG00000019971.9|centrosomal protein 290
mm10_v2_chr19_-_55315980_55316038	0.253127	Six3_Six1_Six2	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr15_-_76206309_76206357	0.238756	Six3_Six1_Six2	ENSMUST00000073418.6|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000171634.1|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000076442.5|Plec|ENSMUSG00000022565.9|plectin
mm10_v2_chr1_-_118982551_118982606	0.227946	Six3_Six1_Six2	ENSMUST00000159678.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr4_+_133176336_133176371	0.22139	Six3_Six1_Six2	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr11_-_69695521_69695713	0.214824	Six3_Six1_Six2	ENSMUST00000181261.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chr7_-_101903783_101903786	0.212825	Six3_Six1_Six2	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr4_+_11758147_11758220	0.208168	Six3_Six1_Six2	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr2_-_13271268_13271348	0.199701	Six3_Six1_Six2	ENSMUST00000137670.1|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1 	ENSMUST00000114791.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr12_+_30584429_30584466	0.182203	Six3_Six1_Six2	ENSMUST00000057151.8|Tmem18|ENSMUSG00000043061.9|transmembrane protein 18
mm10_v2_chr5_-_62765618_62765656	0.18102	Six3_Six1_Six2	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_-_13271419_13271437	0.179845	Six3_Six1_Six2	ENSMUST00000028059.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr7_+_123123870_123123901	0.174936	Six3_Six1_Six2	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr4_-_43030440_43030593	0.172863	Six3_Six1_Six2	ENSMUST00000135660.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr8_+_69832633_69832712	0.15146	Six3_Six1_Six2	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr12_+_84773262_84773319	0.146103	Six3_Six1_Six2	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr3_+_88207308_88207328	0.141251	Six3_Six1_Six2	ENSMUST00000180582.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764
mm10_v2_chr10_-_78487842_78487842	0.119738	Six3_Six1_Six2	ENSMUST00000069431.4|Gm9978|ENSMUSG00000055704.4|predicted gene 9978
mm10_v2_chr13_-_74292297_74292331	0.107207	Six3_Six1_Six2	ENSMUST00000109640.1|Ahrr|ENSMUSG00000021575.9|aryl-hydrocarbon receptor repressor 	ENSMUST00000022059.7|Ahrr|ENSMUSG00000021575.9|aryl-hydrocarbon receptor repressor
mm10_v2_chr8_-_86885222_86885282	0.103909	Six3_Six1_Six2	ENSMUST00000034074.7|N4bp1|ENSMUSG00000031652.10|NEDD4 binding protein 1
mm10_v2_chr8_+_71951038_71951130	0.101552	Six3_Six1_Six2	ENSMUST00000131237.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000136516.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000109997.2|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000132848.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961
mm10_v2_chr5_+_104046869_104046899	0.100045	Six3_Six1_Six2	ENSMUST00000031250.7|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chrX_-_111536325_111536342	0.0966571	Six3_Six1_Six2	ENSMUST00000156639.1|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6
mm10_v2_chr14_+_57798156_57798180	0.0949054	Six3_Six1_Six2	ENSMUST00000128764.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr17_-_53539411_53539459	0.0923036	Six3_Six1_Six2	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr7_-_141168671_141168936	0.0889443	Six3_Six1_Six2	ENSMUST00000106033.3|Rnh1|ENSMUSG00000038650.8|ribonuclease/angiogenin inhibitor 1
mm10_v2_chr6_+_38534823_38534872	0.0824578	Six3_Six1_Six2	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chr2_+_158028481_158028539	0.0813626	Six3_Six1_Six2	ENSMUST00000103123.3|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chr2_+_117249725_117249754	0.0708964	Six3_Six1_Six2	ENSMUST00000028825.4|Fam98b|ENSMUSG00000027349.5|family with sequence similarity 98, member B
mm10_v2_chr16_-_11203259_11203331	0.0682229	Six3_Six1_Six2	ENSMUST00000119953.1|Rsl1d1|ENSMUSG00000005846.11|ribosomal L1 domain containing 1
mm10_v2_chr19_+_8764934_8765034	0.0564554	Six3_Six1_Six2	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr14_+_57798182_57798218	0.047117	Six3_Six1_Six2	ENSMUST00000111269.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr11_-_99230998_99231019	0.0435986	Six3_Six1_Six2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chrY_-_6237995_6237995	0.0197842	Six3_Six1_Six2	ENSMUST00000177612.1|Gm21746|ENSMUSG00000094346.1|predicted gene, 21746
mm10_v2_chr6_-_115675871_115675964	0.0195878	Six3_Six1_Six2	ENSMUST00000112949.1|Raf1|ENSMUSG00000000441.11|v-raf-leukemia viral oncogene 1
mm10_v2_chr17_+_40811089_40811133	0.013257	Six3_Six1_Six2	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr8_+_57455898_57455923	0.00386082	Six3_Six1_Six2	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr7_-_126676428_126676439	0.00313869	Six3_Six1_Six2	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
