mm10_v2_chr12_-_31713873_31713947	6.01378	Sox2	ENSMUST00000057783.4|Gpr22|ENSMUSG00000044067.6|G protein-coupled receptor 22 	ENSMUST00000174480.2|Gpr22|ENSMUSG00000044067.6|G protein-coupled receptor 22 	ENSMUST00000176710.1|Gpr22|ENSMUSG00000044067.6|G protein-coupled receptor 22
mm10_v2_chr4_+_115057683_115057811	5.73181	Sox2	ENSMUST00000161601.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr7_+_99466004_99466032	5.60956	Sox2	ENSMUST00000037359.2|Klhl35|ENSMUSG00000035298.2|kelch-like 35
mm10_v2_chr2_-_156312470_156312704	5.43653	Sox2	ENSMUST00000079125.6|Scand1|ENSMUSG00000046229.9|SCAN domain-containing 1
mm10_v2_chrX_-_143933089_143933142	4.46897	Sox2	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr4_-_148130678_148130706	4.41	Sox2	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chrX_-_143933204_143933311	4.30422	Sox2	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr10_+_80150448_80150482	4.23554	Sox2	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr2_-_30474199_30474222	4.1056	Sox2	ENSMUST00000065134.2|Ier5l|ENSMUSG00000089762.2|immediate early response 5-like
mm10_v2_chr10_+_80300997_80301050	4.09129	Sox2	ENSMUST00000140828.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2 	ENSMUST00000138909.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr5_-_22344690_22344710	4.07116	Sox2	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr15_-_99705490_99705490	4.03927	Sox2	ENSMUST00000163472.2|Gm17349|ENSMUSG00000091604.2|predicted gene, 17349
mm10_v2_chr17_-_79355082_79355103	4.02073	Sox2	ENSMUST00000068958.7|Cdc42ep3|ENSMUSG00000036533.8|CDC42 effector protein (Rho GTPase binding) 3
mm10_v2_chr4_+_43406435_43406615	3.84955	Sox2	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr7_-_47132698_47132717	3.82222	Sox2	ENSMUST00000033142.5|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chr5_+_33983437_33983529	3.58848	Sox2	ENSMUST00000114384.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000094869.5|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000114383.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr18_+_37484955_37485028	3.55506	Sox2	ENSMUST00000053856.4|Pcdhb17|ENSMUSG00000046387.4|protocadherin beta 17
mm10_v2_chr8_-_33747724_33747781	3.51817	Sox2	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr2_+_146221921_146221921	3.51772	Sox2	ENSMUST00000089257.4|Insm1|ENSMUSG00000068154.4|insulinoma-associated 1
mm10_v2_chr10_-_122047293_122047322	3.45587	Sox2	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chr11_+_58948890_58948920	3.40744	Sox2	ENSMUST00000078267.3|Hist3h2ba|ENSMUSG00000056895.3|histone cluster 3, H2ba
mm10_v2_chr5_+_111417263_111417442	3.40336	Sox2	ENSMUST00000094463.4|Mn1|ENSMUSG00000070576.4|meningioma 1
mm10_v2_chr17_+_20570362_20570362	3.37868	Sox2	ENSMUST00000095633.3|Gm5145|ENSMUSG00000071273.3|predicted pseudogene 5145
mm10_v2_chr1_+_136131382_136131404	3.32294	Sox2	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr5_+_33983534_33983548	3.31157	Sox2	ENSMUST00000114382.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr8_-_109251698_109251728	3.29115	Sox2	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr8_+_92357787_92357801	3.24676	Sox2	ENSMUST00000034184.10|Irx5|ENSMUSG00000031737.10|Iroquois related homeobox 5 (Drosophila)
mm10_v2_chr6_+_51432663_51432674	3.2376	Sox2	ENSMUST00000005103.5|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr3_-_50443603_50443615	3.17898	Sox2	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr7_-_49636847_49636851	3.15576	Sox2	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr2_+_155381808_155381884	3.13525	Sox2	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr1_-_138842429_138842457	3.13153	Sox2	ENSMUST00000112026.2|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9 	ENSMUST00000019374.7|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9
mm10_v2_chr1_+_34579693_34579751	3.0899	Sox2	ENSMUST00000052670.8|Amer3|ENSMUSG00000045174.8|APC membrane recruitment 3
mm10_v2_chr7_-_25005895_25005937	3.02364	Sox2	ENSMUST00000102858.3|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENSMUST00000080882.6|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm10_v2_chr11_+_104231573_104231584	2.99495	Sox2	ENSMUST00000132977.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000132245.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000100347.4|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr4_-_20778527_20778593	2.95968	Sox2	ENSMUST00000119374.1|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr4_-_129121889_129122063	2.95785	Sox2	ENSMUST00000139450.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000125931.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000116444.2|Hpca|ENSMUSG00000028785.6|hippocalcin
mm10_v2_chr2_-_160367057_160367073	2.9455	Sox2	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr1_-_87156127_87156165	2.92312	Sox2	ENSMUST00000160810.1|Ecel1|ENSMUSG00000026247.7|endothelin converting enzyme-like 1
mm10_v2_chr8_-_84237042_84237061	2.92176	Sox2	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr3_-_123690806_123690847	2.91952	Sox2	ENSMUST00000154668.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr10_-_29144194_29144194	2.87413	Sox2	ENSMUST00000070359.2|Gm9996|ENSMUSG00000056316.2|predicted gene 9996
mm10_v2_chr8_+_70697739_70697739	2.86763	Sox2	ENSMUST00000095267.4|Jund|ENSMUSG00000071076.5|Jun proto-oncogene related gene d
mm10_v2_chr4_+_53779694_53779706	2.85957	Sox2	ENSMUST00000030124.3|Tal2|ENSMUSG00000028417.3|T cell acute lymphocytic leukemia 2
mm10_v2_chr6_-_88875035_88875053	2.83829	Sox2	ENSMUST00000145944.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr11_-_98329641_98329654	2.8264	Sox2	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr10_-_84440591_84440604	2.8022	Sox2	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr5_-_34187670_34187749	2.78612	Sox2	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr3_+_103576081_103576147	2.77704	Sox2	ENSMUST00000183637.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000117221.2|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000118117.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000118563.2|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr8_-_83166170_83166170	2.72431	Sox2	ENSMUST00000098605.2|Gm10645|ENSMUSG00000074228.2|predicted gene 10645
mm10_v2_chr6_+_51432678_51432784	2.71514	Sox2	ENSMUST00000160133.1|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr12_+_71309876_71309984	2.68589	Sox2	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr7_-_121035096_121035096	2.6524	Sox2	ENSMUST00000065740.2|Gm9905|ENSMUSG00000053358.2|predicted gene 9905
mm10_v2_chr11_+_104231390_104231453	2.65235	Sox2	ENSMUST00000106992.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr9_+_102718424_102718490	2.64648	Sox2	ENSMUST00000156485.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000145937.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000134483.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr4_+_48585193_48585215	2.63776	Sox2	ENSMUST00000107703.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr15_-_75905349_75905388	2.61316	Sox2	ENSMUST00000127550.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr8_-_122699066_122699119	2.61298	Sox2	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr6_-_13839916_13839942	2.60722	Sox2	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr2_+_156312299_156312426	2.58753	Sox2	ENSMUST00000037096.2|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2
mm10_v2_chr18_-_43393346_43393381	2.5466	Sox2	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chrX_-_53608979_53608979	2.539	Sox2	ENSMUST00000123034.1|Gm14597|ENSMUSG00000079593.3|predicted gene 14597
mm10_v2_chr5_+_88583527_88583590	2.52527	Sox2	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr10_+_43579161_43579178	2.52228	Sox2	ENSMUST00000058714.8|Cd24a|ENSMUSG00000047139.8|CD24a antigen
mm10_v2_chr5_-_136244865_136244908	2.51615	Sox2	ENSMUST00000005188.9|Sh2b2|ENSMUSG00000005057.9|SH2B adaptor protein 2
mm10_v2_chr6_+_17065129_17065233	2.50451	Sox2	ENSMUST00000115467.4|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000154266.2|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000076654.7|Tes|ENSMUSG00000029552.13|testis derived transcript
mm10_v2_chr1_+_19212054_19212106	2.49443	Sox2	ENSMUST00000064976.4|Tfap2b|ENSMUSG00000025927.7|transcription factor AP-2 beta
mm10_v2_chr13_-_54749627_54749697	2.48336	Sox2	ENSMUST00000099506.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr19_+_55895508_55895511	2.48044	Sox2	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr5_-_114091358_114091404	2.47091	Sox2	ENSMUST00000150106.1|Svop|ENSMUSG00000042078.8|SV2 related protein
mm10_v2_chr7_+_29303938_29303951	2.46738	Sox2	ENSMUST00000108231.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr8_-_69184177_69184240	2.45656	Sox2	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr5_+_37245792_37245883	2.40919	Sox2	ENSMUST00000031004.7|Crmp1|ENSMUSG00000029121.9|collapsin response mediator protein 1
mm10_v2_chr4_+_48585135_48585187	2.39637	Sox2	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr6_-_88874597_88874796	2.39114	Sox2	ENSMUST00000061262.4|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2 	ENSMUST00000140455.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2 	ENSMUST00000145780.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr10_-_81025406_81025411	2.38988	Sox2	ENSMUST00000055125.4|Diras1|ENSMUSG00000043670.4|DIRAS family, GTP-binding RAS-like 1
mm10_v2_chrX_-_167209149_167209164	2.38911	Sox2	ENSMUST00000112176.1|Tmsb4x|ENSMUSG00000049775.10|thymosin, beta 4, X chromosome
mm10_v2_chr5_-_134552414_134552444	2.38122	Sox2	ENSMUST00000100647.2|Clip2|ENSMUSG00000063146.5|CAP-GLY domain containing linker protein 2 	ENSMUST00000036999.6|Clip2|ENSMUSG00000063146.5|CAP-GLY domain containing linker protein 2
mm10_v2_chr2_+_124610573_124610613	2.36552	Sox2	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr7_+_29303958_29303983	2.36316	Sox2	ENSMUST00000049977.6|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr15_-_58214882_58214926	2.35928	Sox2	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr7_+_16944645_16944720	2.34584	Sox2	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr11_+_104231515_104231528	2.32431	Sox2	ENSMUST00000106993.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr9_+_59617284_59617301	2.3169	Sox2	ENSMUST00000026267.8|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6 	ENSMUST00000050483.7|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6
mm10_v2_chr4_+_48585276_48585365	2.3102	Sox2	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr7_+_64501949_64502048	2.30287	Sox2	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr10_+_29143996_29144126	2.29902	Sox2	ENSMUST00000092629.2|Soga3|ENSMUSG00000038916.6|SOGA family member 3
mm10_v2_chr7_+_99381495_99381555	2.28352	Sox2	ENSMUST00000037528.8|Gdpd5|ENSMUSG00000035314.8|glycerophosphodiester phosphodiesterase domain containing 5
mm10_v2_chr7_-_47133395_47133437	2.28129	Sox2	ENSMUST00000107617.1|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chrX_+_48519245_48519285	2.26965	Sox2	ENSMUST00000033430.2|Rab33a|ENSMUSG00000031104.2|RAB33A, member of RAS oncogene family
mm10_v2_chr13_-_55488038_55488111	2.26756	Sox2	ENSMUST00000109921.2|Dbn1|ENSMUSG00000034675.11|drebrin 1 	ENSMUST00000109923.2|Dbn1|ENSMUSG00000034675.11|drebrin 1 	ENSMUST00000021950.8|Dbn1|ENSMUSG00000034675.11|drebrin 1
mm10_v2_chr11_+_104231465_104231507	2.24978	Sox2	ENSMUST00000145227.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chrX_+_134295225_134295225	2.24856	Sox2	ENSMUST00000037687.7|Tmem35|ENSMUSG00000033578.7|transmembrane protein 35
mm10_v2_chr8_+_124793061_124793092	2.23529	Sox2	ENSMUST00000041106.7|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr7_+_24507099_24507110	2.22605	Sox2	ENSMUST00000177228.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr11_+_80477015_80477085	2.21631	Sox2	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr2_+_163438455_163438536	2.2104	Sox2	ENSMUST00000109420.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000109421.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000018087.6|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000137070.1|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1
mm10_v2_chr1_+_6487231_6487338	2.20776	Sox2	ENSMUST00000140079.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131494.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr19_+_44992127_44992136	2.19881	Sox2	ENSMUST00000179305.1|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr6_-_72958097_72958302	2.19358	Sox2	ENSMUST00000114049.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr17_-_25433263_25433307	2.18951	Sox2	ENSMUST00000159623.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr8_+_124793013_124793056	2.18133	Sox2	ENSMUST00000167588.1|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr7_-_74013676_74013699	2.17735	Sox2	ENSMUST00000026896.4|St8sia2|ENSMUSG00000025789.4|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm10_v2_chr8_+_123411424_123411562	2.16944	Sox2	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr16_-_18629864_18629951	2.16765	Sox2	ENSMUST00000096987.5|Sept5|ENSMUSG00000072214.6|septin 5
mm10_v2_chr7_-_83884289_83884341	2.16404	Sox2	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr4_-_32923455_32923530	2.15702	Sox2	ENSMUST00000035719.4|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084749.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr4_+_115057410_115057438	2.15016	Sox2	ENSMUST00000136946.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr1_-_180330550_180330550	2.14247	Sox2	ENSMUST00000050581.3|Gm5069|ENSMUSG00000055676.3|predicted pseudogene 5069
mm10_v2_chr4_-_149676043_149676065	2.14146	Sox2	ENSMUST00000118704.1|Pik3cd|ENSMUSG00000039936.12|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm10_v2_chr12_+_86361112_86361131	2.13105	Sox2	ENSMUST00000116402.3|Esrrb|ENSMUSG00000021255.11|estrogen related receptor, beta
mm10_v2_chr13_-_21501418_21501418	2.12516	Sox2	ENSMUST00000044043.2|Gm11273|ENSMUSG00000079941.1|predicted gene 11273
mm10_v2_chr2_-_147085445_147085483	2.12428	Sox2	ENSMUST00000067020.2|Nkx2-4|ENSMUSG00000054160.2|NK2 homeobox 4
mm10_v2_chr9_+_58554799_58554799	2.12406	Sox2	ENSMUST00000098676.2|Gm10657|ENSMUSG00000074273.2|predicted gene 10657
mm10_v2_chr2_+_32621750_32621774	2.11239	Sox2	ENSMUST00000113278.2|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr8_+_85432686_85432686	2.10898	Sox2	ENSMUST00000180883.1|1700051O22Rik|ENSMUSG00000096933.1|RIKEN cDNA 1700051O22 Gene
mm10_v2_chr8_-_119840522_119840579	2.08509	Sox2	ENSMUST00000168698.1|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium) 	ENSMUST00000034285.6|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium)
mm10_v2_chr10_+_127165118_127165225	2.08316	Sox2	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr16_+_17070220_17070239	2.07061	Sox2	ENSMUST00000141959.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr2_+_32625431_32625442	2.05907	Sox2	ENSMUST00000113277.1|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr7_-_132317198_132317228	2.05527	Sox2	ENSMUST00000080215.5|Chst15|ENSMUSG00000030930.7|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm10_v2_chr3_+_102010138_102010171	2.05227	Sox2	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr1_+_133246092_133246099	2.05051	Sox2	ENSMUST00000038295.8|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6 	ENSMUST00000105082.2|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6
mm10_v2_chr13_-_22035589_22035643	2.04697	Sox2	ENSMUST00000091742.4|Hist1h2ah|ENSMUSG00000069302.4|histone cluster 1, H2ah
mm10_v2_chr12_-_72236692_72236724	2.04218	Sox2	ENSMUST00000021497.9|Rtn1|ENSMUSG00000021087.11|reticulon 1 	ENSMUST00000137990.1|Rtn1|ENSMUSG00000021087.11|reticulon 1
mm10_v2_chr1_+_66322102_66322119	2.03376	Sox2	ENSMUST00000123647.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr13_-_54749849_54749893	2.0256	Sox2	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr9_+_108826320_108826320	2.01295	Sox2	ENSMUST00000024238.5|Celsr3|ENSMUSG00000023473.6|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
mm10_v2_chr16_+_13986596_13986674	2.00605	Sox2	ENSMUST00000056521.5|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000118412.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000131608.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene
mm10_v2_chr4_-_148287927_148287965	1.99956	Sox2	ENSMUST00000047720.8|Ptchd2|ENSMUSG00000041544.11|patched domain containing 2
mm10_v2_chr2_-_151973387_151973399	1.99423	Sox2	ENSMUST00000109863.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr8_+_70863127_70863127	1.99216	Sox2	ENSMUST00000050921.2|A230052G05Rik|ENSMUSG00000020887.3|RIKEN cDNA A230052G05 gene
mm10_v2_chr11_+_67586520_67586546	1.98505	Sox2	ENSMUST00000108682.2|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr3_-_95228636_95228719	1.9836	Sox2	ENSMUST00000065482.5|Mllt11|ENSMUSG00000053192.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm10_v2_chr3_+_153973436_153973520	1.97718	Sox2	ENSMUST00000089948.5|Slc44a5|ENSMUSG00000028360.9|solute carrier family 44, member 5
mm10_v2_chr5_+_75574916_75575001	1.96965	Sox2	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr5_+_26904682_26904710	1.96653	Sox2	ENSMUST00000120555.1|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr15_-_75566811_75566896	1.96482	Sox2	ENSMUST00000065417.8|Ly6h|ENSMUSG00000022577.10|lymphocyte antigen 6 complex, locus H
mm10_v2_chr2_+_28513105_28513126	1.96382	Sox2	ENSMUST00000135803.1|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr11_+_116918844_116918888	1.96246	Sox2	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr3_+_95160449_95160505	1.95948	Sox2	ENSMUST00000090823.1|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENSMUST00000090821.3|Sema6c|ENSMUSG00000038777.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm10_v2_chr6_+_54681687_54681783	1.94735	Sox2	ENSMUST00000046276.6|2410066E13Rik|ENSMUSG00000038065.7|RIKEN cDNA 2410066E13 gene
mm10_v2_chr11_+_24076529_24076563	1.94443	Sox2	ENSMUST00000148087.1|Gm12063|ENSMUSG00000085167.1|predicted gene 12063
mm10_v2_chr6_+_39873271_39873271	1.94405	Sox2	ENSMUST00000180886.1|Tmem178b|ENSMUSG00000057716.6|transmembrane protein 178B
mm10_v2_chr3_+_88621436_88621555	1.94329	Sox2	ENSMUST00000170653.2|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000177303.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr17_-_25433775_25433790	1.93523	Sox2	ENSMUST00000159610.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000159048.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000078496.5|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr11_-_76468396_76468473	1.92669	Sox2	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr19_-_46327121_46327156	1.91763	Sox2	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr7_-_143460989_143461050	1.91684	Sox2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr6_+_115675983_115676004	1.91014	Sox2	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr19_-_5729618_5729700	1.90955	Sox2	ENSMUST00000116558.2|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000099955.3|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000161368.1|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B
mm10_v2_chr14_-_79771305_79771318	1.90802	Sox2	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr8_+_123332676_123332740	1.90293	Sox2	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr7_+_29309429_29309513	1.89837	Sox2	ENSMUST00000137848.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr2_+_9882622_9882646	1.89482	Sox2	ENSMUST00000114919.1|4930412O13Rik|ENSMUSG00000025783.2|RIKEN cDNA 4930412O13 gene
mm10_v2_chr18_+_36939178_36939318	1.88919	Sox2	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr11_-_78497734_78497793	1.88773	Sox2	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr2_+_158666690_158666740	1.87938	Sox2	ENSMUST00000103116.3|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr3_-_108402589_108402589	1.87316	Sox2	ENSMUST00000147565.1|Celsr2|ENSMUSG00000068740.7|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm10_v2_chr17_-_56476462_56476483	1.87061	Sox2	ENSMUST00000067538.5|Ptprs|ENSMUSG00000013236.10|protein tyrosine phosphatase, receptor type, S
mm10_v2_chr12_+_73997749_73997817	1.86741	Sox2	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr7_+_100493337_100493370	1.8646	Sox2	ENSMUST00000126534.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr3_+_109573907_109573990	1.85203	Sox2	ENSMUST00000106576.2|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr2_+_155382186_155382274	1.83746	Sox2	ENSMUST00000134218.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr11_+_69846610_69846659	1.83454	Sox2	ENSMUST00000152566.1|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3 	ENSMUST00000108633.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr5_-_38159457_38159491	1.83001	Sox2	ENSMUST00000031009.4|Nsg1|ENSMUSG00000029126.4|neuron specific gene family member 1
mm10_v2_chr2_+_37516618_37516634	1.82492	Sox2	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr1_-_6215292_6215292	1.81105	Sox2	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr17_+_52602700_52602717	1.80911	Sox2	ENSMUST00000039366.10|Kcnh8|ENSMUSG00000035580.10|potassium voltage-gated channel, subfamily H (eag-related), member 8
mm10_v2_chr15_-_79742518_79742562	1.80007	Sox2	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr11_+_95010277_95010293	1.77977	Sox2	ENSMUST00000124735.1|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr2_+_181763315_181763335	1.77866	Sox2	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr6_-_83121385_83121559	1.77707	Sox2	ENSMUST00000146328.1|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1 	ENSMUST00000113936.3|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1 	ENSMUST00000032111.4|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1
mm10_v2_chr5_-_28467093_28467109	1.77222	Sox2	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr11_-_78497458_78497539	1.76173	Sox2	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr17_-_35910032_35910076	1.76087	Sox2	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr1_+_6734827_6734874	1.75448	Sox2	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr18_-_23038656_23038676	1.75238	Sox2	ENSMUST00000081423.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr1_-_36557517_36557561	1.74999	Sox2	ENSMUST00000114990.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000128104.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000027295.4|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr10_-_89257578_89257622	1.74966	Sox2	ENSMUST00000182341.1|Ano4|ENSMUSG00000035189.10|anoctamin 4 	ENSMUST00000182613.1|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr11_-_98022594_98022671	1.74881	Sox2	ENSMUST00000103144.3|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000017552.6|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000092736.4|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000107562.1|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit
mm10_v2_chr10_+_69706326_69706382	1.74648	Sox2	ENSMUST00000182992.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr18_-_43059418_43059471	1.74577	Sox2	ENSMUST00000025377.7|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr13_-_49147931_49148037	1.73705	Sox2	ENSMUST00000162581.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110097.2|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000049265.8|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000035538.6|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110096.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000091623.3|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2
mm10_v2_chr11_-_78165521_78165589	1.72698	Sox2	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr4_+_125490688_125490704	1.72269	Sox2	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr7_+_80860909_80860972	1.7142	Sox2	ENSMUST00000132163.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2 	ENSMUST00000147125.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2
mm10_v2_chr2_+_55437100_55437182	1.71236	Sox2	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr8_-_122678072_122678182	1.71061	Sox2	ENSMUST00000006525.7|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) 	ENSMUST00000064674.6|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr9_-_107710475_107710475	1.70405	Sox2	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr15_-_95528228_95528266	1.69598	Sox2	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr15_-_75567176_75567259	1.69022	Sox2	ENSMUST00000156032.1|Ly6h|ENSMUSG00000022577.10|lymphocyte antigen 6 complex, locus H 	ENSMUST00000127095.1|Ly6h|ENSMUSG00000022577.10|lymphocyte antigen 6 complex, locus H
mm10_v2_chrX_+_93654863_93654981	1.68743	Sox2	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr15_-_79742493_79742511	1.67897	Sox2	ENSMUST00000100439.3|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr9_+_51621425_51621425	1.67101	Sox2	ENSMUST00000089534.4|Gm7293|ENSMUSG00000078308.1|predicted gene 7293
mm10_v2_chr2_-_151973840_151973966	1.66883	Sox2	ENSMUST00000109865.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A 	ENSMUST00000109864.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr5_+_148265202_148265263	1.6649	Sox2	ENSMUST00000110515.2|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr11_+_69846665_69846681	1.66419	Sox2	ENSMUST00000019605.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr13_-_73989148_73989148	1.65844	Sox2	ENSMUST00000071737.4|Gm10126|ENSMUSG00000063180.4|predicted gene 10126
mm10_v2_chr14_+_61599493_61599548	1.6565	Sox2	ENSMUST00000039562.6|Trim13|ENSMUSG00000035235.6|tripartite motif-containing 13
mm10_v2_chr4_+_116221590_116221618	1.65631	Sox2	ENSMUST00000147292.1|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr8_-_123515333_123515437	1.65244	Sox2	ENSMUST00000177240.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr4_+_102254739_102254761	1.64827	Sox2	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr10_+_80151154_80151375	1.6445	Sox2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr12_+_95692212_95692246	1.64266	Sox2	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr13_+_88821472_88821520	1.63556	Sox2	ENSMUST00000118731.1|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3 	ENSMUST00000081769.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr3_-_107931579_107931742	1.61728	Sox2	ENSMUST00000133947.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000124215.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106688.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106687.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr2_-_119271202_119271272	1.61688	Sox2	ENSMUST00000037360.7|Rhov|ENSMUSG00000034226.7|ras homolog gene family, member V
mm10_v2_chr10_+_17723220_17723229	1.61192	Sox2	ENSMUST00000038107.7|Cited2|ENSMUSG00000039910.9|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm10_v2_chr6_-_18514802_18514869	1.61003	Sox2	ENSMUST00000090601.5|Cttnbp2|ENSMUSG00000000416.10|cortactin binding protein 2
mm10_v2_chr11_-_87074055_87074071	1.60789	Sox2	ENSMUST00000020804.7|Gdpd1|ENSMUSG00000061666.6|glycerophosphodiester phosphodiesterase domain containing 1
mm10_v2_chr7_+_139248477_139248532	1.60049	Sox2	ENSMUST00000093993.3|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B 	ENSMUST00000172136.1|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B
mm10_v2_chr15_-_39943963_39944029	1.59507	Sox2	ENSMUST00000110305.2|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr2_+_157560078_157560130	1.59363	Sox2	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr7_+_16310412_16310455	1.59192	Sox2	ENSMUST00000136781.1|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr4_-_21685782_21685805	1.59082	Sox2	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr11_+_67586675_67586720	1.58913	Sox2	ENSMUST00000108680.1|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr11_-_102447647_102447682	1.57818	Sox2	ENSMUST00000049057.4|Fam171a2|ENSMUSG00000034685.4|family with sequence similarity 171, member A2
mm10_v2_chr17_-_87282793_87282821	1.57109	Sox2	ENSMUST00000146560.2|4833418N02Rik|ENSMUSG00000085287.2|RIKEN cDNA 4833418N02 gene
mm10_v2_chr15_-_84855093_84855127	1.56364	Sox2	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr7_+_126272589_126272619	1.5603	Sox2	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr13_+_42709482_42709581	1.55449	Sox2	ENSMUST00000066928.5|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1 	ENSMUST00000148891.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr11_-_33843526_33843629	1.55343	Sox2	ENSMUST00000065970.5|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1 	ENSMUST00000109340.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr1_+_62703667_62703702	1.55297	Sox2	ENSMUST00000114155.1|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000027112.6|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000063594.6|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000114157.2|Nrp2|ENSMUSG00000025969.9|neuropilin 2
mm10_v2_chr6_+_77242715_77242729	1.54889	Sox2	ENSMUST00000161677.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr1_+_42952872_42952983	1.54327	Sox2	ENSMUST00000179766.1|Gpr45|ENSMUSG00000041907.8|G protein-coupled receptor 45
mm10_v2_chr15_-_102722150_102722178	1.54168	Sox2	ENSMUST00000023818.3|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr16_+_17070127_17070215	1.53747	Sox2	ENSMUST00000115729.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr11_-_3863895_3863910	1.53746	Sox2	ENSMUST00000070552.7|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr5_-_122779278_122779434	1.53507	Sox2	ENSMUST00000111668.3|Camkk2|ENSMUSG00000029471.9|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm10_v2_chr5_+_148265307_148265345	1.5318	Sox2	ENSMUST00000110514.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr5_+_35893319_35893426	1.5236	Sox2	ENSMUST00000064571.4|Afap1|ENSMUSG00000029094.5|actin filament associated protein 1
mm10_v2_chr17_+_8340399_8340406	1.51699	Sox2	ENSMUST00000069742.6|Prr18|ENSMUSG00000055945.7|proline rich region 18
mm10_v2_chr9_-_15045378_15045502	1.51255	Sox2	ENSMUST00000164273.1|Panx1|ENSMUSG00000031934.7|pannexin 1
mm10_v2_chr2_-_181599128_181599235	1.50888	Sox2	ENSMUST00000060173.8|Samd10|ENSMUSG00000038605.11|sterile alpha motif domain containing 10
mm10_v2_chr13_+_88821606_88821642	1.49831	Sox2	ENSMUST00000043111.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr5_-_147076482_147076586	1.49791	Sox2	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr5_-_131538687_131538717	1.49711	Sox2	ENSMUST00000161374.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr16_-_30550560_30550594	1.49668	Sox2	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr4_+_62965560_62965617	1.49604	Sox2	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr7_+_100493795_100493848	1.48482	Sox2	ENSMUST00000129324.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr12_-_23968845_23968845	1.48343	Sox2	ENSMUST00000171153.1|Gm17330|ENSMUSG00000095329.1|predicted gene, 17330
mm10_v2_chr8_+_35587780_35587825	1.47875	Sox2	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr1_+_17145357_17145431	1.46573	Sox2	ENSMUST00000026879.7|Gdap1|ENSMUSG00000025777.7|ganglioside-induced differentiation-associated-protein 1
mm10_v2_chr2_+_68117713_68117713	1.46435	Sox2	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr8_+_34807287_34807310	1.4641	Sox2	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr11_+_46055973_46056068	1.45094	Sox2	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr4_-_132049058_132049156	1.44829	Sox2	ENSMUST00000105981.2|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000084253.3|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000141291.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr6_+_54040078_54040091	1.44823	Sox2	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr6_+_77242644_77242697	1.44564	Sox2	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr6_-_138421379_138421452	1.424	Sox2	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr10_+_69925766_69925786	1.42393	Sox2	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr17_+_80944611_80944644	1.4194	Sox2	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr16_+_18127607_18127649	1.41776	Sox2	ENSMUST00000059589.5|Rtn4r|ENSMUSG00000043811.5|reticulon 4 receptor
mm10_v2_chr1_+_66321708_66321719	1.41641	Sox2	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr4_+_116221689_116221698	1.41298	Sox2	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr4_-_150652097_150652181	1.41143	Sox2	ENSMUST00000117997.1|Slc45a1|ENSMUSG00000039838.5|solute carrier family 45, member 1 	ENSMUST00000037827.3|Slc45a1|ENSMUSG00000039838.5|solute carrier family 45, member 1
mm10_v2_chr1_-_139377094_139377110	1.41129	Sox2	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr11_-_3774706_3774738	1.40813	Sox2	ENSMUST00000155197.1|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr4_+_9269285_9269335	1.40507	Sox2	ENSMUST00000038841.7|Clvs1|ENSMUSG00000041216.9|clavesin 1
mm10_v2_chr5_+_81021583_81021593	1.40329	Sox2	ENSMUST00000121707.1|Lphn3|ENSMUSG00000037605.10|latrophilin 3
mm10_v2_chr12_+_108605757_108605814	1.40067	Sox2	ENSMUST00000109854.2|Evl|ENSMUSG00000021262.8|Ena-vasodilator stimulated phosphoprotein
mm10_v2_chr10_+_80299084_80299126	1.3997	Sox2	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr2_-_77280589_77280648	1.39959	Sox2	ENSMUST00000102659.1|Sestd1|ENSMUSG00000042272.11|SEC14 and spectrin domains 1
mm10_v2_chr10_-_83533383_83533406	1.39852	Sox2	ENSMUST00000146640.1|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr15_-_79441999_79442065	1.39436	Sox2	ENSMUST00000117786.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000120859.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr4_+_116221633_116221661	1.39389	Sox2	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr19_+_4756557_4756623	1.39328	Sox2	ENSMUST00000036744.7|Rbm4b|ENSMUSG00000033760.10|RNA binding motif protein 4B
mm10_v2_chr5_+_148265265_148265305	1.39314	Sox2	ENSMUST00000071878.5|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr8_+_69808672_69808742	1.38555	Sox2	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr2_-_130839683_130839696	1.38367	Sox2	ENSMUST00000119422.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr2_-_152830615_152830680	1.37249	Sox2	ENSMUST00000146380.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134902.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134357.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000109820.3|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr17_+_72918298_72918316	1.36194	Sox2	ENSMUST00000024857.6|Lbh|ENSMUSG00000024063.6|limb-bud and heart
mm10_v2_chr10_+_107271827_107271850	1.36075	Sox2	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr8_-_41054771_41054802	1.35542	Sox2	ENSMUST00000093534.4|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr5_+_90931196_90931311	1.35424	Sox2	ENSMUST00000071652.4|Mthfd2l|ENSMUSG00000029376.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm10_v2_chr11_+_3330781_3330812	1.35384	Sox2	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr1_-_12991109_12991177	1.35059	Sox2	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr10_+_61171954_61171986	1.3399	Sox2	ENSMUST00000122261.1|Tbata|ENSMUSG00000020096.13|thymus, brain and testes associated 	ENSMUST00000121297.1|Tbata|ENSMUSG00000020096.13|thymus, brain and testes associated 	ENSMUST00000035894.5|Tbata|ENSMUSG00000020096.13|thymus, brain and testes associated
mm10_v2_chr6_-_144209448_144209469	1.3387	Sox2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr11_-_51606840_51606857	1.33786	Sox2	ENSMUST00000074669.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000101249.2|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000109103.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B
mm10_v2_chr15_+_98634743_98634778	1.33732	Sox2	ENSMUST00000003442.7|Cacnb3|ENSMUSG00000003352.7|calcium channel, voltage-dependent, beta 3 subunit
mm10_v2_chr16_+_20097554_20097596	1.33705	Sox2	ENSMUST00000023509.3|Klhl24|ENSMUSG00000062901.2|kelch-like 24
mm10_v2_chr1_+_132191436_132191436	1.3342	Sox2	ENSMUST00000112357.2|Lemd1|ENSMUSG00000079330.2|LEM domain containing 1
mm10_v2_chr2_-_148045891_148045948	1.3327	Sox2	ENSMUST00000109964.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chr18_+_37307445_37307462	1.32168	Sox2	ENSMUST00000056712.2|Pcdhb4|ENSMUSG00000045689.2|protocadherin beta 4
mm10_v2_chr12_+_24974914_24974948	1.31858	Sox2	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr6_-_144209558_144209647	1.31614	Sox2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr1_-_132390301_132390373	1.31318	Sox2	ENSMUST00000132435.1|Tmcc2|ENSMUSG00000042066.9|transmembrane and coiled-coil domains 2
mm10_v2_chr10_-_81627797_81627797	1.3071	Sox2	ENSMUST00000042923.8|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr2_+_118900377_118900397	1.30293	Sox2	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr6_-_144209471_144209487	1.30035	Sox2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr15_+_82275197_82275281	1.29583	Sox2	ENSMUST00000116423.1|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr3_-_154328634_154328663	1.29229	Sox2	ENSMUST00000167744.1|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8
mm10_v2_chr17_-_87282771_87282786	1.29092	Sox2	ENSMUST00000161759.1|4833418N02Rik|ENSMUSG00000085287.2|RIKEN cDNA 4833418N02 gene
mm10_v2_chr10_-_83534130_83534141	1.29071	Sox2	ENSMUST00000020497.7|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr9_+_74976096_74976177	1.28593	Sox2	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr10_+_69925484_69925532	1.28507	Sox2	ENSMUST00000182692.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092433.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_-_76571527_76571558	1.27369	Sox2	ENSMUST00000072740.6|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr7_+_16309577_16309641	1.27338	Sox2	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr12_-_14152038_14152069	1.26908	Sox2	ENSMUST00000020926.6|Fam84a|ENSMUSG00000020607.6|family with sequence similarity 84, member A
mm10_v2_chr15_-_102722120_102722137	1.26438	Sox2	ENSMUST00000171838.1|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr1_+_153749496_153749523	1.25887	Sox2	ENSMUST00000182722.1|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr10_+_69925954_69926133	1.25517	Sox2	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr14_+_26638074_26638151	1.25421	Sox2	ENSMUST00000022429.2|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr7_+_45785331_45785390	1.25381	Sox2	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chrX_+_155262443_155262481	1.2516	Sox2	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr19_-_4943049_4943127	1.24849	Sox2	ENSMUST00000133254.1|Peli3|ENSMUSG00000024901.8|pellino 3 	ENSMUST00000120475.1|Peli3|ENSMUSG00000024901.8|pellino 3 	ENSMUST00000025834.7|Peli3|ENSMUSG00000024901.8|pellino 3
mm10_v2_chr10_+_79996479_79996505	1.24345	Sox2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chrX_+_159840463_159840481	1.23973	Sox2	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr8_+_109705549_109705636	1.23204	Sox2	ENSMUST00000034163.8|Zfp821|ENSMUSG00000031728.9|zinc finger protein 821
mm10_v2_chr11_-_70220776_70220790	1.22832	Sox2	ENSMUST00000141290.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr2_-_57124003_57124071	1.22819	Sox2	ENSMUST00000112629.1|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr6_+_61180313_61180400	1.22795	Sox2	ENSMUST00000126214.1|Ccser1|ENSMUSG00000039578.10|coiled-coil serine rich 1
mm10_v2_chr2_-_51149100_51149115	1.22677	Sox2	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr9_-_50727921_50728008	1.22624	Sox2	ENSMUST00000118707.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000034566.8|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr14_+_60378242_60378292	1.22456	Sox2	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr8_-_84937347_84937367	1.21942	Sox2	ENSMUST00000109741.2|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1 	ENSMUST00000119820.1|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1
mm10_v2_chr4_+_43957678_43957735	1.21753	Sox2	ENSMUST00000107855.1|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr11_-_33843405_33843461	1.21634	Sox2	ENSMUST00000101368.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr15_+_92597104_92597121	1.21619	Sox2	ENSMUST00000035399.8|Pdzrn4|ENSMUSG00000036218.9|PDZ domain containing RING finger 4
mm10_v2_chr4_+_130792513_130792667	1.21584	Sox2	ENSMUST00000070478.3|Sdc3|ENSMUSG00000025743.8|syndecan 3
mm10_v2_chr1_-_36558214_36558266	1.21299	Sox2	ENSMUST00000154493.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr4_+_128727585_128727710	1.21215	Sox2	ENSMUST00000106079.3|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000133439.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr7_-_142095266_142095306	1.21172	Sox2	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr11_+_102393403_102393496	1.20894	Sox2	ENSMUST00000107105.2|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000107102.1|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000107103.1|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000006750.7|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A
mm10_v2_chr2_+_131491764_131491943	1.20808	Sox2	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr17_-_35909626_35909700	1.20608	Sox2	ENSMUST00000141132.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr9_-_103761820_103761847	1.19983	Sox2	ENSMUST00000049452.8|Tmem108|ENSMUSG00000042757.9|transmembrane protein 108
mm10_v2_chr4_-_155043143_155043172	1.19964	Sox2	ENSMUST00000135665.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr3_+_98382438_98382520	1.19677	Sox2	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr15_-_95528702_95528777	1.1949	Sox2	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr3_+_13946368_13946379	1.19379	Sox2	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr2_-_168741752_168741800	1.19276	Sox2	ENSMUST00000029060.4|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr18_-_46212595_46212634	1.19158	Sox2	ENSMUST00000037011.4|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr5_+_142702091_142702153	1.18154	Sox2	ENSMUST00000058418.7|Slc29a4|ENSMUSG00000050822.7|solute carrier family 29 (nucleoside transporters), member 4
mm10_v2_chr12_-_22623087_22623087	1.17979	Sox2	ENSMUST00000171036.1|Gm17391|ENSMUSG00000095261.1|predicted gene, 17391
mm10_v2_chr11_-_70220794_70220832	1.17892	Sox2	ENSMUST00000159867.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr9_-_50728067_50728129	1.17818	Sox2	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chrX_+_93675088_93675161	1.17644	Sox2	ENSMUST00000045898.3|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr7_+_64502090_64502155	1.17476	Sox2	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr3_+_98382538_98382553	1.17057	Sox2	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr5_-_30105359_30105359	1.16891	Sox2	ENSMUST00000127749.3|3110082J24Rik|ENSMUSG00000086815.3|RIKEN cDNA 3110082J24 gene
mm10_v2_chr6_-_138422898_138422999	1.16786	Sox2	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr1_-_173367638_173367695	1.16731	Sox2	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr5_+_34549595_34549688	1.16608	Sox2	ENSMUST00000179943.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr2_+_65930117_65930190	1.16126	Sox2	ENSMUST00000176109.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr7_-_16874845_16874889	1.16091	Sox2	ENSMUST00000181501.1|9330104G04Rik|ENSMUSG00000097842.1|RIKEN cDNA 9330104G04 gene
mm10_v2_chr5_+_66968416_66968447	1.16076	Sox2	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr1_-_139377041_139377078	1.15924	Sox2	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr3_-_84270782_84270794	1.15743	Sox2	ENSMUST00000054990.4|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr17_-_57087729_57087782	1.15613	Sox2	ENSMUST00000071135.5|Tubb4a|ENSMUSG00000062591.5|tubulin, beta 4A class IVA
mm10_v2_chr7_-_45814302_45814321	1.15237	Sox2	ENSMUST00000107729.1|Cyth2|ENSMUSG00000003269.8|cytohesin 2 	ENSMUST00000056820.6|Cyth2|ENSMUSG00000003269.8|cytohesin 2
mm10_v2_chr4_-_41723129_41723179	1.15079	Sox2	ENSMUST00000171641.1|Dctn3|ENSMUSG00000028447.5|dynactin 3 	ENSMUST00000030158.4|Dctn3|ENSMUSG00000028447.5|dynactin 3
mm10_v2_chr2_+_156721069_156721084	1.15049	Sox2	ENSMUST00000000094.7|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr11_+_4883186_4883222	1.14501	Sox2	ENSMUST00000139737.1|Nipsnap1|ENSMUSG00000034285.9|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm10_v2_chr11_-_115699307_115699324	1.14062	Sox2	ENSMUST00000106499.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr6_-_72958465_72958496	1.13849	Sox2	ENSMUST00000114050.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr2_-_57114970_57115038	1.13507	Sox2	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr2_+_25403128_25403200	1.13266	Sox2	ENSMUST00000154809.1|Npdc1|ENSMUSG00000015094.10|neural proliferation, differentiation and control 1 	ENSMUST00000055921.7|Npdc1|ENSMUSG00000015094.10|neural proliferation, differentiation and control 1 	ENSMUST00000141567.1|Npdc1|ENSMUSG00000015094.10|neural proliferation, differentiation and control 1
mm10_v2_chr10_-_116473875_116473929	1.12863	Sox2	ENSMUST00000068233.4|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm10_v2_chr18_-_77565050_77565162	1.12747	Sox2	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr1_+_153749414_153749442	1.12595	Sox2	ENSMUST00000086209.3|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr18_+_37355271_37355271	1.12337	Sox2	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr1_+_135584773_135584773	1.12121	Sox2	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr10_+_80148263_80148279	1.11748	Sox2	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr17_+_12119274_12119348	1.11571	Sox2	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr11_-_11890368_11890379	1.11426	Sox2	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr17_-_35701937_35701964	1.10667	Sox2	ENSMUST00000155628.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr1_+_66364623_66364663	1.10491	Sox2	ENSMUST00000077355.5|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114012.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr9_+_18427543_18427543	1.09961	Sox2	ENSMUST00000053326.9|Gm5612|ENSMUSG00000074501.5|predicted gene 5612
mm10_v2_chr5_-_114380459_114380487	1.09383	Sox2	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr4_-_129623870_129623947	1.09346	Sox2	ENSMUST00000106035.1|Ccdc28b|ENSMUSG00000028795.9|coiled coil domain containing 28B 	ENSMUST00000150357.1|Ccdc28b|ENSMUSG00000028795.9|coiled coil domain containing 28B 	ENSMUST00000030586.8|Ccdc28b|ENSMUSG00000028795.9|coiled coil domain containing 28B
mm10_v2_chr7_+_29307924_29308057	1.09245	Sox2	ENSMUST00000108230.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1 	ENSMUST00000065181.5|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr10_+_61475782_61475834	1.08914	Sox2	ENSMUST00000049242.7|Lrrc20|ENSMUSG00000037151.7|leucine rich repeat containing 20
mm10_v2_chr10_-_95324072_95324114	1.08681	Sox2	ENSMUST00000053594.5|Cradd|ENSMUSG00000045867.9|CASP2 and RIPK1 domain containing adaptor with death domain
mm10_v2_chr8_+_45507768_45507818	1.08674	Sox2	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr11_-_11890394_11890408	1.08409	Sox2	ENSMUST00000109659.2|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr6_-_42693087_42693100	1.08053	Sox2	ENSMUST00000121083.1|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr11_+_97415527_97415538	1.07944	Sox2	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr17_+_46890621_46890652	1.07944	Sox2	ENSMUST00000040434.7|Tbcc|ENSMUSG00000036430.7|tubulin-specific chaperone C
mm10_v2_chr5_+_137761680_137761714	1.07877	Sox2	ENSMUST00000110983.2|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4 	ENSMUST00000031738.4|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4
mm10_v2_chr2_-_165034770_165034820	1.07532	Sox2	ENSMUST00000122070.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000121377.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr11_+_114851142_114851173	1.07084	Sox2	ENSMUST00000133245.1|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C 	ENSMUST00000122967.2|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C
mm10_v2_chr6_+_127887582_127887639	1.07011	Sox2	ENSMUST00000032501.4|Tspan11|ENSMUSG00000030351.4|tetraspanin 11
mm10_v2_chr8_-_111910171_111910199	1.06775	Sox2	ENSMUST00000034430.4|Chst5|ENSMUSG00000031952.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
mm10_v2_chr10_-_116473418_116473514	1.0665	Sox2	ENSMUST00000087965.4|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4 	ENSMUST00000164271.1|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm10_v2_chr15_-_79254737_79254764	1.06462	Sox2	ENSMUST00000039752.3|Slc16a8|ENSMUSG00000032988.3|solute carrier family 16 (monocarboxylic acid transporters), member 8
mm10_v2_chr2_+_131491958_131491993	1.06169	Sox2	ENSMUST00000110181.1|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110180.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr10_-_63244135_63244170	1.05901	Sox2	ENSMUST00000054837.3|1700120B22Rik|ENSMUSG00000045391.3|RIKEN cDNA 1700120B22 gene
mm10_v2_chr3_-_107931817_107931885	1.05853	Sox2	ENSMUST00000004137.4|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr10_-_62110945_62111060	1.0583	Sox2	ENSMUST00000142821.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000124615.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000064050.4|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000125704.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000142796.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene
mm10_v2_chr2_-_38714491_38714542	1.05747	Sox2	ENSMUST00000028084.4|Nr5a1|ENSMUSG00000026751.8|nuclear receptor subfamily 5, group A, member 1
mm10_v2_chr8_-_4259257_4259283	1.05683	Sox2	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr19_+_55741810_55741842	1.05669	Sox2	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr13_-_54687644_54687688	1.05652	Sox2	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr1_+_66386968_66386999	1.05614	Sox2	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr10_-_33624587_33624769	1.055	Sox2	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chr15_-_39943689_39943788	1.05216	Sox2	ENSMUST00000022916.5|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr13_-_34130345_34130361	1.05011	Sox2	ENSMUST00000075774.3|Tubb2b|ENSMUSG00000045136.5|tubulin, beta 2B class IIB
mm10_v2_chr12_+_29528382_29528468	1.04852	Sox2	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr2_-_79456750_79456761	1.0481	Sox2	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr2_-_113217051_113217094	1.04391	Sox2	ENSMUST00000080673.5|Ryr3|ENSMUSG00000057378.8|ryanodine receptor 3
mm10_v2_chr7_+_82174796_82174825	1.04379	Sox2	ENSMUST00000032874.7|Sh3gl3|ENSMUSG00000030638.7|SH3-domain GRB2-like 3
mm10_v2_chr3_-_30793549_30793595	1.04326	Sox2	ENSMUST00000180833.1|4933429H19Rik|ENSMUSG00000097786.1|RIKEN cDNA 4933429H19 gene
mm10_v2_chr2_+_26315513_26315602	1.04265	Sox2	ENSMUST00000066936.2|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans) 	ENSMUST00000078616.5|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr5_+_104775911_104775911	1.03926	Sox2	ENSMUST00000055593.7|Gm8258|ENSMUSG00000048334.7|predicted gene 8258
mm10_v2_chr17_-_87446854_87446935	1.03669	Sox2	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr3_+_88621274_88621292	1.03462	Sox2	ENSMUST00000107510.3|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr17_+_31296191_31296253	1.03453	Sox2	ENSMUST00000165149.1|Slc37a1|ENSMUSG00000024036.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm10_v2_chr10_+_69925800_69925824	1.03433	Sox2	ENSMUST00000182029.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr1_+_9601163_9601256	1.03276	Sox2	ENSMUST00000088666.3|3110035E14Rik|ENSMUSG00000067879.3|RIKEN cDNA 3110035E14 gene
mm10_v2_chr2_+_68861564_68861586	1.03167	Sox2	ENSMUST00000176018.1|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr8_+_11728105_11728143	1.02864	Sox2	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chrX_+_159708593_159708612	1.02854	Sox2	ENSMUST00000080394.6|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr15_+_82274935_82275034	1.01894	Sox2	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr2_+_28513243_28513326	1.01828	Sox2	ENSMUST00000028170.8|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr11_+_121237216_121237289	1.01536	Sox2	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr2_+_156721037_156721062	1.00611	Sox2	ENSMUST00000109566.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000146412.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000177013.1|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000171030.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr7_+_6172482_6172531	1.00389	Sox2	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr16_+_23226014_23226077	1.00376	Sox2	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr14_-_54781886_54781925	1.00345	Sox2	ENSMUST00000022787.6|Slc7a8|ENSMUSG00000022180.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm10_v2_chr16_+_17146937_17146985	1.00318	Sox2	ENSMUST00000115706.1|Ydjc|ENSMUSG00000041774.8|YdjC homolog (bacterial) 	ENSMUST00000069064.4|Ydjc|ENSMUSG00000041774.8|YdjC homolog (bacterial)
mm10_v2_chr1_+_6730051_6730117	1.0007	Sox2	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr4_-_118179628_118179682	0.998766	Sox2	ENSMUST00000097911.2|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chr19_+_55742056_55742066	0.994451	Sox2	ENSMUST00000111659.2|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr12_-_108835845_108835893	0.992365	Sox2	ENSMUST00000021693.3|Slc25a29|ENSMUSG00000021265.3|solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29
mm10_v2_chr11_-_69822144_69822180	0.989909	Sox2	ENSMUST00000045771.6|Spem1|ENSMUSG00000041165.6|sperm maturation 1
mm10_v2_chr4_-_110290884_110290913	0.989494	Sox2	ENSMUST00000142722.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr4_+_106911517_106911667	0.988046	Sox2	ENSMUST00000072753.6|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000097934.3|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr3_+_88615367_88615434	0.987918	Sox2	ENSMUST00000176539.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr2_-_64975762_64975795	0.987897	Sox2	ENSMUST00000156765.1|Grb14|ENSMUSG00000026888.8|growth factor receptor bound protein 14
mm10_v2_chr2_+_30807826_30807999	0.987018	Sox2	ENSMUST00000041830.3|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENSMUST00000152374.1|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1
mm10_v2_chr15_-_84557776_84557875	0.986305	Sox2	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr10_-_79874565_79874634	0.985077	Sox2	ENSMUST00000167250.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000092325.4|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chr16_-_96082513_96082573	0.984911	Sox2	ENSMUST00000113827.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr15_+_76246747_76246807	0.980766	Sox2	ENSMUST00000023225.6|Grina|ENSMUSG00000022564.6|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
mm10_v2_chr12_+_3365108_3365142	0.980423	Sox2	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr7_-_45814277_45814300	0.978027	Sox2	ENSMUST00000107728.1|Cyth2|ENSMUSG00000003269.8|cytohesin 2
mm10_v2_chr2_+_32629467_32629514	0.975434	Sox2	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr7_+_97081711_97081778	0.974701	Sox2	ENSMUST00000004622.5|Gab2|ENSMUSG00000004508.5|growth factor receptor bound protein 2-associated protein 2
mm10_v2_chr6_+_83795022_83795034	0.970951	Sox2	ENSMUST00000113851.1|Nagk|ENSMUSG00000034744.7|N-acetylglucosamine kinase
mm10_v2_chr18_+_35965036_35965087	0.969978	Sox2	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr3_+_88532314_88532396	0.966444	Sox2	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr12_+_110601439_110601452	0.962172	Sox2	ENSMUST00000018851.7|Dync1h1|ENSMUSG00000018707.7|dynein cytoplasmic 1 heavy chain 1
mm10_v2_chr8_-_24438937_24438952	0.961273	Sox2	ENSMUST00000052622.4|1810011O10Rik|ENSMUSG00000056313.4|RIKEN cDNA 1810011O10 gene
mm10_v2_chr7_+_16875302_16875392	0.957057	Sox2	ENSMUST00000108493.1|Dact3|ENSMUSG00000078794.3|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm10_v2_chr4_-_130574150_130574237	0.956233	Sox2	ENSMUST00000105993.3|Nkain1|ENSMUSG00000078532.3|Na+/K+ transporting ATPase interacting 1
mm10_v2_chr11_-_61175020_61175060	0.955774	Sox2	ENSMUST00000041683.8|Usp22|ENSMUSG00000042506.9|ubiquitin specific peptidase 22
mm10_v2_chr5_+_66676098_66676257	0.951703	Sox2	ENSMUST00000031131.9|Uchl1|ENSMUSG00000029223.9|ubiquitin carboxy-terminal hydrolase L1
mm10_v2_chr8_+_3493135_3493212	0.948491	Sox2	ENSMUST00000061508.7|Zfp358|ENSMUSG00000047264.7|zinc finger protein 358
mm10_v2_chr13_-_8858762_8858829	0.947794	Sox2	ENSMUST00000176329.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr10_-_8518801_8518851	0.94737	Sox2	ENSMUST00000061601.7|Ust|ENSMUSG00000047712.7|uronyl-2-sulfotransferase
mm10_v2_chr3_-_17786834_17786898	0.946638	Sox2	ENSMUST00000099198.2|Gm10742|ENSMUSG00000074674.2|predicted gene 10742
mm10_v2_chr10_-_79874233_79874439	0.943224	Sox2	ENSMUST00000166023.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000167707.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000165601.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chr5_+_142960343_142960363	0.942022	Sox2	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr2_-_27426992_27427061	0.940338	Sox2	ENSMUST00000056176.7|Vav2|ENSMUSG00000009621.12|vav 2 oncogene
mm10_v2_chr1_+_6730135_6730176	0.938024	Sox2	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr6_+_48613180_48613180	0.937373	Sox2	ENSMUST00000061720.4|Zfp775|ENSMUSG00000007216.4|zinc finger protein 775
mm10_v2_chr5_-_114380505_114380520	0.93716	Sox2	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr12_+_18853872_18853872	0.936132	Sox2	ENSMUST00000101582.3|Gm3944|ENSMUSG00000094947.1|predicted gene 3944
mm10_v2_chr4_-_129742275_129742312	0.935273	Sox2	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chrX_+_161717498_161717627	0.934869	Sox2	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr5_+_66968559_66968577	0.933988	Sox2	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr5_+_30853796_30853801	0.932543	Sox2	ENSMUST00000126284.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr7_+_144175513_144175529	0.932443	Sox2	ENSMUST00000105900.1|Shank2|ENSMUSG00000037541.13|SH3/ankyrin domain gene 2
mm10_v2_chr18_+_37477768_37477835	0.931788	Sox2	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr15_-_98918131_98918231	0.930311	Sox2	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr7_-_27196138_27196271	0.928674	Sox2	ENSMUST00000122202.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000080356.3|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr1_-_25228814_25228834	0.928567	Sox2	ENSMUST00000126626.1|Bai3|ENSMUSG00000033569.11|brain-specific angiogenesis inhibitor 3
mm10_v2_chr15_-_79441802_79441860	0.92817	Sox2	ENSMUST00000122044.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000135519.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr14_+_26638237_26638347	0.927985	Sox2	ENSMUST00000112318.3|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr5_+_30711564_30711586	0.926005	Sox2	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr10_+_62133082_62133098	0.925592	Sox2	ENSMUST00000050103.1|Neurog3|ENSMUSG00000044312.3|neurogenin 3
mm10_v2_chr10_+_106470281_106470367	0.923099	Sox2	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chr17_-_35838208_35838243	0.922016	Sox2	ENSMUST00000134978.2|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr8_-_70120816_70120873	0.918334	Sox2	ENSMUST00000002412.8|Ncan|ENSMUSG00000002341.8|neurocan
mm10_v2_chr5_+_117976761_117976803	0.917883	Sox2	ENSMUST00000035579.6|Fbxo21|ENSMUSG00000032898.6|F-box protein 21
mm10_v2_chr19_+_45018114_45018153	0.916288	Sox2	ENSMUST00000178087.1|Lzts2|ENSMUSG00000035342.7|leucine zipper, putative tumor suppressor 2
mm10_v2_chr5_-_142906702_142906754	0.916184	Sox2	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr8_+_86745679_86745699	0.912861	Sox2	ENSMUST00000098532.2|Gm10638|ENSMUSG00000074178.2|predicted gene 10638
mm10_v2_chr3_+_69316857_69316869	0.910926	Sox2	ENSMUST00000029355.6|Ppm1l|ENSMUSG00000027784.8|protein phosphatase 1 (formerly 2C)-like
mm10_v2_chr18_+_75005839_75005945	0.909742	Sox2	ENSMUST00000040284.4|BC031181|ENSMUSG00000036299.4|cDNA sequence BC031181
mm10_v2_chr4_+_43641262_43641284	0.909322	Sox2	ENSMUST00000123351.1|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2 	ENSMUST00000128549.1|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr10_-_81627257_81627320	0.909095	Sox2	ENSMUST00000143424.1|Sirt6|ENSMUSG00000034748.10|sirtuin 6 	ENSMUST00000119324.1|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr3_-_38484831_38484864	0.907822	Sox2	ENSMUST00000120875.1|Ankrd50|ENSMUSG00000044864.10|ankyrin repeat domain 50
mm10_v2_chr13_+_13784278_13784365	0.904177	Sox2	ENSMUST00000021734.7|Gng4|ENSMUSG00000021303.7|guanine nucleotide binding protein (G protein), gamma 4
mm10_v2_chr6_-_42693030_42693070	0.895719	Sox2	ENSMUST00000045140.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr8_+_45628176_45628219	0.893736	Sox2	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr18_+_35965088_35965110	0.891626	Sox2	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr11_-_74590065_74590158	0.891315	Sox2	ENSMUST00000145524.1|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2 	ENSMUST00000047488.7|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2
mm10_v2_chr8_-_105289465_105289541	0.890179	Sox2	ENSMUST00000171788.1|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene 	ENSMUST00000014981.6|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene
mm10_v2_chr7_+_100494044_100494088	0.889739	Sox2	ENSMUST00000153287.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr6_-_39419757_39419817	0.888326	Sox2	ENSMUST00000146785.1|Mkrn1|ENSMUSG00000029922.9|makorin, ring finger protein, 1 	ENSMUST00000114823.1|Mkrn1|ENSMUSG00000029922.9|makorin, ring finger protein, 1
mm10_v2_chr5_-_135934590_135934613	0.887074	Sox2	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr4_-_140648736_140648781	0.886423	Sox2	ENSMUST00000039204.3|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000105799.1|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000097820.2|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr7_+_141949846_141949868	0.885706	Sox2	ENSMUST00000172652.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr7_-_13009795_13009856	0.883427	Sox2	ENSMUST00000051390.7|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45 	ENSMUST00000172240.1|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45
mm10_v2_chr12_+_19606929_19606929	0.883253	Sox2	ENSMUST00000105167.1|Gm9257|ENSMUSG00000095254.1|predicted gene 9257
mm10_v2_chr1_-_38821215_38821215	0.877551	Sox2	ENSMUST00000039612.4|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chr19_+_7417586_7417650	0.87735	Sox2	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr2_+_3713449_3713474	0.875045	Sox2	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr12_-_24252181_24252181	0.874601	Sox2	ENSMUST00000169148.1|Gm9312|ENSMUSG00000096279.1|predicted gene 9312
mm10_v2_chr19_-_7383026_7383063	0.874194	Sox2	ENSMUST00000025924.2|AI846148|ENSMUSG00000024970.4|expressed sequence AI846148
mm10_v2_chr3_-_127499095_127499137	0.870679	Sox2	ENSMUST00000182594.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr5_+_34549568_34549581	0.868702	Sox2	ENSMUST00000118545.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr9_+_21616230_21616281	0.866807	Sox2	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr11_+_62551167_62551191	0.864667	Sox2	ENSMUST00000019649.3|Ubb|ENSMUSG00000019505.7|ubiquitin B
mm10_v2_chr7_+_119900099_119900108	0.863391	Sox2	ENSMUST00000106516.1|Lyrm1|ENSMUSG00000030922.5|LYR motif containing 1
mm10_v2_chr7_+_141949982_141950086	0.863166	Sox2	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr7_+_24481991_24482076	0.860406	Sox2	ENSMUST00000068023.7|Cadm4|ENSMUSG00000054793.7|cell adhesion molecule 4
mm10_v2_chr18_+_37300799_37300835	0.857728	Sox2	ENSMUST00000051754.1|Pcdhb3|ENSMUSG00000045498.1|protocadherin beta 3
mm10_v2_chr12_-_112673944_112674086	0.854141	Sox2	ENSMUST00000130342.1|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr13_-_54565299_54565362	0.851728	Sox2	ENSMUST00000153065.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000126295.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000143144.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000132136.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr2_+_181187247_181187347	0.851724	Sox2	ENSMUST00000016488.6|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene 	ENSMUST00000108841.1|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm10_v2_chr17_+_43016536_43016591	0.849737	Sox2	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr9_+_21616166_21616177	0.844408	Sox2	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr4_+_127021311_127021339	0.841906	Sox2	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr17_+_87282880_87282950	0.840091	Sox2	ENSMUST00000041110.5|Ttc7|ENSMUSG00000036918.9|tetratricopeptide repeat domain 7 	ENSMUST00000125875.1|Ttc7|ENSMUSG00000036918.9|tetratricopeptide repeat domain 7
mm10_v2_chr7_+_28180226_28180266	0.839672	Sox2	ENSMUST00000172467.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr6_+_54039558_54039575	0.838285	Sox2	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr3_+_95111013_95111087	0.835793	Sox2	ENSMUST00000009102.8|Vps72|ENSMUSG00000008958.8|vacuolar protein sorting 72 (yeast)
mm10_v2_chr4_+_134468320_134468409	0.833566	Sox2	ENSMUST00000030636.4|Stmn1|ENSMUSG00000028832.5|stathmin 1 	ENSMUST00000127279.1|Stmn1|ENSMUSG00000028832.5|stathmin 1 	ENSMUST00000105867.1|Stmn1|ENSMUSG00000028832.5|stathmin 1
mm10_v2_chr11_+_97450136_97450180	0.832954	Sox2	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr5_+_147957310_147957357	0.831228	Sox2	ENSMUST00000085558.4|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2 	ENSMUST00000129092.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr4_-_91376490_91376502	0.82762	Sox2	ENSMUST00000107124.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr10_-_81266906_81266934	0.826408	Sox2	ENSMUST00000046114.4|Mrpl54|ENSMUSG00000034932.4|mitochondrial ribosomal protein L54
mm10_v2_chr4_-_33248500_33248518	0.824781	Sox2	ENSMUST00000049357.9|Pnrc1|ENSMUSG00000040128.9|proline-rich nuclear receptor coactivator 1
mm10_v2_chr18_+_23753708_23753725	0.824144	Sox2	ENSMUST00000115830.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr11_-_106159902_106159927	0.823121	Sox2	ENSMUST00000064545.4|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr11_-_97629685_97629716	0.821912	Sox2	ENSMUST00000052281.4|E130012A19Rik|ENSMUSG00000043439.4|RIKEN cDNA E130012A19 gene
mm10_v2_chr4_+_83417715_83417758	0.817119	Sox2	ENSMUST00000030206.3|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3 	ENSMUST00000071544.4|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3
mm10_v2_chr5_+_30711849_30711905	0.817075	Sox2	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr16_+_17070281_17070320	0.816762	Sox2	ENSMUST00000090199.3|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr6_-_86733218_86733256	0.815717	Sox2	ENSMUST00000113679.1|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr17_-_35704574_35704632	0.814069	Sox2	ENSMUST00000117301.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000134995.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr2_-_165034821_165034867	0.81398	Sox2	ENSMUST00000153905.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000040381.8|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr10_-_60831571_60831588	0.812165	Sox2	ENSMUST00000077925.5|Unc5b|ENSMUSG00000020099.7|unc-5 homolog B (C. elegans)
mm10_v2_chr4_+_34550937_34550937	0.811633	Sox2	ENSMUST00000084299.5|Akirin2|ENSMUSG00000028291.7|akirin 2
mm10_v2_chr7_+_46397648_46397783	0.80952	Sox2	ENSMUST00000160433.1|Kcnc1|ENSMUSG00000058975.6|potassium voltage gated channel, Shaw-related subfamily, member 1
mm10_v2_chr2_+_156721340_156721492	0.808503	Sox2	ENSMUST00000099145.5|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr7_-_111779963_111779993	0.802761	Sox2	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr5_-_110387090_110387154	0.80091	Sox2	ENSMUST00000056124.6|Fbrsl1|ENSMUSG00000043323.10|fibrosin-like 1
mm10_v2_chr6_+_83795205_83795238	0.798942	Sox2	ENSMUST00000113850.1|Nagk|ENSMUSG00000034744.7|N-acetylglucosamine kinase
mm10_v2_chr18_+_37755718_37755773	0.797451	Sox2	ENSMUST00000061279.7|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr10_+_36974558_36974579	0.795458	Sox2	ENSMUST00000105510.1|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr16_+_23224724_23224804	0.795209	Sox2	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr9_+_108392820_108392843	0.7952	Sox2	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr11_+_95009852_95009890	0.794262	Sox2	ENSMUST00000055947.3|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr17_+_37002574_37002596	0.794211	Sox2	ENSMUST00000173588.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr1_+_171411343_171411384	0.794026	Sox2	ENSMUST00000160486.1|Usf1|ENSMUSG00000026641.7|upstream transcription factor 1
mm10_v2_chr2_+_3713478_3713500	0.793361	Sox2	ENSMUST00000115053.2|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr11_-_106160708_106160860	0.792467	Sox2	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr2_+_32876114_32876241	0.78839	Sox2	ENSMUST00000028135.8|Fam129b|ENSMUSG00000026796.10|family with sequence similarity 129, member B
mm10_v2_chr2_-_65567465_65567495	0.787876	Sox2	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr1_-_158356258_158356313	0.785799	Sox2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr7_+_4915202_4915230	0.785165	Sox2	ENSMUST00000116354.2|Zfp628|ENSMUSG00000074406.4|zinc finger protein 628
mm10_v2_chr4_-_110292719_110292732	0.78417	Sox2	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr13_+_23575753_23575773	0.783292	Sox2	ENSMUST00000105105.1|Hist1h3d|ENSMUSG00000062808.4|histone cluster 1, H3d
mm10_v2_chr2_+_156065180_156065282	0.781128	Sox2	ENSMUST00000038860.5|Spag4|ENSMUSG00000038180.5|sperm associated antigen 4
mm10_v2_chr19_-_10869757_10869940	0.780949	Sox2	ENSMUST00000120524.1|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A 	ENSMUST00000025645.7|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A
mm10_v2_chr4_-_91376433_91376477	0.778944	Sox2	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr13_-_54565368_54565435	0.778521	Sox2	ENSMUST00000026989.8|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr11_+_83964419_83964478	0.776195	Sox2	ENSMUST00000049714.8|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000092834.5|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183714.1|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183456.1|Synrg|ENSMUSG00000034940.9|synergin, gamma
mm10_v2_chr7_-_141429351_141429429	0.769847	Sox2	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr7_+_130692532_130692575	0.769158	Sox2	ENSMUST00000033141.6|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr14_-_5880382_5880382	0.766993	Sox2	ENSMUST00000164484.1|Gm8237|ENSMUSG00000090707.2|predicted gene 8237
mm10_v2_chr5_+_93268247_93268314	0.76346	Sox2	ENSMUST00000121127.1|Ccng2|ENSMUSG00000029385.8|cyclin G2
mm10_v2_chr8_+_61224162_61224174	0.763151	Sox2	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr1_+_135146782_135146871	0.762346	Sox2	ENSMUST00000027684.4|Arl8a|ENSMUSG00000026426.4|ADP-ribosylation factor-like 8A
mm10_v2_chr2_+_163122605_163122620	0.760515	Sox2	ENSMUST00000144092.1|Gm11454|ENSMUSG00000086152.1|predicted gene 11454
mm10_v2_chr2_+_180042496_180042562	0.757506	Sox2	ENSMUST00000041126.8|Ss18l1|ENSMUSG00000039086.9|synovial sarcoma translocation gene on chromosome 18-like 1
mm10_v2_chr7_-_27195727_27195768	0.757431	Sox2	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr6_+_83794974_83794985	0.754969	Sox2	ENSMUST00000037376.7|Nagk|ENSMUSG00000034744.7|N-acetylglucosamine kinase
mm10_v2_chr16_-_34514084_34514128	0.753986	Sox2	ENSMUST00000089655.5|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr9_+_110052016_110052111	0.752747	Sox2	ENSMUST00000164930.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4 	ENSMUST00000163979.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4
mm10_v2_chr14_+_59201418_59201503	0.752011	Sox2	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr16_-_85901118_85901133	0.74594	Sox2	ENSMUST00000023611.5|Adamts5|ENSMUSG00000022894.5|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm10_v2_chr10_+_26078255_26078255	0.745776	Sox2	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr4_+_102570065_102570124	0.745367	Sox2	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr17_-_35838259_35838306	0.745221	Sox2	ENSMUST00000001566.8|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr2_-_118479635_118479711	0.739531	Sox2	ENSMUST00000110862.1|Srp14|ENSMUSG00000009549.8|signal recognition particle 14 	ENSMUST00000009693.8|Srp14|ENSMUSG00000009549.8|signal recognition particle 14
mm10_v2_chr5_+_138116903_138117041	0.739246	Sox2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr14_-_40966807_40966848	0.739214	Sox2	ENSMUST00000047652.5|Tspan14|ENSMUSG00000037824.5|tetraspanin 14
mm10_v2_chr16_-_34513944_34514056	0.738691	Sox2	ENSMUST00000151491.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114960.2|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr2_+_181767283_181767322	0.738101	Sox2	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr7_-_24972685_24972728	0.738079	Sox2	ENSMUST00000076961.7|Rabac1|ENSMUSG00000003380.10|Rab acceptor 1 (prenylated)
mm10_v2_chr15_-_98953541_98953560	0.737481	Sox2	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr18_+_37421418_37421455	0.737394	Sox2	ENSMUST00000053073.4|Pcdhb11|ENSMUSG00000051486.4|protocadherin beta 11
mm10_v2_chr3_-_154330543_154330576	0.736828	Sox2	ENSMUST00000184966.1|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8 	ENSMUST00000177846.2|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8
mm10_v2_chr5_-_142817654_142817668	0.736317	Sox2	ENSMUST00000151477.1|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr4_-_148159571_148159649	0.734821	Sox2	ENSMUST00000167160.1|Fbxo44|ENSMUSG00000029001.9|F-box protein 44 	ENSMUST00000151246.1|Fbxo44|ENSMUSG00000029001.9|F-box protein 44
mm10_v2_chr5_+_107331157_107331197	0.730654	Sox2	ENSMUST00000031215.8|Brdt|ENSMUSG00000029279.9|bromodomain, testis-specific 	ENSMUST00000112677.3|Brdt|ENSMUSG00000029279.9|bromodomain, testis-specific
mm10_v2_chr9_+_65676566_65676621	0.730222	Sox2	ENSMUST00000147732.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2 	ENSMUST00000136166.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2
mm10_v2_chr14_-_63177793_63177889	0.729808	Sox2	ENSMUST00000054963.9|Fdft1|ENSMUSG00000021273.9|farnesyl diphosphate farnesyl transferase 1
mm10_v2_chr2_-_25983056_25983154	0.728792	Sox2	ENSMUST00000127823.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000134882.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr10_+_36974536_36974556	0.725703	Sox2	ENSMUST00000019911.7|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr1_+_171411305_171411337	0.724879	Sox2	ENSMUST00000161241.1|Usf1|ENSMUSG00000026641.7|upstream transcription factor 1 	ENSMUST00000159207.1|Usf1|ENSMUSG00000026641.7|upstream transcription factor 1
mm10_v2_chr2_+_3114220_3114225	0.72267	Sox2	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr6_-_120493807_120493913	0.722055	Sox2	ENSMUST00000178687.1|Cecr6|ENSMUSG00000094626.1|cat eye syndrome chromosome region, candidate 6
mm10_v2_chr5_-_111761697_111761727	0.721413	Sox2	ENSMUST00000129146.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000137398.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000129065.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene
mm10_v2_chr9_-_22307638_22307694	0.717873	Sox2	ENSMUST00000086278.6|Zfp810|ENSMUSG00000066829.6|zinc finger protein 810
mm10_v2_chr1_+_171250416_171250433	0.717219	Sox2	ENSMUST00000111315.1|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 	ENSMUST00000006570.5|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm10_v2_chr2_+_156721009_156721031	0.714733	Sox2	ENSMUST00000131157.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr11_+_69846374_69846387	0.713982	Sox2	ENSMUST00000108632.1|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr17_-_35697971_35698001	0.712928	Sox2	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr4_+_48049080_48049114	0.711116	Sox2	ENSMUST00000153369.1|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr1_-_55226768_55226813	0.710762	Sox2	ENSMUST00000027121.8|Rftn2|ENSMUSG00000025978.8|raftlin family member 2 	ENSMUST00000114428.2|Rftn2|ENSMUSG00000025978.8|raftlin family member 2
mm10_v2_chr4_-_20778852_20778876	0.710701	Sox2	ENSMUST00000102998.3|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr13_+_43615710_43615788	0.709795	Sox2	ENSMUST00000059986.2|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr9_+_120929216_120929251	0.70972	Sox2	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr9_-_102354685_102354699	0.706952	Sox2	ENSMUST00000035129.7|Ephb1|ENSMUSG00000032537.8|Eph receptor B1 	ENSMUST00000085169.5|Ephb1|ENSMUSG00000032537.8|Eph receptor B1
mm10_v2_chr2_+_181767040_181767073	0.704297	Sox2	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr6_-_39419967_39420074	0.702825	Sox2	ENSMUST00000122996.1|Mkrn1|ENSMUSG00000029922.9|makorin, ring finger protein, 1
mm10_v2_chr11_+_120348678_120348782	0.701111	Sox2	ENSMUST00000143813.1|0610009L18Rik|ENSMUSG00000043644.4|RIKEN cDNA 0610009L18 gene
mm10_v2_chr8_+_69902178_69902194	0.699706	Sox2	ENSMUST00000050373.5|Tssk6|ENSMUSG00000047654.5|testis-specific serine kinase 6
mm10_v2_chr10_+_80179482_80179531	0.699577	Sox2	ENSMUST00000003154.6|Efna2|ENSMUSG00000003070.6|ephrin A2
mm10_v2_chr11_-_74590186_74590215	0.697287	Sox2	ENSMUST00000102521.1|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2
mm10_v2_chr19_+_10688744_10688818	0.695326	Sox2	ENSMUST00000087951.5|Vps37c|ENSMUSG00000048832.8|vacuolar protein sorting 37C (yeast)
mm10_v2_chr16_+_11405648_11405713	0.689382	Sox2	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr2_+_167932327_167932379	0.684936	Sox2	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr17_+_35059035_35059130	0.68445	Sox2	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr13_+_97241096_97241116	0.684444	Sox2	ENSMUST00000041623.7|Enc1|ENSMUSG00000041773.7|ectodermal-neural cortex 1
mm10_v2_chrX_-_53370470_53370502	0.682371	Sox2	ENSMUST00000096447.2|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1 	ENSMUST00000023836.3|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1
mm10_v2_chr10_-_22731336_22731447	0.680148	Sox2	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chr7_-_127875633_127875673	0.679993	Sox2	ENSMUST00000106261.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668 	ENSMUST00000144721.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668
mm10_v2_chr3_+_7503423_7503503	0.679956	Sox2	ENSMUST00000051064.3|Zc2hc1a|ENSMUSG00000043542.7|zinc finger, C2HC-type containing 1A
mm10_v2_chr8_+_31111816_31111891	0.679803	Sox2	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr5_+_21646033_21646057	0.67798	Sox2	ENSMUST00000095495.2|Armc10|ENSMUSG00000038525.10|armadillo repeat containing 10
mm10_v2_chr17_-_29007925_29007962	0.677717	Sox2	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr9_-_108578657_108578675	0.676877	Sox2	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr5_-_142817387_142817420	0.676807	Sox2	ENSMUST00000036253.6|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr4_+_152186054_152186134	0.676057	Sox2	ENSMUST00000167926.1|Acot7|ENSMUSG00000028937.8|acyl-CoA thioesterase 7
mm10_v2_chr4_+_152186179_152186206	0.675267	Sox2	ENSMUST00000030779.3|Acot7|ENSMUSG00000028937.8|acyl-CoA thioesterase 7
mm10_v2_chr10_+_17796256_17796339	0.673342	Sox2	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr2_+_68861433_68861510	0.672858	Sox2	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr10_-_92162753_92162765	0.666621	Sox2	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr7_+_28179469_28179535	0.665955	Sox2	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr17_+_37002610_37002670	0.66538	Sox2	ENSMUST00000173921.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57 	ENSMUST00000172580.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr11_+_115765420_115765466	0.665348	Sox2	ENSMUST00000093912.4|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000136720.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000103034.3|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000141871.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene
mm10_v2_chr9_+_102720287_102720336	0.664351	Sox2	ENSMUST00000130602.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr6_-_29212240_29212297	0.663776	Sox2	ENSMUST00000160878.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000078155.5|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr12_+_69296676_69296798	0.66337	Sox2	ENSMUST00000021362.4|Klhdc2|ENSMUSG00000020978.4|kelch domain containing 2
mm10_v2_chr3_+_131110350_131110471	0.662141	Sox2	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr11_+_62551676_62551735	0.661745	Sox2	ENSMUST00000136938.1|Ubb|ENSMUSG00000019505.7|ubiquitin B
mm10_v2_chr13_-_59694100_59694108	0.660358	Sox2	ENSMUST00000061597.5|4921517D22Rik|ENSMUSG00000049902.5|RIKEN cDNA 4921517D22 gene
mm10_v2_chr7_+_28180272_28180316	0.659039	Sox2	ENSMUST00000173223.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr8_+_12947935_12947962	0.657858	Sox2	ENSMUST00000110871.1|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr2_-_25983236_25983290	0.656303	Sox2	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr4_+_129513581_129513644	0.655905	Sox2	ENSMUST00000062356.6|Marcksl1|ENSMUSG00000047945.6|MARCKS-like 1
mm10_v2_chr12_-_83597140_83597177	0.655549	Sox2	ENSMUST00000048319.4|Zfyve1|ENSMUSG00000042628.7|zinc finger, FYVE domain containing 1
mm10_v2_chr10_-_32890462_32890462	0.6535	Sox2	ENSMUST00000092602.1|Nkain2|ENSMUSG00000069670.1|Na+/K+ transporting ATPase interacting 2
mm10_v2_chr14_-_33447142_33447179	0.652936	Sox2	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr11_-_115699461_115699534	0.652855	Sox2	ENSMUST00000106497.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr4_-_44167988_44168008	0.652237	Sox2	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr16_-_34573526_34573554	0.646027	Sox2	ENSMUST00000114961.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr2_+_84734050_84734107	0.645073	Sox2	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr14_-_26638183_26638183	0.643888	Sox2	ENSMUST00000166902.1|4930570N19Rik|ENSMUSG00000090861.1|RIKEN cDNA 4930570N19 gene
mm10_v2_chrX_+_153498202_153498232	0.642912	Sox2	ENSMUST00000060714.8|Ubqln2|ENSMUSG00000050148.8|ubiquilin 2
mm10_v2_chr8_+_71464910_71465000	0.637878	Sox2	ENSMUST00000048914.6|Mrpl34|ENSMUSG00000034880.6|mitochondrial ribosomal protein L34
mm10_v2_chr5_+_114568016_114568016	0.636448	Sox2	ENSMUST00000043650.7|Fam222a|ENSMUSG00000041930.7|family with sequence similarity 222, member A
mm10_v2_chr17_-_35121990_35122053	0.631168	Sox2	ENSMUST00000173915.1|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide 	ENSMUST00000172765.2|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide
mm10_v2_chr1_-_36558349_36558366	0.629473	Sox2	ENSMUST00000114991.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000114992.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr16_+_11066292_11066381	0.628306	Sox2	ENSMUST00000089011.4|Snn|ENSMUSG00000037972.6|stannin
mm10_v2_chr17_-_33760306_33760348	0.628303	Sox2	ENSMUST00000173860.1|Rab11b|ENSMUSG00000077450.6|RAB11B, member RAS oncogene family
mm10_v2_chr4_+_5724304_5724357	0.626662	Sox2	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr11_-_121229095_121229292	0.626061	Sox2	ENSMUST00000137299.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000169393.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr6_-_121003099_121003153	0.617974	Sox2	ENSMUST00000098457.2|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENSMUST00000150503.1|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm10_v2_chr1_+_42953106_42953164	0.617447	Sox2	ENSMUST00000179655.1|Gpr45|ENSMUSG00000096364.1|G protein-coupled receptor 45
mm10_v2_chr10_-_94035789_94035817	0.615824	Sox2	ENSMUST00000123201.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000119818.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr19_+_5740885_5740904	0.61485	Sox2	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr12_+_52699297_52699411	0.614747	Sox2	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr10_-_57532416_57532487	0.613608	Sox2	ENSMUST00000169122.1|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr2_+_27009936_27010082	0.613284	Sox2	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr18_+_80046854_80046904	0.612701	Sox2	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chrX_-_12128350_12128367	0.612012	Sox2	ENSMUST00000123004.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr5_-_33274966_33275010	0.611879	Sox2	ENSMUST00000079746.6|Ctbp1|ENSMUSG00000037373.9|C-terminal binding protein 1
mm10_v2_chr15_+_41830921_41831001	0.61012	Sox2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr7_+_91090697_91090727	0.606213	Sox2	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr8_+_108714644_108714644	0.605825	Sox2	ENSMUST00000043896.8|Zfhx3|ENSMUSG00000038872.8|zinc finger homeobox 3
mm10_v2_chrX_-_12128386_12128412	0.604346	Sox2	ENSMUST00000145872.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr17_-_46487641_46487682	0.603502	Sox2	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr6_-_29507946_29507974	0.602115	Sox2	ENSMUST00000101614.3|Kcp|ENSMUSG00000059022.8|kielin/chordin-like protein 	ENSMUST00000078112.6|Kcp|ENSMUSG00000059022.8|kielin/chordin-like protein
mm10_v2_chr9_+_59578192_59578337	0.602034	Sox2	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr5_-_24447587_24447854	0.597813	Sox2	ENSMUST00000127194.1|Tmub1|ENSMUSG00000028958.8|transmembrane and ubiquitin-like domain containing 1 	ENSMUST00000115033.1|Tmub1|ENSMUSG00000028958.8|transmembrane and ubiquitin-like domain containing 1 	ENSMUST00000123167.1|Tmub1|ENSMUSG00000028958.8|transmembrane and ubiquitin-like domain containing 1 	ENSMUST00000030799.8|Tmub1|ENSMUSG00000028958.8|transmembrane and ubiquitin-like domain containing 1
mm10_v2_chr6_-_136171722_136171849	0.594786	Sox2	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr3_-_89365233_89365253	0.59407	Sox2	ENSMUST00000070820.6|Dcst1|ENSMUSG00000042672.9|DC-STAMP domain containing 1
mm10_v2_chr7_-_141429433_141429491	0.593431	Sox2	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr10_+_69213084_69213228	0.593061	Sox2	ENSMUST00000163497.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000164212.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000067908.7|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1
mm10_v2_chr7_-_84409959_84410002	0.592812	Sox2	ENSMUST00000085077.3|Arnt2|ENSMUSG00000015709.8|aryl hydrocarbon receptor nuclear translocator 2
mm10_v2_chr11_-_58938851_58938923	0.591657	Sox2	ENSMUST00000094151.5|Rnf187|ENSMUSG00000020496.8|ring finger protein 187
mm10_v2_chrX_-_57392962_57392988	0.591654	Sox2	ENSMUST00000114730.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr14_-_55092277_55092324	0.59105	Sox2	ENSMUST00000036328.8|Zfhx2|ENSMUSG00000040721.8|zinc finger homeobox 2
mm10_v2_chr9_-_112187766_112187862	0.590631	Sox2	ENSMUST00000111872.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000164754.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr1_-_134235420_134235443	0.589208	Sox2	ENSMUST00000038191.6|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor 	ENSMUST00000086465.4|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr5_+_141856692_141856787	0.586853	Sox2	ENSMUST00000074546.6|Sdk1|ENSMUSG00000039683.10|sidekick homolog 1 (chicken)
mm10_v2_chr16_-_17125106_17125146	0.583985	Sox2	ENSMUST00000093336.6|2610318N02Rik|ENSMUSG00000049916.9|RIKEN cDNA 2610318N02 gene
mm10_v2_chr3_-_96058446_96058466	0.580558	Sox2	ENSMUST00000015891.5|Vps45|ENSMUSG00000015747.5|vacuolar protein sorting 45 (yeast)
mm10_v2_chrX_+_143518671_143518703	0.574308	Sox2	ENSMUST00000134402.1|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr13_+_43615950_43615991	0.573755	Sox2	ENSMUST00000161817.1|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr1_-_88702121_88702221	0.572898	Sox2	ENSMUST00000159814.1|Arl4c|ENSMUSG00000049866.6|ADP-ribosylation factor-like 4C
mm10_v2_chr11_-_98729374_98729435	0.572648	Sox2	ENSMUST00000126565.1|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000100500.2|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000017354.6|Med24|ENSMUSG00000017210.8|mediator complex subunit 24
mm10_v2_chr11_-_121229293_121229322	0.569465	Sox2	ENSMUST00000106115.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000038709.7|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000147490.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr4_-_136602641_136602760	0.566483	Sox2	ENSMUST00000105847.1|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A 	ENSMUST00000116273.2|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A
mm10_v2_chr4_+_32238950_32238964	0.565501	Sox2	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr11_+_6546899_6546941	0.563704	Sox2	ENSMUST00000159007.1|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr18_+_37489465_37489465	0.560903	Sox2	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr5_-_142905928_142905978	0.558965	Sox2	ENSMUST00000106216.2|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr11_-_114795888_114795903	0.558413	Sox2	ENSMUST00000000206.3|Btbd17|ENSMUSG00000000202.3|BTB (POZ) domain containing 17
mm10_v2_chr8_+_94977101_94977123	0.557696	Sox2	ENSMUST00000179619.1|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr2_-_73775341_73775378	0.554886	Sox2	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr8_-_4217459_4217503	0.553734	Sox2	ENSMUST00000176227.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr4_+_135855707_135855747	0.553568	Sox2	ENSMUST00000105853.3|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000097844.2|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000102544.2|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000126641.1|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10
mm10_v2_chr10_+_57486354_57486414	0.546994	Sox2	ENSMUST00000079833.4|Hsf2|ENSMUSG00000019878.7|heat shock factor 2
mm10_v2_chr7_+_91090728_91090751	0.546106	Sox2	ENSMUST00000074273.3|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chrX_+_166238901_166238914	0.545907	Sox2	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr19_-_46395722_46395756	0.543509	Sox2	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr7_-_98361310_98361328	0.542584	Sox2	ENSMUST00000165257.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr7_-_118705708_118705786	0.541568	Sox2	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr1_-_180813591_180813632	0.537508	Sox2	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr7_-_98361275_98361295	0.536548	Sox2	ENSMUST00000094161.4|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000164726.1|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000167405.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr2_+_27009926_27009935	0.535396	Sox2	ENSMUST00000114005.2|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114004.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114006.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114007.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr4_+_150281573_150281646	0.534856	Sox2	ENSMUST00000105682.2|Rere|ENSMUSG00000039852.10|arginine glutamic acid dipeptide (RE) repeats
mm10_v2_chr18_-_61536522_61536558	0.534689	Sox2	ENSMUST00000171629.1|Arhgef37|ENSMUSG00000045094.7|Rho guanine nucleotide exchange factor (GEF) 37
mm10_v2_chr9_+_109038565_109038644	0.534559	Sox2	ENSMUST00000112059.3|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000026737.5|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr13_+_60602182_60602231	0.534433	Sox2	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr19_+_8839298_8839346	0.533125	Sox2	ENSMUST00000160556.1|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr9_-_110624361_110624439	0.527919	Sox2	ENSMUST00000035069.9|Nradd|ENSMUSG00000032491.10|neurotrophin receptor associated death domain
mm10_v2_chr10_+_96616998_96617015	0.526137	Sox2	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr3_-_127225847_127225915	0.525648	Sox2	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr4_-_43045686_43045825	0.524971	Sox2	ENSMUST00000107956.1|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B 	ENSMUST00000107957.1|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr2_-_65567505_65567627	0.524386	Sox2	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr2_+_128967383_128967443	0.524365	Sox2	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr18_+_37725706_37725754	0.524028	Sox2	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr17_+_84956718_84956745	0.52326	Sox2	ENSMUST00000112305.3|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
mm10_v2_chr3_+_88716838_88716883	0.519771	Sox2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr9_-_112187898_112187938	0.517934	Sox2	ENSMUST00000178410.1|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000172380.3|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr9_-_65021645_65021717	0.517526	Sox2	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr11_-_68386974_68387012	0.516783	Sox2	ENSMUST00000135141.1|Ntn1|ENSMUSG00000020902.6|netrin 1
mm10_v2_chr7_-_19271797_19271823	0.513924	Sox2	ENSMUST00000032561.8|Vasp|ENSMUSG00000030403.8|vasodilator-stimulated phosphoprotein
mm10_v2_chr12_+_40446050_40446099	0.512719	Sox2	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr3_-_86999284_86999441	0.510173	Sox2	ENSMUST00000063869.5|Cd1d1|ENSMUSG00000028076.6|CD1d1 antigen 	ENSMUST00000029717.2|Cd1d1|ENSMUSG00000028076.6|CD1d1 antigen
mm10_v2_chr19_+_23619742_23619742	0.507965	Sox2	ENSMUST00000104916.2|Gm9493|ENSMUSG00000044424.3|predicted gene 9493
mm10_v2_chr5_+_34949435_34949504	0.507766	Sox2	ENSMUST00000030984.7|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr11_-_23633621_23633639	0.50755	Sox2	ENSMUST00000180260.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000141353.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000131612.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000109532.2|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene
mm10_v2_chr6_-_6882068_6882092	0.50654	Sox2	ENSMUST00000142635.1|Dlx5|ENSMUSG00000029755.9|distal-less homeobox 5 	ENSMUST00000052609.8|Dlx5|ENSMUSG00000029755.9|distal-less homeobox 5
mm10_v2_chr1_-_93101854_93101879	0.505159	Sox2	ENSMUST00000171796.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A 	ENSMUST00000171556.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr13_-_78196373_78196440	0.504093	Sox2	ENSMUST00000125176.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr15_-_36308956_36308956	0.503148	Sox2	ENSMUST00000090170.4|Rpl7a-ps3|ENSMUSG00000068579.4|ribosomal protein L7A, pseudogene 3
mm10_v2_chr10_-_94035705_94035769	0.500885	Sox2	ENSMUST00000118077.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000118205.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000047711.6|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr17_-_25273562_25273638	0.499755	Sox2	ENSMUST00000173621.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000172520.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr10_-_57532489_57532530	0.496699	Sox2	ENSMUST00000020027.4|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr5_-_98030727_98030765	0.494005	Sox2	ENSMUST00000031281.9|Antxr2|ENSMUSG00000029338.9|anthrax toxin receptor 2
mm10_v2_chr17_+_35866056_35866085	0.493875	Sox2	ENSMUST00000122899.1|Ppp1r18|ENSMUSG00000034595.11|protein phosphatase 1, regulatory subunit 18
mm10_v2_chr15_-_79658749_79658798	0.492899	Sox2	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr7_+_12881165_12881204	0.492393	Sox2	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr7_+_82175156_82175199	0.491357	Sox2	ENSMUST00000180243.1|Sh3gl3|ENSMUSG00000030638.7|SH3-domain GRB2-like 3
mm10_v2_chr4_+_138217235_138217310	0.489748	Sox2	ENSMUST00000130071.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr8_+_94810446_94810461	0.489503	Sox2	ENSMUST00000034232.1|Ccl17|ENSMUSG00000031780.1|chemokine (C-C motif) ligand 17
mm10_v2_chr5_-_142905816_142905832	0.487828	Sox2	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr4_-_132212060_132212130	0.487663	Sox2	ENSMUST00000085181.4|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr5_-_136198908_136198970	0.4846	Sox2	ENSMUST00000149151.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible) 	ENSMUST00000151786.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible)
mm10_v2_chr15_+_79659196_79659267	0.484376	Sox2	ENSMUST00000023064.7|Cby1|ENSMUSG00000022428.7|chibby homolog 1 (Drosophila)
mm10_v2_chr3_-_89998656_89998704	0.481833	Sox2	ENSMUST00000079724.4|Hax1|ENSMUSG00000027944.9|HCLS1 associated X-1
mm10_v2_chr9_+_65676517_65676556	0.481488	Sox2	ENSMUST00000153700.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2 	ENSMUST00000046490.7|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2
mm10_v2_chr18_+_35599219_35599269	0.479242	Sox2	ENSMUST00000115734.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr11_-_70220969_70221027	0.473207	Sox2	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr3_+_88716884_88716906	0.472701	Sox2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr17_-_25273534_25273557	0.471151	Sox2	ENSMUST00000174031.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr7_-_131614988_131614988	0.471016	Sox2	ENSMUST00000085365.5|Gm16477|ENSMUSG00000062758.6|predicted pseudogene 16477
mm10_v2_chr15_-_82354280_82354291	0.47064	Sox2	ENSMUST00000023085.5|Ndufa6|ENSMUSG00000022450.5|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm10_v2_chr2_-_6884940_6884957	0.470543	Sox2	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chrX_+_7728439_7728510	0.470169	Sox2	ENSMUST00000033489.7|Praf2|ENSMUSG00000031149.7|PRA1 domain family 2
mm10_v2_chrX_+_166238923_166239024	0.469851	Sox2	ENSMUST00000060210.7|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112233.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr9_-_44721383_44721484	0.467201	Sox2	ENSMUST00000148929.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1 	ENSMUST00000123406.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr19_-_46039621_46039662	0.466021	Sox2	ENSMUST00000056931.7|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr11_+_59662471_59662543	0.462961	Sox2	ENSMUST00000072031.6|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000116371.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000108751.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000066330.8|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein
mm10_v2_chr11_-_46312220_46312358	0.461265	Sox2	ENSMUST00000129474.1|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000093166.4|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000165599.2|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2
mm10_v2_chr11_-_106579111_106579141	0.461125	Sox2	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr2_-_173276144_173276189	0.46092	Sox2	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr4_-_126468580_126468653	0.460235	Sox2	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr7_-_6331235_6331290	0.45914	Sox2	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr11_-_99230998_99231019	0.453339	Sox2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chrX_-_104201126_104201185	0.448708	Sox2	ENSMUST00000056502.6|C77370|ENSMUSG00000046449.9|expressed sequence C77370 	ENSMUST00000118314.1|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr2_-_18048784_18048822	0.447808	Sox2	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr17_-_26069409_26069550	0.446177	Sox2	ENSMUST00000120691.1|Rab11fip3|ENSMUSG00000037098.11|RAB11 family interacting protein 3 (class II)
mm10_v2_chr8_+_87472805_87472822	0.445845	Sox2	ENSMUST00000180700.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000182174.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000181159.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr17_-_12916345_12916408	0.44413	Sox2	ENSMUST00000079121.3|Mrpl18|ENSMUSG00000057388.3|mitochondrial ribosomal protein L18
mm10_v2_chr7_+_126760591_126760599	0.444017	Sox2	ENSMUST00000091328.2|Mapk3|ENSMUSG00000063065.7|mitogen-activated protein kinase 3
mm10_v2_chr2_-_27475600_27475611	0.443282	Sox2	ENSMUST00000147736.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr2_+_180581220_180581304	0.441653	Sox2	ENSMUST00000169630.1|Mrgbp|ENSMUSG00000027569.9|MRG/MORF4L binding protein
mm10_v2_chr9_+_55208925_55208989	0.441277	Sox2	ENSMUST00000034859.8|Fbxo22|ENSMUSG00000032309.9|F-box protein 22
mm10_v2_chr5_-_138171216_138171246	0.439494	Sox2	ENSMUST00000147920.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr13_-_18031616_18031629	0.438263	Sox2	ENSMUST00000099736.2|Vdac3-ps1|ENSMUSG00000075053.2|voltage-dependent anion channel 3, pseudogene 1
mm10_v2_chr4_-_148152059_148152146	0.436723	Sox2	ENSMUST00000056965.5|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000168503.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000152098.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6
mm10_v2_chr5_-_112228900_112228929	0.436532	Sox2	ENSMUST00000182509.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr10_+_115569986_115570035	0.435681	Sox2	ENSMUST00000173620.1|A930009A15Rik|ENSMUSG00000092210.1|RIKEN cDNA A930009A15 gene
mm10_v2_chr4_+_154142363_154142383	0.435026	Sox2	ENSMUST00000030895.5|Wrap73|ENSMUSG00000029029.8|WD repeat containing, antisense to Trp73
mm10_v2_chr2_-_167631972_167632095	0.434892	Sox2	ENSMUST00000060645.6|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000140216.1|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000151365.1|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000109207.3|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1
mm10_v2_chr3_-_108210438_108210502	0.430848	Sox2	ENSMUST00000117784.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000119650.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000117409.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2
mm10_v2_chr4_-_116405986_116406120	0.42986	Sox2	ENSMUST00000123072.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000144281.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chr2_-_165898951_165899016	0.429344	Sox2	ENSMUST00000136842.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr11_-_69560186_69560213	0.427585	Sox2	ENSMUST00000004036.5|Efnb3|ENSMUSG00000003934.5|ephrin B3
mm10_v2_chrX_-_140543177_140543195	0.426941	Sox2	ENSMUST00000055738.5|Tsc22d3|ENSMUSG00000031431.7|TSC22 domain family, member 3
mm10_v2_chr6_+_125039760_125039859	0.424314	Sox2	ENSMUST00000140131.1|Ing4|ENSMUSG00000030330.9|inhibitor of growth family, member 4 	ENSMUST00000032480.7|Ing4|ENSMUSG00000030330.9|inhibitor of growth family, member 4
mm10_v2_chr15_-_100403243_100403270	0.423519	Sox2	ENSMUST00000124324.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chrX_-_94542037_94542143	0.422253	Sox2	ENSMUST00000026142.7|Maged1|ENSMUSG00000025151.10|melanoma antigen, family D, 1
mm10_v2_chr5_+_145083830_145083887	0.422051	Sox2	ENSMUST00000031625.8|Arpc1a|ENSMUSG00000029621.8|actin related protein 2/3 complex, subunit 1A
mm10_v2_chr4_-_63403330_63403354	0.421122	Sox2	ENSMUST00000035724.4|Akna|ENSMUSG00000039158.11|AT-hook transcription factor
mm10_v2_chr7_+_127470354_127470371	0.418797	Sox2	ENSMUST00000106292.1|Prr14|ENSMUSG00000030822.9|proline rich 14
mm10_v2_chr6_-_99028874_99028942	0.418398	Sox2	ENSMUST00000154163.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr1_-_16520067_16520095	0.416713	Sox2	ENSMUST00000131257.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000153966.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr11_+_101316200_101316275	0.415466	Sox2	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr2_-_6721606_6721629	0.415246	Sox2	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr3_+_90476121_90476220	0.414942	Sox2	ENSMUST00000001042.8|Ilf2|ENSMUSG00000001016.8|interleukin enhancer binding factor 2
mm10_v2_chr8_+_87472838_87472849	0.413273	Sox2	ENSMUST00000180806.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr2_-_6884975_6884996	0.413271	Sox2	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr4_+_40723084_40723117	0.412182	Sox2	ENSMUST00000149794.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr7_+_127233227_127233317	0.411901	Sox2	ENSMUST00000056232.6|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chr11_-_100613334_100613368	0.411545	Sox2	ENSMUST00000146840.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr2_-_26294550_26294561	0.411519	Sox2	ENSMUST00000057224.3|4932418E24Rik|ENSMUSG00000048038.6|RIKEN cDNA 4932418E24 gene
mm10_v2_chr13_+_4191163_4191200	0.408178	Sox2	ENSMUST00000021634.2|Akr1c13|ENSMUSG00000021213.5|aldo-keto reductase family 1, member C13
mm10_v2_chr19_+_8953826_8953856	0.403537	Sox2	ENSMUST00000096239.5|Tut1|ENSMUSG00000071645.5|terminal uridylyl transferase 1, U6 snRNA-specific
mm10_v2_chr15_+_27025386_27025386	0.40265	Sox2	ENSMUST00000169678.2|Gm6576|ENSMUSG00000090544.2|predicted gene 6576
mm10_v2_chr1_+_182409162_182409184	0.402615	Sox2	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chrX_-_57393020_57393040	0.402607	Sox2	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr7_-_43489967_43490075	0.402245	Sox2	ENSMUST00000107974.1|Iglon5|ENSMUSG00000013367.4|IgLON family member 5
mm10_v2_chr16_-_38522662_38522683	0.401967	Sox2	ENSMUST00000002925.5|Timmdc1|ENSMUSG00000002846.9|translocase of inner mitochondrial membrane domain containing 1
mm10_v2_chr10_+_75060885_75060901	0.399308	Sox2	ENSMUST00000164107.1|Bcr|ENSMUSG00000009681.9|breakpoint cluster region
mm10_v2_chr6_-_56362356_56362519	0.398918	Sox2	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr5_+_19907502_19907551	0.396895	Sox2	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr9_+_61373482_61373535	0.396197	Sox2	ENSMUST00000160541.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161207.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159630.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chrX_+_74270812_74270979	0.395688	Sox2	ENSMUST00000008826.7|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000151702.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000074085.5|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000135690.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10
mm10_v2_chr12_-_84946921_84946923	0.393827	Sox2	ENSMUST00000169161.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chr3_-_158016419_158016453	0.391899	Sox2	ENSMUST00000127778.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr16_-_97851796_97851853	0.390894	Sox2	ENSMUST00000121584.1|Prdm15|ENSMUSG00000014039.11|PR domain containing 15
mm10_v2_chrX_-_7899220_7899271	0.389992	Sox2	ENSMUST00000033497.2|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr4_-_120815703_120815761	0.389126	Sox2	ENSMUST00000120779.1|Nfyc|ENSMUSG00000032897.11|nuclear transcription factor-Y gamma
mm10_v2_chr4_-_75278246_75278338	0.388091	Sox2	ENSMUST00000030103.8|Tmem261|ENSMUSG00000028398.8|transmembrane protein 261
mm10_v2_chr16_+_17451981_17452034	0.385486	Sox2	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr11_+_32533290_32533305	0.384366	Sox2	ENSMUST00000102821.3|Stk10|ENSMUSG00000020272.8|serine/threonine kinase 10
mm10_v2_chr16_-_17911303_17911354	0.379757	Sox2	ENSMUST00000003621.8|Dgcr14|ENSMUSG00000003527.8|DiGeorge syndrome critical region gene 14
mm10_v2_chr15_+_75940952_75941015	0.379016	Sox2	ENSMUST00000037260.6|Zfp623|ENSMUSG00000050846.8|zinc finger protein 623
mm10_v2_chr7_-_105574324_105574402	0.378168	Sox2	ENSMUST00000081165.7|Apbb1|ENSMUSG00000037032.9|amyloid beta (A4) precursor protein-binding, family B, member 1
mm10_v2_chr2_-_52676571_52676588	0.377915	Sox2	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr14_+_70554056_70554056	0.377315	Sox2	ENSMUST00000022691.7|Hr|ENSMUSG00000022096.8|hairless
mm10_v2_chr4_+_86053887_86053987	0.376704	Sox2	ENSMUST00000107178.2|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000048885.5|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000141889.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000120678.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1
mm10_v2_chr1_-_136260873_136260931	0.376324	Sox2	ENSMUST00000086395.5|Gpr25|ENSMUSG00000052759.6|G protein-coupled receptor 25
mm10_v2_chr7_+_141392164_141392213	0.375615	Sox2	ENSMUST00000026576.4|Taldo1|ENSMUSG00000025503.4|transaldolase 1
mm10_v2_chr10_-_81060134_81060204	0.375494	Sox2	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr19_-_41848076_41848132	0.373702	Sox2	ENSMUST00000059231.2|Frat2|ENSMUSG00000047604.2|frequently rearranged in advanced T cell lymphomas 2
mm10_v2_chr4_+_40722912_40723001	0.371944	Sox2	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr5_-_38684743_38684826	0.370301	Sox2	ENSMUST00000057258.4|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000178760.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000179555.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000180214.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B
mm10_v2_chr8_+_36094828_36094868	0.369627	Sox2	ENSMUST00000110492.1|D8Ertd82e|ENSMUSG00000050271.6|DNA segment, Chr 8, ERATO Doi 82, expressed
mm10_v2_chr19_+_26753588_26753603	0.368061	Sox2	ENSMUST00000177116.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr2_-_131352857_131352889	0.367052	Sox2	ENSMUST00000059372.4|Rnf24|ENSMUSG00000048911.9|ring finger protein 24
mm10_v2_chr6_-_99666762_99666786	0.366829	Sox2	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chrX_-_104201099_104201117	0.366404	Sox2	ENSMUST00000087879.4|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr3_-_116968969_116969004	0.36607	Sox2	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr9_+_3335470_3335501	0.365726	Sox2	ENSMUST00000053407.5|Alkbh8|ENSMUSG00000025899.7|alkB, alkylation repair homolog 8 (E. coli)
mm10_v2_chr3_+_61364507_61364633	0.365476	Sox2	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chr3_-_127225917_127225959	0.364289	Sox2	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr11_-_107470699_107470726	0.363342	Sox2	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr9_-_107872403_107872422	0.362907	Sox2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr16_-_3908639_3908689	0.361994	Sox2	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr19_+_6950746_6950767	0.361404	Sox2	ENSMUST00000145463.1|Bad|ENSMUSG00000024959.7|BCL2-associated agonist of cell death
mm10_v2_chr3_-_150073620_150073620	0.360054	Sox2	ENSMUST00000057740.5|Rpsa-ps10|ENSMUSG00000047676.5|ribosomal protein SA, pseudogene 10
mm10_v2_chrX_+_7899350_7899362	0.359864	Sox2	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chr5_-_139484420_139484473	0.359047	Sox2	ENSMUST00000150992.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr6_+_34598500_34598529	0.351867	Sox2	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr11_-_76763550_76763582	0.350537	Sox2	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr4_+_141010644_141010696	0.35005	Sox2	ENSMUST00000071977.8|Mfap2|ENSMUSG00000060572.11|microfibrillar-associated protein 2
mm10_v2_chr9_+_4383535_4383535	0.350049	Sox2	ENSMUST00000047173.9|Msantd4|ENSMUSG00000041124.10|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
mm10_v2_chr10_+_127063527_127063538	0.349892	Sox2	ENSMUST00000006911.5|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr14_-_5961745_5961745	0.347368	Sox2	ENSMUST00000163885.1|Gm3248|ENSMUSG00000091275.1|predicted gene 3248
mm10_v2_chr14_-_6889962_6889962	0.34705	Sox2	ENSMUST00000171906.1|Gm3667|ENSMUSG00000090691.2|predicted gene 3667
mm10_v2_chr3_-_127837419_127837505	0.345925	Sox2	ENSMUST00000051737.6|Ap1ar|ENSMUSG00000074238.2|adaptor-related protein complex 1 associated regulatory protein
mm10_v2_chr15_+_100154379_100154411	0.345874	Sox2	ENSMUST00000023768.6|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila) 	ENSMUST00000108971.2|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr3_-_89338005_89338066	0.345335	Sox2	ENSMUST00000029674.7|Efna4|ENSMUSG00000028040.7|ephrin A4
mm10_v2_chr6_+_17749170_17749265	0.344233	Sox2	ENSMUST00000053148.7|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000115417.3|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr1_-_16520106_16520133	0.343546	Sox2	ENSMUST00000162435.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr7_+_24507122_24507139	0.340607	Sox2	ENSMUST00000177205.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr13_-_47043116_47043343	0.340038	Sox2	ENSMUST00000110118.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000124948.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000021806.3|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000136864.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase
mm10_v2_chr17_+_35135695_35135781	0.336637	Sox2	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr4_+_137862270_137862321	0.335756	Sox2	ENSMUST00000130407.1|Ece1|ENSMUSG00000057530.8|endothelin converting enzyme 1
mm10_v2_chr1_+_86526688_86526736	0.333777	Sox2	ENSMUST00000045897.8|Ptma|ENSMUSG00000026238.8|prothymosin alpha
mm10_v2_chr15_+_100038635_100038669	0.333705	Sox2	ENSMUST00000100203.3|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr17_+_24886643_24886765	0.333656	Sox2	ENSMUST00000117890.1|Spsb3|ENSMUSG00000024160.10|splA/ryanodine receptor domain and SOCS box containing 3 	ENSMUST00000168265.1|Spsb3|ENSMUSG00000024160.10|splA/ryanodine receptor domain and SOCS box containing 3 	ENSMUST00000120943.1|Spsb3|ENSMUSG00000024160.10|splA/ryanodine receptor domain and SOCS box containing 3 	ENSMUST00000068508.6|Spsb3|ENSMUSG00000024160.10|splA/ryanodine receptor domain and SOCS box containing 3 	ENSMUST00000119829.1|Spsb3|ENSMUSG00000024160.10|splA/ryanodine receptor domain and SOCS box containing 3
mm10_v2_chr6_+_15185456_15185563	0.332147	Sox2	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr11_+_5788480_5788560	0.332054	Sox2	ENSMUST00000109845.1|Dbnl|ENSMUSG00000020476.8|drebrin-like 	ENSMUST00000020769.7|Dbnl|ENSMUSG00000020476.8|drebrin-like 	ENSMUST00000102928.4|Dbnl|ENSMUSG00000020476.8|drebrin-like
mm10_v2_chr1_-_93101825_93101849	0.332003	Sox2	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr2_-_86347764_86347764	0.331756	Sox2	ENSMUST00000099894.2|Olfr1055|ENSMUSG00000075189.2|olfactory receptor 1055
mm10_v2_chr1_+_15287259_15287259	0.330867	Sox2	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr11_+_6389442_6389471	0.330604	Sox2	ENSMUST00000109786.1|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr3_-_95995662_95995692	0.330567	Sox2	ENSMUST00000123006.1|Plekho1|ENSMUSG00000015745.3|pleckstrin homology domain containing, family O member 1
mm10_v2_chrX_-_59567348_59567472	0.330114	Sox2	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr9_-_66069702_66069741	0.328651	Sox2	ENSMUST00000044711.5|Snx22|ENSMUSG00000039452.5|sorting nexin 22
mm10_v2_chr10_-_117063764_117063814	0.328542	Sox2	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr16_-_52296924_52296924	0.328496	Sox2	ENSMUST00000167115.1|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr2_-_121807024_121807087	0.327906	Sox2	ENSMUST00000138157.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr5_-_125389915_125390055	0.326504	Sox2	ENSMUST00000136312.1|Ubc|ENSMUSG00000008348.9|ubiquitin C
mm10_v2_chr3_-_146781351_146781431	0.323376	Sox2	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr10_+_37139558_37139558	0.322848	Sox2	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr17_-_25273366_25273383	0.322149	Sox2	ENSMUST00000173084.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr8_-_124663368_124663383	0.32185	Sox2	ENSMUST00000034464.6|2310022B05Rik|ENSMUSG00000031983.6|RIKEN cDNA 2310022B05 gene
mm10_v2_chr4_+_102421518_102421573	0.318935	Sox2	ENSMUST00000106904.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr17_-_34121944_34121988	0.318663	Sox2	ENSMUST00000151986.1|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr11_+_6389330_6389397	0.31857	Sox2	ENSMUST00000012612.4|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr2_-_152951547_152951608	0.316009	Sox2	ENSMUST00000037715.6|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr16_+_78301673_78301760	0.315994	Sox2	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr15_+_81872309_81872309	0.315987	Sox2	ENSMUST00000023116.6|Aco2|ENSMUSG00000022477.6|aconitase 2, mitochondrial
mm10_v2_chr11_-_77489666_77489687	0.315335	Sox2	ENSMUST00000037593.7|Ankrd13b|ENSMUSG00000037907.10|ankyrin repeat domain 13b 	ENSMUST00000092892.3|Ankrd13b|ENSMUSG00000037907.10|ankyrin repeat domain 13b
mm10_v2_chr9_-_110117379_110117445	0.315262	Sox2	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr4_+_101647763_101647797	0.31522	Sox2	ENSMUST00000106927.1|Leprot|ENSMUSG00000035212.8|leptin receptor overlapping transcript
mm10_v2_chr8_-_4216912_4217003	0.311619	Sox2	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr6_+_86527312_86527401	0.310068	Sox2	ENSMUST00000181928.1|1600020E01Rik|ENSMUSG00000097048.1|RIKEN cDNA 1600020E01 gene
mm10_v2_chr19_-_7206234_7206316	0.309269	Sox2	ENSMUST00000123594.1|Otub1|ENSMUSG00000024767.5|OTU domain, ubiquitin aldehyde binding 1 	ENSMUST00000025679.4|Otub1|ENSMUSG00000024767.5|OTU domain, ubiquitin aldehyde binding 1
mm10_v2_chr3_+_31902666_31902703	0.306657	Sox2	ENSMUST00000119970.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2 	ENSMUST00000178668.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm10_v2_chr11_+_64979025_64979110	0.306269	Sox2	ENSMUST00000071891.5|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000108697.1|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000101049.2|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli)
mm10_v2_chr12_-_112674193_112674276	0.305748	Sox2	ENSMUST00000001780.3|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr19_-_4615647_4615700	0.305359	Sox2	ENSMUST00000113822.2|Lrfn4|ENSMUSG00000045045.7|leucine rich repeat and fibronectin type III domain containing 4
mm10_v2_chr11_-_68957445_68957485	0.304921	Sox2	ENSMUST00000108671.1|Arhgef15|ENSMUSG00000052921.7|Rho guanine nucleotide exchange factor (GEF) 15
mm10_v2_chr3_-_92083132_92083147	0.304383	Sox2	ENSMUST00000058150.6|Lor|ENSMUSG00000043165.6|loricrin
mm10_v2_chr10_+_74967164_74967203	0.303346	Sox2	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr15_-_36794498_36794547	0.301827	Sox2	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr9_-_66124872_66124886	0.301158	Sox2	ENSMUST00000034946.8|Snx1|ENSMUSG00000032382.8|sorting nexin 1
mm10_v2_chr13_+_65278839_65278903	0.301094	Sox2	ENSMUST00000155732.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr2_-_7396192_7396241	0.300446	Sox2	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr11_-_54787597_54787711	0.300069	Sox2	ENSMUST00000153209.1|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2 	ENSMUST00000064104.6|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2
mm10_v2_chr17_-_35704000_35704139	0.300024	Sox2	ENSMUST00000097333.3|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000003628.6|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr9_+_90162978_90163037	0.299572	Sox2	ENSMUST00000113060.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm10_v2_chr9_+_61373608_61373672	0.299125	Sox2	ENSMUST00000161689.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr9_-_105495037_105495117	0.298965	Sox2	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr3_+_68572245_68572392	0.298029	Sox2	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr9_-_75409352_75409383	0.297402	Sox2	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr13_+_40886758_40886818	0.293323	Sox2	ENSMUST00000069958.7|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr15_+_88751649_88751661	0.292807	Sox2	ENSMUST00000041297.8|Zbed4|ENSMUSG00000034333.9|zinc finger, BED domain containing 4
mm10_v2_chr13_-_54687696_54687809	0.291579	Sox2	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr9_-_57765845_57765876	0.291394	Sox2	ENSMUST00000065330.6|Clk3|ENSMUSG00000032316.7|CDC-like kinase 3
mm10_v2_chr10_+_89873497_89873672	0.290042	Sox2	ENSMUST00000183156.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182936.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000099368.4|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr18_-_6516089_6516108	0.289408	Sox2	ENSMUST00000115870.2|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
mm10_v2_chr8_-_36249292_36249516	0.288745	Sox2	ENSMUST00000065297.5|Lonrf1|ENSMUSG00000039633.6|LON peptidase N-terminal domain and ring finger 1
mm10_v2_chr1_-_136346074_136346145	0.28816	Sox2	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr10_-_61452658_61452813	0.287493	Sox2	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr2_-_45110241_45110265	0.286685	Sox2	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr2_+_160731258_160731310	0.285638	Sox2	ENSMUST00000103115.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr1_-_34843050_34843065	0.283172	Sox2	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr15_+_86058727_86058793	0.279696	Sox2	ENSMUST00000138134.1|Gramd4|ENSMUSG00000035900.12|GRAM domain containing 4
mm10_v2_chr18_+_36793918_36793937	0.278626	Sox2	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr4_-_129696579_129696620	0.278579	Sox2	ENSMUST00000137640.1|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr9_+_56041857_56041880	0.277801	Sox2	ENSMUST00000114276.2|Rcn2|ENSMUSG00000032320.7|reticulocalbin 2
mm10_v2_chr2_+_156065738_156065760	0.277483	Sox2	ENSMUST00000137966.1|Spag4|ENSMUSG00000038180.5|sperm associated antigen 4
mm10_v2_chr5_+_143548700_143548756	0.277168	Sox2	ENSMUST00000169329.1|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000067145.5|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000119488.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A 	ENSMUST00000118121.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A
mm10_v2_chr5_+_108065696_108065738	0.274753	Sox2	ENSMUST00000172045.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr2_-_114052804_114052887	0.273338	Sox2	ENSMUST00000090269.6|Actc1|ENSMUSG00000068614.7|actin, alpha, cardiac muscle 1
mm10_v2_chr5_-_73256555_73256636	0.273068	Sox2	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr16_-_8672145_8672161	0.270913	Sox2	ENSMUST00000008537.8|Carhsp1|ENSMUSG00000008393.8|calcium regulated heat stable protein 1
mm10_v2_chr4_-_114987220_114987256	0.269582	Sox2	ENSMUST00000030491.8|Cmpk1|ENSMUSG00000028719.8|cytidine monophosphate (UMP-CMP) kinase 1
mm10_v2_chr10_-_128645965_128645991	0.269231	Sox2	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr5_-_8622855_8622952	0.268528	Sox2	ENSMUST00000047485.8|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B 	ENSMUST00000115378.1|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B
mm10_v2_chr2_-_152951456_152951540	0.268494	Sox2	ENSMUST00000123121.2|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr10_+_82859198_82859217	0.265688	Sox2	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr15_+_102326116_102326152	0.265215	Sox2	ENSMUST00000166658.1|Pfdn5|ENSMUSG00000001289.6|prefoldin 5 	ENSMUST00000062492.4|Pfdn5|ENSMUSG00000001289.6|prefoldin 5
mm10_v2_chr2_-_180042401_180042438	0.263441	Sox2	ENSMUST00000029082.8|Psma7|ENSMUSG00000027566.8|proteasome (prosome, macropain) subunit, alpha type 7
mm10_v2_chr2_-_131179985_131180092	0.262872	Sox2	ENSMUST00000089510.3|Cenpb|ENSMUSG00000068267.4|centromere protein B
mm10_v2_chr12_-_21417526_21417588	0.262715	Sox2	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr6_-_47594967_47595047	0.262337	Sox2	ENSMUST00000081721.6|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114618.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114616.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila)
mm10_v2_chr1_-_64122256_64122321	0.260942	Sox2	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr11_-_62789445_62789478	0.260353	Sox2	ENSMUST00000054654.6|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr2_+_18672384_18672482	0.259739	Sox2	ENSMUST00000171845.1|Commd3|ENSMUSG00000051154.5|COMM domain containing 3 	ENSMUST00000061158.4|Commd3|ENSMUSG00000051154.5|COMM domain containing 3
mm10_v2_chr8_-_109962127_109962213	0.259087	Sox2	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chr10_+_127063599_127063655	0.258993	Sox2	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr17_+_32506446_32506473	0.257092	Sox2	ENSMUST00000165999.1|Cyp4f17|ENSMUSG00000091586.1|cytochrome P450, family 4, subfamily f, polypeptide 17
mm10_v2_chr3_-_144205165_144205220	0.256596	Sox2	ENSMUST00000120539.1|Lmo4|ENSMUSG00000028266.11|LIM domain only 4
mm10_v2_chr9_+_45430293_45430379	0.255871	Sox2	ENSMUST00000034592.8|Dscaml1|ENSMUSG00000032087.9|Down syndrome cell adhesion molecule like 1
mm10_v2_chrX_+_162901226_162901261	0.255697	Sox2	ENSMUST00000101095.2|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr17_+_74338943_74338987	0.255388	Sox2	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr10_+_80053488_80053570	0.255167	Sox2	ENSMUST00000105372.1|Gpx4|ENSMUSG00000075706.4|glutathione peroxidase 4
mm10_v2_chr13_-_95618442_95618475	0.253704	Sox2	ENSMUST00000059193.5|F2r|ENSMUSG00000048376.5|coagulation factor II (thrombin) receptor
mm10_v2_chr8_-_40634750_40634775	0.253351	Sox2	ENSMUST00000173957.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr11_-_62789402_62789443	0.253316	Sox2	ENSMUST00000108705.1|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr9_+_90163057_90163101	0.252715	Sox2	ENSMUST00000113059.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 	ENSMUST00000167122.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm10_v2_chr7_-_34654342_34654398	0.251995	Sox2	ENSMUST00000108069.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr11_+_60699718_60699750	0.251611	Sox2	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr13_+_9276477_9276620	0.251577	Sox2	ENSMUST00000174552.1|Dip2c|ENSMUSG00000048264.9|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm10_v2_chr6_+_54039935_54040039	0.251494	Sox2	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr15_-_96642883_96642984	0.251377	Sox2	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr2_-_140671462_140671476	0.250682	Sox2	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr9_+_96259246_96259261	0.250178	Sox2	ENSMUST00000179065.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000165768.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr18_+_67562387_67562387	0.249818	Sox2	ENSMUST00000163749.1|Gm17669|ENSMUSG00000091695.1|predicted gene, 17669
mm10_v2_chr14_-_7568566_7568566	0.248741	Sox2	ENSMUST00000163790.1|Gm3558|ENSMUSG00000079364.3|predicted gene 3558
mm10_v2_chr2_-_140671400_140671427	0.247374	Sox2	ENSMUST00000056760.3|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr1_-_54194048_54194048	0.247325	Sox2	ENSMUST00000120904.1|Hecw2|ENSMUSG00000042807.9|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chr2_-_121806988_121807018	0.247294	Sox2	ENSMUST00000110592.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr10_+_40349265_40349387	0.245826	Sox2	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr6_+_70726430_70726472	0.245238	Sox2	ENSMUST00000103410.1|Igkc|ENSMUSG00000076609.1|immunoglobulin kappa constant
mm10_v2_chr7_+_12834743_12834811	0.24482	Sox2	ENSMUST00000004614.8|Zfp110|ENSMUSG00000058638.7|zinc finger protein 110
mm10_v2_chr7_-_29505447_29505473	0.243513	Sox2	ENSMUST00000183096.1|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3 	ENSMUST00000085809.4|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3
mm10_v2_chr1_-_135375233_135375245	0.24276	Sox2	ENSMUST00000041240.3|Shisa4|ENSMUSG00000041889.7|shisa homolog 4 (Xenopus laevis)
mm10_v2_chr15_+_59648644_59648687	0.242648	Sox2	ENSMUST00000118228.1|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr4_-_44167580_44167608	0.242034	Sox2	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr9_+_69989466_69989539	0.241055	Sox2	ENSMUST00000034754.5|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000085393.6|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000117450.1|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2
mm10_v2_chr17_+_35001282_35001347	0.240959	Sox2	ENSMUST00000174260.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr17_+_43801823_43801863	0.239539	Sox2	ENSMUST00000044895.5|Rcan2|ENSMUSG00000039601.9|regulator of calcineurin 2
mm10_v2_chr17_-_33760451_33760530	0.239389	Sox2	ENSMUST00000057373.7|Rab11b|ENSMUSG00000077450.6|RAB11B, member RAS oncogene family
mm10_v2_chr6_-_99266494_99266540	0.238618	Sox2	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr9_+_55209190_55209297	0.237154	Sox2	ENSMUST00000146201.1|Fbxo22|ENSMUSG00000032309.9|F-box protein 22
mm10_v2_chr18_+_68300351_68300422	0.237137	Sox2	ENSMUST00000009679.4|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000131075.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000025427.7|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000139111.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase
mm10_v2_chr9_-_51963533_51963563	0.236954	Sox2	ENSMUST00000034552.6|Fdx1|ENSMUSG00000032051.8|ferredoxin 1
mm10_v2_chr6_+_34598530_34598587	0.23548	Sox2	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr11_+_3289168_3289281	0.234099	Sox2	ENSMUST00000134089.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr19_+_5041337_5041416	0.232726	Sox2	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr19_-_40588374_40588426	0.231851	Sox2	ENSMUST00000175932.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000176955.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000149476.2|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr15_+_27466647_27466696	0.231768	Sox2	ENSMUST00000022875.6|Ank|ENSMUSG00000022265.6|progressive ankylosis
mm10_v2_chr6_-_49264014_49264060	0.231142	Sox2	ENSMUST00000031841.7|Tra2a|ENSMUSG00000029817.9|transformer 2 alpha homolog (Drosophila)
mm10_v2_chr6_-_52012476_52012551	0.230514	Sox2	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr16_+_18248866_18248919	0.230062	Sox2	ENSMUST00000115640.1|Trmt2a|ENSMUSG00000022721.12|TRM2 tRNA methyltransferase 2A 	ENSMUST00000140206.1|Trmt2a|ENSMUSG00000022721.12|TRM2 tRNA methyltransferase 2A
mm10_v2_chr1_-_168431502_168431513	0.229823	Sox2	ENSMUST00000064438.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr9_-_72111755_72111821	0.229821	Sox2	ENSMUST00000183492.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184523.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000034755.6|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr1_+_75546449_75546514	0.22818	Sox2	ENSMUST00000150142.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr12_+_19954505_19954505	0.225898	Sox2	ENSMUST00000179133.1|Gm21863|ENSMUSG00000095470.1|predicted gene, 21863
mm10_v2_chr12_-_21417591_21417637	0.225417	Sox2	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chrX_+_162901762_162901870	0.224154	Sox2	ENSMUST00000112302.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2 	ENSMUST00000112301.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr7_-_19861299_19861299	0.223988	Sox2	ENSMUST00000014830.7|Ceacam16|ENSMUSG00000014686.7|carcinoembryonic antigen-related cell adhesion molecule 16
mm10_v2_chr10_-_49788743_49788769	0.223889	Sox2	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr10_+_76449074_76449093	0.223675	Sox2	ENSMUST00000092406.5|2610028H24Rik|ENSMUSG00000009114.11|RIKEN cDNA 2610028H24 gene
mm10_v2_chr4_+_136284708_136284775	0.223523	Sox2	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr11_+_3895223_3895310	0.219675	Sox2	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr10_+_80826656_80826693	0.219355	Sox2	ENSMUST00000060987.8|Oaz1|ENSMUSG00000035242.9|ornithine decarboxylase antizyme 1 	ENSMUST00000177850.1|Oaz1|ENSMUSG00000035242.9|ornithine decarboxylase antizyme 1 	ENSMUST00000180036.1|Oaz1|ENSMUSG00000035242.9|ornithine decarboxylase antizyme 1 	ENSMUST00000179172.1|Oaz1|ENSMUSG00000035242.9|ornithine decarboxylase antizyme 1
mm10_v2_chr1_+_155158703_155158776	0.217989	Sox2	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr8_-_84773381_84773427	0.217506	Sox2	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr2_-_60881360_60881491	0.21681	Sox2	ENSMUST00000164147.1|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1 	ENSMUST00000112509.1|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr18_+_76242135_76242174	0.216064	Sox2	ENSMUST00000172198.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr7_+_24134148_24134184	0.215772	Sox2	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr14_+_25607797_25607838	0.215151	Sox2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr3_+_53463666_53463681	0.21398	Sox2	ENSMUST00000058577.4|Proser1|ENSMUSG00000049504.11|proline and serine rich 1
mm10_v2_chr4_-_149307506_149307703	0.212928	Sox2	ENSMUST00000055647.8|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000030806.5|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000060537.6|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B
mm10_v2_chr6_-_50382831_50382847	0.212639	Sox2	ENSMUST00000114468.2|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr3_+_138443085_138443176	0.21153	Sox2	ENSMUST00000005964.2|Adh5|ENSMUSG00000028138.2|alcohol dehydrogenase 5 (class III), chi polypeptide
mm10_v2_chr6_-_86733268_86733394	0.21118	Sox2	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr6_-_50261743_50261788	0.209249	Sox2	ENSMUST00000101405.3|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human) 	ENSMUST00000165099.1|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human) 	ENSMUST00000170142.1|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human)
mm10_v2_chr17_-_46890405_46890405	0.209197	Sox2	ENSMUST00000086675.3|A330017A19Rik|ENSMUSG00000073388.2|RIKEN cDNA A330017A19 gene
mm10_v2_chr9_+_20643290_20643342	0.206474	Sox2	ENSMUST00000129414.2|Ubl5|ENSMUSG00000084786.3|ubiquitin-like 5
mm10_v2_chr13_-_58402103_58402149	0.205956	Sox2	ENSMUST00000176305.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176558.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176849.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K
mm10_v2_chrX_+_112600526_112600526	0.20466	Sox2	ENSMUST00000113409.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr4_-_155863362_155863362	0.203466	Sox2	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr11_-_98400393_98400446	0.203298	Sox2	ENSMUST00000128897.1|Pgap3|ENSMUSG00000038208.7|post-GPI attachment to proteins 3
mm10_v2_chr11_-_6444352_6444443	0.202539	Sox2	ENSMUST00000093346.5|H2afv|ENSMUSG00000041126.10|H2A histone family, member V 	ENSMUST00000109737.2|H2afv|ENSMUSG00000041126.10|H2A histone family, member V
mm10_v2_chr13_-_9764865_9764941	0.199806	Sox2	ENSMUST00000128658.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr18_+_82475133_82475162	0.199667	Sox2	ENSMUST00000091789.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114676.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000047865.7|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr13_-_99412816_99412864	0.199662	Sox2	ENSMUST00000180808.1|6430562O15Rik|ENSMUSG00000097828.1|RIKEN cDNA 6430562O15 gene
mm10_v2_chr5_+_115429944_115429997	0.198444	Sox2	ENSMUST00000067168.5|Msi1|ENSMUSG00000054256.5|musashi RNA-binding protein 1
mm10_v2_chr4_-_44167905_44167976	0.198125	Sox2	ENSMUST00000102934.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr8_+_62951361_62951498	0.197595	Sox2	ENSMUST00000119068.1|Spock3|ENSMUSG00000054162.9|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm10_v2_chr8_+_106415319_106415396	0.197484	Sox2	ENSMUST00000034382.7|Zfp90|ENSMUSG00000031907.8|zinc finger protein 90
mm10_v2_chr9_+_61373219_61373438	0.197434	Sox2	ENSMUST00000162583.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161993.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160882.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160724.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000162973.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159050.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr5_-_122988533_122988705	0.197231	Sox2	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr5_-_137786681_137786715	0.195515	Sox2	ENSMUST00000132726.1|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr4_+_152096719_152096782	0.194803	Sox2	ENSMUST00000105661.3|Plekhg5|ENSMUSG00000039713.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 5 	ENSMUST00000084115.3|Plekhg5|ENSMUSG00000039713.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm10_v2_chr14_-_62456286_62456289	0.194682	Sox2	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr1_-_30949756_30949770	0.192191	Sox2	ENSMUST00000076587.3|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1 	ENSMUST00000027232.7|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1
mm10_v2_chr10_-_30655859_30655868	0.190772	Sox2	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr12_-_21417356_21417436	0.187297	Sox2	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr17_-_15375969_15375983	0.187096	Sox2	ENSMUST00000014917.7|Dll1|ENSMUSG00000014773.7|delta-like 1 (Drosophila)
mm10_v2_chr9_-_45906369_45906437	0.18596	Sox2	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr3_+_88142536_88142572	0.185719	Sox2	ENSMUST00000107558.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000107559.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr17_+_26252915_26252983	0.184283	Sox2	ENSMUST00000114976.2|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like 	ENSMUST00000140427.1|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like 	ENSMUST00000119928.1|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like
mm10_v2_chr2_+_24949747_24949801	0.183216	Sox2	ENSMUST00000028350.3|Zmynd19|ENSMUSG00000026974.6|zinc finger, MYND domain containing 19
mm10_v2_chr15_-_98534221_98534305	0.181941	Sox2	ENSMUST00000116400.2|Kansl2|ENSMUSG00000022992.10|KAT8 regulatory NSL complex subunit 2 	ENSMUST00000023727.10|Kansl2|ENSMUSG00000022992.10|KAT8 regulatory NSL complex subunit 2
mm10_v2_chr16_+_18348181_18348274	0.181604	Sox2	ENSMUST00000115614.2|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome 	ENSMUST00000115613.1|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome 	ENSMUST00000090103.3|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm10_v2_chr14_+_52197502_52197518	0.181227	Sox2	ENSMUST00000180857.1|Gm26590|ENSMUSG00000097533.1|predicted gene, 26590
mm10_v2_chr11_-_106750628_106750660	0.180239	Sox2	ENSMUST00000068021.2|Pecam1|ENSMUSG00000020717.13|platelet/endothelial cell adhesion molecule 1
mm10_v2_chr15_-_37007382_37007402	0.17972	Sox2	ENSMUST00000078976.7|Zfp706|ENSMUSG00000062397.7|zinc finger protein 706
mm10_v2_chr5_+_143817786_143817818	0.178953	Sox2	ENSMUST00000100487.4|Eif2ak1|ENSMUSG00000029613.9|eukaryotic translation initiation factor 2 alpha kinase 1
mm10_v2_chr15_-_76656905_76656934	0.178183	Sox2	ENSMUST00000176274.1|Cyhr1|ENSMUSG00000053929.10|cysteine and histidine rich 1
mm10_v2_chr2_-_152951688_152951700	0.17763	Sox2	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr4_-_151861698_151861761	0.176882	Sox2	ENSMUST00000049790.7|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr1_-_54926311_54926402	0.17525	Sox2	ENSMUST00000179030.1|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44 	ENSMUST00000044359.9|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44
mm10_v2_chr15_-_96699698_96699717	0.174865	Sox2	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr7_+_27195781_27195885	0.174038	Sox2	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr14_-_5389049_5389049	0.172953	Sox2	ENSMUST00000177986.1|Gm3500|ENSMUSG00000096003.1|predicted gene 3500
mm10_v2_chr12_-_40248073_40248086	0.172793	Sox2	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr11_-_120572822_120572842	0.171125	Sox2	ENSMUST00000168360.1|P4hb|ENSMUSG00000025130.5|prolyl 4-hydroxylase, beta polypeptide
mm10_v2_chr17_+_34898463_34898501	0.17107	Sox2	ENSMUST00000114033.2|Ehmt2|ENSMUSG00000013787.9|euchromatic histone lysine N-methyltransferase 2 	ENSMUST00000078061.6|Ehmt2|ENSMUSG00000013787.9|euchromatic histone lysine N-methyltransferase 2
mm10_v2_chr2_+_160731684_160731760	0.171066	Sox2	ENSMUST00000174885.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1 	ENSMUST00000109462.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr5_+_130187158_130187166	0.170784	Sox2	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr17_+_12916329_12916447	0.16966	Sox2	ENSMUST00000089024.6|Tcp1|ENSMUSG00000068039.6|t-complex protein 1 	ENSMUST00000151287.1|Tcp1|ENSMUSG00000068039.6|t-complex protein 1 	ENSMUST00000143961.1|Tcp1|ENSMUSG00000068039.6|t-complex protein 1
mm10_v2_chr17_-_56935388_56935504	0.167691	Sox2	ENSMUST00000025053.8|Mllt1|ENSMUSG00000024212.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm10_v2_chr7_-_120982260_120982312	0.166884	Sox2	ENSMUST00000033169.8|Cdr2|ENSMUSG00000030878.10|cerebellar degeneration-related 2
mm10_v2_chr4_+_136284658_136284686	0.165161	Sox2	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr2_+_30441831_30441853	0.164067	Sox2	ENSMUST00000131476.1|Ppp2r4|ENSMUSG00000039515.5|protein phosphatase 2A, regulatory subunit B (PR 53)
mm10_v2_chr18_+_56707725_56707940	0.16356	Sox2	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr19_-_46039442_46039481	0.162581	Sox2	ENSMUST00000137771.1|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr5_-_139484475_139484549	0.162213	Sox2	ENSMUST00000110851.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A 	ENSMUST00000079996.6|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr2_+_122426432_122426477	0.160411	Sox2	ENSMUST00000110525.1|Slc28a2|ENSMUSG00000027219.7|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
mm10_v2_chr10_+_41476314_41476392	0.159823	Sox2	ENSMUST00000119962.1|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENSMUST00000019967.9|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENSMUST00000099934.4|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1
mm10_v2_chr9_+_108508005_108508076	0.159506	Sox2	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr2_-_140671440_140671458	0.158915	Sox2	ENSMUST00000099301.1|Flrt3|ENSMUSG00000079021.1|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr4_+_141444654_141444714	0.158791	Sox2	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr3_-_89402650_89402793	0.156155	Sox2	ENSMUST00000168325.1|Lenep|ENSMUSG00000078173.2|lens epithelial protein 	ENSMUST00000057431.5|Lenep|ENSMUSG00000078173.2|lens epithelial protein
mm10_v2_chr13_+_22035821_22035848	0.15576	Sox2	ENSMUST00000110455.2|Hist1h2bk|ENSMUSG00000062727.3|histone cluster 1, H2bk
mm10_v2_chr9_-_44735189_44735213	0.154571	Sox2	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr17_-_48409729_48409906	0.154416	Sox2	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr2_+_172472512_172472535	0.153981	Sox2	ENSMUST00000029007.2|Fam209|ENSMUSG00000027505.2|family with sequence similarity 209
mm10_v2_chr14_+_50924968_50925004	0.153956	Sox2	ENSMUST00000049411.5|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1 	ENSMUST00000136753.1|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1 	ENSMUST00000154288.1|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1
mm10_v2_chr5_+_30013141_30013161	0.152655	Sox2	ENSMUST00000026845.7|Il6|ENSMUSG00000025746.7|interleukin 6
mm10_v2_chr2_-_26910569_26910677	0.152599	Sox2	ENSMUST00000015920.5|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000139815.1|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000102899.3|Med22|ENSMUSG00000015776.6|mediator complex subunit 22
mm10_v2_chr11_-_98625661_98625661	0.152146	Sox2	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr18_+_11839220_11839475	0.151328	Sox2	ENSMUST00000171109.1|Cables1|ENSMUSG00000040957.8|CDK5 and Abl enzyme substrate 1 	ENSMUST00000046948.8|Cables1|ENSMUSG00000040957.8|CDK5 and Abl enzyme substrate 1
mm10_v2_chr9_-_79759849_79759856	0.150662	Sox2	ENSMUST00000034881.6|Cox7a2|ENSMUSG00000032330.6|cytochrome c oxidase subunit VIIa 2
mm10_v2_chr10_+_39612934_39612934	0.150635	Sox2	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr7_+_101969796_101969843	0.149973	Sox2	ENSMUST00000084852.5|Numa1|ENSMUSG00000066306.6|nuclear mitotic apparatus protein 1
mm10_v2_chr9_-_78480736_78480841	0.148619	Sox2	ENSMUST00000156988.1|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr12_-_24096968_24096968	0.147826	Sox2	ENSMUST00000101538.3|9030624G23Rik|ENSMUSG00000073158.3|RIKEN cDNA 9030624G23 gene
mm10_v2_chr13_+_93304799_93304935	0.147441	Sox2	ENSMUST00000080127.5|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr11_-_69900949_69901001	0.143761	Sox2	ENSMUST00000102580.3|2810408A11Rik|ENSMUSG00000018570.11|RIKEN cDNA 2810408A11 gene
mm10_v2_chr19_-_4615453_4615512	0.142127	Sox2	ENSMUST00000053597.2|Lrfn4|ENSMUSG00000045045.7|leucine rich repeat and fibronectin type III domain containing 4
mm10_v2_chr11_-_116024489_116024511	0.141357	Sox2	ENSMUST00000016703.7|H3f3b|ENSMUSG00000016559.8|H3 histone, family 3B
mm10_v2_chr2_-_7395879_7395912	0.141332	Sox2	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_-_112228934_112228975	0.140015	Sox2	ENSMUST00000181535.2|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr17_-_23586214_23586269	0.140003	Sox2	ENSMUST00000115516.3|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr13_-_17944151_17944239	0.139061	Sox2	ENSMUST00000009003.7|Rala|ENSMUSG00000008859.7|v-ral simian leukemia viral oncogene homolog A (ras related)
mm10_v2_chr2_-_156111863_156111943	0.138009	Sox2	ENSMUST00000154889.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000079312.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000153634.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000133921.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000131377.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000183518.1|RP23-220D12.12|ENSMUSG00000098950.1|RNA-binding protein 12  	ENSMUST00000184265.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109607.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109608.2|Cpne1|ENSMUSG00000074643.6|copine I
mm10_v2_chr6_-_48048911_48048956	0.137707	Sox2	ENSMUST00000095944.3|Zfp777|ENSMUSG00000071477.4|zinc finger protein 777
mm10_v2_chr12_+_76081645_76081661	0.137589	Sox2	ENSMUST00000154509.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr12_+_20415938_20415938	0.136342	Sox2	ENSMUST00000101568.3|Gm10479|ENSMUSG00000073184.3|predicted gene 10479
mm10_v2_chr19_-_40588338_40588371	0.136249	Sox2	ENSMUST00000176939.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr1_+_81077274_81077327	0.135245	Sox2	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr1_+_171331414_171331426	0.134067	Sox2	ENSMUST00000097467.1|Dedd|ENSMUSG00000013973.6|death effector domain-containing
mm10_v2_chr4_-_134012381_134012404	0.132822	Sox2	ENSMUST00000176113.1|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chrX_+_47912387_47912442	0.132771	Sox2	ENSMUST00000001202.8|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe 	ENSMUST00000115020.1|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe
mm10_v2_chr13_-_41220162_41220195	0.132444	Sox2	ENSMUST00000117096.1|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr3_+_90051630_90051636	0.131431	Sox2	ENSMUST00000159064.1|4933434E20Rik|ENSMUSG00000027942.10|RIKEN cDNA 4933434E20 gene
mm10_v2_chr3_+_27317028_27317084	0.130501	Sox2	ENSMUST00000046383.5|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10 	ENSMUST00000174840.1|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10
mm10_v2_chr7_+_141061274_141061311	0.129892	Sox2	ENSMUST00000048002.5|B4galnt4|ENSMUSG00000055629.4|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm10_v2_chr4_+_116557658_116557724	0.129271	Sox2	ENSMUST00000030460.8|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr11_+_72796254_72796268	0.128813	Sox2	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr4_+_149518216_149518277	0.128412	Sox2	ENSMUST00000030839.6|Ctnnbip1|ENSMUSG00000028988.7|catenin beta interacting protein 1
mm10_v2_chr5_-_102069905_102069940	0.126985	Sox2	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr4_-_151861762_151861876	0.124901	Sox2	ENSMUST00000097774.2|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr19_-_5894100_5894155	0.123346	Sox2	ENSMUST00000055911.4|Tigd3|ENSMUSG00000044390.4|tigger transposable element derived 3
mm10_v2_chr6_+_125096145_125096162	0.123092	Sox2	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr7_-_126475082_126475130	0.122577	Sox2	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr17_+_53566971_53567023	0.122501	Sox2	ENSMUST00000000724.8|Kat2b|ENSMUSG00000000708.8|K(lysine) acetyltransferase 2B
mm10_v2_chr9_-_121995962_121996041	0.12225	Sox2	ENSMUST00000084743.5|Pomgnt2|ENSMUSG00000066235.6|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
mm10_v2_chr1_-_51915901_51915958	0.121833	Sox2	ENSMUST00000018561.7|Myo1b|ENSMUSG00000018417.8|myosin IB 	ENSMUST00000114537.2|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr7_-_109960461_109960477	0.12139	Sox2	ENSMUST00000080437.6|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr17_+_32993123_32993201	0.12108	Sox2	ENSMUST00000087666.4|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952 	ENSMUST00000157017.1|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952
mm10_v2_chr7_-_103853199_103853240	0.120259	Sox2	ENSMUST00000033229.3|Hbb-y|ENSMUSG00000052187.3|hemoglobin Y, beta-like embryonic chain
mm10_v2_chr5_+_138085083_138085147	0.119208	Sox2	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr2_-_152831112_152831326	0.116701	Sox2	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr7_-_109960385_109960433	0.11437	Sox2	ENSMUST00000106722.1|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr16_-_31275277_31275290	0.113254	Sox2	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr16_-_94370994_94371019	0.10947	Sox2	ENSMUST00000113914.1|Pigp|ENSMUSG00000022940.10|phosphatidylinositol glycan anchor biosynthesis, class P 	ENSMUST00000113905.1|Pigp|ENSMUSG00000022940.10|phosphatidylinositol glycan anchor biosynthesis, class P
mm10_v2_chr18_-_43687695_43687773	0.109118	Sox2	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr4_-_11254248_11254266	0.108931	Sox2	ENSMUST00000044616.3|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108319.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108318.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8
mm10_v2_chr11_+_3649494_3649494	0.10599	Sox2	ENSMUST00000093389.2|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr19_+_21272276_21272296	0.104523	Sox2	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chr11_-_98400453_98400490	0.104444	Sox2	ENSMUST00000090827.5|Pgap3|ENSMUSG00000038208.7|post-GPI attachment to proteins 3
mm10_v2_chr2_-_7395968_7396011	0.103031	Sox2	ENSMUST00000002176.6|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr12_+_44269145_44269227	0.102271	Sox2	ENSMUST00000043082.8|Pnpla8|ENSMUSG00000036257.8|patatin-like phospholipase domain containing 8
mm10_v2_chr9_+_57825918_57825945	0.101754	Sox2	ENSMUST00000165858.1|Gm17231|ENSMUSG00000091908.1|predicted gene 17231
mm10_v2_chr10_+_14523062_14523065	0.101518	Sox2	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr19_+_28990476_28990497	0.101496	Sox2	ENSMUST00000050148.3|Cdc37l1|ENSMUSG00000024780.6|cell division cycle 37-like 1
mm10_v2_chr1_+_74588347_74588383	0.101214	Sox2	ENSMUST00000113732.1|Bcs1l|ENSMUSG00000026172.6|BCS1-like (yeast)
mm10_v2_chr11_+_20201406_20201448	0.100541	Sox2	ENSMUST00000020358.5|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109602.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109601.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family
mm10_v2_chr7_-_122021143_122021222	0.0992896	Sox2	ENSMUST00000033160.8|Gga2|ENSMUSG00000030872.8|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm10_v2_chr2_-_28583239_28583279	0.0982704	Sox2	ENSMUST00000028157.8|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr17_-_24886304_24886353	0.0981706	Sox2	ENSMUST00000044252.5|Nubp2|ENSMUSG00000039183.5|nucleotide binding protein 2
mm10_v2_chr5_+_118065360_118065360	0.0977812	Sox2	ENSMUST00000031305.3|Gm9754|ENSMUSG00000029360.3|predicted gene 9754
mm10_v2_chr11_+_106216926_106216968	0.0975806	Sox2	ENSMUST00000021046.5|Ddx42|ENSMUSG00000020705.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm10_v2_chr3_-_144202300_144202345	0.0974092	Sox2	ENSMUST00000121796.1|Lmo4|ENSMUSG00000028266.11|LIM domain only 4 	ENSMUST00000121112.1|Lmo4|ENSMUSG00000028266.11|LIM domain only 4
mm10_v2_chr11_-_116168138_116168205	0.0969015	Sox2	ENSMUST00000139020.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000103031.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000124828.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1
mm10_v2_chr2_+_125859134_125859225	0.0964026	Sox2	ENSMUST00000028636.6|Galk2|ENSMUSG00000027207.9|galactokinase 2 	ENSMUST00000125084.1|Galk2|ENSMUSG00000027207.9|galactokinase 2
mm10_v2_chr15_-_97831460_97831519	0.0955191	Sox2	ENSMUST00000079838.7|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000118294.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr2_+_163658370_163658510	0.0947562	Sox2	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr16_+_78301458_78301496	0.0940419	Sox2	ENSMUST00000023572.7|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr6_-_28831747_28831747	0.0931783	Sox2	ENSMUST00000062304.5|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr11_+_3289880_3289993	0.0926728	Sox2	ENSMUST00000110043.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1 	ENSMUST00000094471.3|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr7_+_73375494_73375549	0.0924631	Sox2	ENSMUST00000094312.5|Rgma|ENSMUSG00000070509.9|RGM domain family, member A 	ENSMUST00000119206.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr2_-_168767136_168767201	0.0920065	Sox2	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr9_+_119402444_119402501	0.0912797	Sox2	ENSMUST00000035093.8|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB 	ENSMUST00000165044.1|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB
mm10_v2_chr15_-_79658889_79658956	0.0912505	Sox2	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr4_-_129696817_129696843	0.0907674	Sox2	ENSMUST00000102588.3|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr14_+_26514554_26514554	0.0906383	Sox2	ENSMUST00000104927.1|Gm2178|ENSMUSG00000078128.1|predicted gene 2178
mm10_v2_chr7_+_5056856_5056916	0.089906	Sox2	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr11_+_90638127_90638207	0.0893271	Sox2	ENSMUST00000020851.8|Cox11|ENSMUSG00000020544.8|cytochrome c oxidase assembly protein 11
mm10_v2_chr17_-_43667015_43667163	0.0892921	Sox2	ENSMUST00000024705.4|Slc25a27|ENSMUSG00000023912.9|solute carrier family 25, member 27
mm10_v2_chr11_-_120581196_120581380	0.088694	Sox2	ENSMUST00000067936.5|Arhgdia|ENSMUSG00000025132.7|Rho GDP dissociation inhibitor (GDI) alpha
mm10_v2_chr9_-_105495475_105495489	0.087303	Sox2	ENSMUST00000176036.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr4_+_101647712_101647736	0.0855882	Sox2	ENSMUST00000030254.8|Leprot|ENSMUSG00000035212.8|leptin receptor overlapping transcript
mm10_v2_chr2_+_92185438_92185463	0.0847999	Sox2	ENSMUST00000128781.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr14_-_6287250_6287250	0.0827041	Sox2	ENSMUST00000170104.2|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chr2_+_37443273_37443339	0.0815481	Sox2	ENSMUST00000133434.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000061179.5|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr5_-_148928619_148928659	0.0812996	Sox2	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr7_-_130519961_130520004	0.0798553	Sox2	ENSMUST00000178534.1|Ate1|ENSMUSG00000030850.9|arginyltransferase 1 	ENSMUST00000094017.3|Ate1|ENSMUSG00000030850.9|arginyltransferase 1
mm10_v2_chr15_+_76343504_76343558	0.0798515	Sox2	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
mm10_v2_chr3_+_88142328_88142483	0.0798229	Sox2	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr14_-_55722223_55722264	0.0797508	Sox2	ENSMUST00000163889.1|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit
mm10_v2_chr10_+_39369750_39369804	0.0789458	Sox2	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr6_+_47835650_47835725	0.0759245	Sox2	ENSMUST00000079881.4|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398 	ENSMUST00000114598.1|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398
mm10_v2_chr5_+_3928033_3928178	0.0739396	Sox2	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr15_+_75596645_75596662	0.0733146	Sox2	ENSMUST00000023243.4|Gpihbp1|ENSMUSG00000022579.4|GPI-anchored HDL-binding protein 1
mm10_v2_chr5_+_108065742_108065767	0.0728551	Sox2	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr1_-_51915968_51916071	0.0715903	Sox2	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr15_+_80173642_80173721	0.071443	Sox2	ENSMUST00000044970.6|Mgat3|ENSMUSG00000042428.6|mannoside acetylglucosaminyltransferase 3
mm10_v2_chr7_-_113347273_113347293	0.0712473	Sox2	ENSMUST00000117577.1|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10
mm10_v2_chr7_-_83550258_83550258	0.0709043	Sox2	ENSMUST00000177929.1|Gm10610|ENSMUSG00000094841.1|predicted gene 10610
mm10_v2_chr5_-_137786651_137786668	0.0703342	Sox2	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chrX_+_114474312_114474353	0.0685168	Sox2	ENSMUST00000113371.1|Klhl4|ENSMUSG00000025597.7|kelch-like 4 	ENSMUST00000040504.5|Klhl4|ENSMUSG00000025597.7|kelch-like 4
mm10_v2_chr2_+_147012996_147013083	0.0681626	Sox2	ENSMUST00000028921.5|Xrn2|ENSMUSG00000027433.5|5'-3' exoribonuclease 2
mm10_v2_chr7_-_127615208_127615219	0.0652684	Sox2	ENSMUST00000122066.1|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr1_+_89070406_89070421	0.0643829	Sox2	ENSMUST00000066279.4|Sh3bp4|ENSMUSG00000036206.6|SH3-domain binding protein 4
mm10_v2_chr5_-_105110292_105110292	0.0635989	Sox2	ENSMUST00000031238.6|Gbp9|ENSMUSG00000029298.9|guanylate-binding protein 9
mm10_v2_chr15_-_73423180_73423218	0.0632215	Sox2	ENSMUST00000110036.2|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2 	ENSMUST00000170939.1|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2
mm10_v2_chr9_-_122903102_122903184	0.0631724	Sox2	ENSMUST00000180877.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene 	ENSMUST00000180486.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene
mm10_v2_chr4_+_54945038_54945082	0.0614824	Sox2	ENSMUST00000133895.1|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr15_-_98871175_98871204	0.0591136	Sox2	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr4_+_45203921_45203931	0.0577854	Sox2	ENSMUST00000107804.1|Frmpd1|ENSMUSG00000035615.6|FERM and PDZ domain containing 1
mm10_v2_chr9_+_118478344_118478451	0.0576439	Sox2	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr1_+_81077204_81077252	0.0573992	Sox2	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr11_+_60699758_60699845	0.0571666	Sox2	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr4_-_152318458_152318654	0.0567764	Sox2	ENSMUST00000170820.1|Rnf207|ENSMUSG00000058498.6|ring finger protein 207 	ENSMUST00000076183.5|Rnf207|ENSMUSG00000058498.6|ring finger protein 207
mm10_v2_chr8_-_67515606_67515606	0.0560554	Sox2	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr1_-_37536232_37536236	0.0559806	Sox2	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr13_+_83573577_83573607	0.055515	Sox2	ENSMUST00000185052.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr7_-_78578308_78578408	0.0547633	Sox2	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr10_-_11080956_11081023	0.0537874	Sox2	ENSMUST00000105560.1|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1
mm10_v2_chr7_-_127615226_127615272	0.0526718	Sox2	ENSMUST00000084564.3|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr17_-_35703971_35703994	0.0523881	Sox2	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr14_+_3332627_3332627	0.0511066	Sox2	ENSMUST00000177786.1|Gm2956|ENSMUSG00000096574.1|predicted gene 2956
mm10_v2_chr2_+_92185467_92185494	0.0499606	Sox2	ENSMUST00000111291.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr5_-_134456702_134456785	0.0457958	Sox2	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr13_+_16014457_16014475	0.0452966	Sox2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr17_-_28486082_28486149	0.0431371	Sox2	ENSMUST00000079413.3|Fkbp5|ENSMUSG00000024222.10|FK506 binding protein 5
mm10_v2_chr19_+_8967031_8967050	0.0425489	Sox2	ENSMUST00000052248.7|Eef1g|ENSMUSG00000071644.4|eukaryotic translation elongation factor 1 gamma
mm10_v2_chr9_+_45906513_45906569	0.0416554	Sox2	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr1_-_16519201_16519270	0.0408247	Sox2	ENSMUST00000159558.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000054668.6|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000162627.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000162007.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000128957.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000115359.3|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000151888.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr5_-_28210168_28210179	0.0401393	Sox2	ENSMUST00000117098.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr13_+_93304940_93305278	0.0385748	Sox2	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr19_+_8941865_8942050	0.0373009	Sox2	ENSMUST00000096240.2|Mta2|ENSMUSG00000071646.3|metastasis-associated gene family, member 2
mm10_v2_chr5_-_142550965_142551110	0.034798	Sox2	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr17_+_26414820_26414965	0.0345683	Sox2	ENSMUST00000182897.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000183077.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000053020.7|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila)
mm10_v2_chr11_-_62731865_62731910	0.0329187	Sox2	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr12_-_80436571_80436603	0.032729	Sox2	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr18_+_60803838_60803856	0.0326209	Sox2	ENSMUST00000050487.8|Cd74|ENSMUSG00000024610.8|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) 	ENSMUST00000097563.2|Cd74|ENSMUSG00000024610.8|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) 	ENSMUST00000167610.1|Cd74|ENSMUSG00000024610.8|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
mm10_v2_chr11_+_80383397_80383415	0.0326207	Sox2	ENSMUST00000053740.8|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr18_+_60212080_60212122	0.0315097	Sox2	ENSMUST00000031549.5|Gm4951|ENSMUSG00000073555.1|predicted gene 4951
mm10_v2_chr5_+_8660059_8660099	0.0307971	Sox2	ENSMUST00000047753.4|Abcb1a|ENSMUSG00000040584.8|ATP-binding cassette, sub-family B (MDR/TAP), member 1A
mm10_v2_chr5_-_149053038_149053053	0.0304815	Sox2	ENSMUST00000085546.6|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr4_+_138217120_138217203	0.0302246	Sox2	ENSMUST00000137851.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3 	ENSMUST00000165861.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr17_+_69383768_69383840	0.0274528	Sox2	ENSMUST00000112676.2|Zbtb14|ENSMUSG00000049672.8|zinc finger and BTB domain containing 14
mm10_v2_chr12_+_80790532_80790574	0.0271241	Sox2	ENSMUST00000068519.5|4933426M11Rik|ENSMUSG00000021133.8|RIKEN cDNA 4933426M11 gene
mm10_v2_chr2_-_28583189_28583230	0.0270227	Sox2	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr4_+_116558056_116558090	0.0252158	Sox2	ENSMUST00000106475.1|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr1_+_158362261_158362304	0.0247502	Sox2	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr17_-_25273155_25273265	0.0232658	Sox2	ENSMUST00000173231.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr4_-_132212255_132212303	0.0215724	Sox2	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr3_+_103020546_103020635	0.0209742	Sox2	ENSMUST00000029446.8|Csde1|ENSMUSG00000068823.6|cold shock domain containing E1, RNA binding
mm10_v2_chr13_+_49341549_49341623	0.0206827	Sox2	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr14_+_75845093_75845165	0.0196034	Sox2	ENSMUST00000110894.2|Tpt1|ENSMUSG00000060126.8|tumor protein, translationally-controlled 1
mm10_v2_chr11_+_20647149_20647156	0.0187282	Sox2	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr2_-_132578244_132578255	0.0178099	Sox2	ENSMUST00000110142.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr6_-_128437653_128437730	0.0158739	Sox2	ENSMUST00000151796.1|Fkbp4|ENSMUSG00000030357.4|FK506 binding protein 4
mm10_v2_chr4_-_151861667_151861679	0.0142932	Sox2	ENSMUST00000169423.2|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr6_+_86628174_86628208	0.0137002	Sox2	ENSMUST00000043400.6|Asprv1|ENSMUSG00000033508.6|aspartic peptidase, retroviral-like 1
mm10_v2_chr2_-_6721890_6721928	0.0127302	Sox2	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr10_-_19011948_19011973	0.0127075	Sox2	ENSMUST00000105527.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr10_-_103028771_103028782	0.0126757	Sox2	ENSMUST00000040859.5|Alx1|ENSMUSG00000036602.7|ALX homeobox 1
mm10_v2_chr1_-_93305850_93305915	0.011105	Sox2	ENSMUST00000112944.1|Mterfd2|ENSMUSG00000026273.7|MTERF domain containing 2 	ENSMUST00000112942.1|Mterfd2|ENSMUSG00000026273.7|MTERF domain containing 2 	ENSMUST00000027492.7|Mterfd2|ENSMUSG00000026273.7|MTERF domain containing 2
mm10_v2_chr2_-_173276526_173276544	0.0108973	Sox2	ENSMUST00000036248.6|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr9_-_107872821_107872844	0.0093129	Sox2	ENSMUST00000183032.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr11_+_103028327_103028368	0.00912254	Sox2	ENSMUST00000021314.7|Nmt1|ENSMUSG00000020936.8|N-myristoyltransferase 1
mm10_v2_chr17_-_50094277_50094332	0.00888518	Sox2	ENSMUST00000113195.1|Rftn1|ENSMUSG00000039316.8|raftlin lipid raft linker 1
mm10_v2_chr7_+_45215753_45215852	0.00846931	Sox2	ENSMUST00000033060.6|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000155313.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000107801.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr2_-_132578155_132578233	0.00773057	Sox2	ENSMUST00000110136.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000124107.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000060955.5|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr10_+_45067167_45067279	0.00678697	Sox2	ENSMUST00000099858.2|Prep|ENSMUSG00000019849.10|prolyl endopeptidase
mm10_v2_chr1_+_87213924_87213990	0.00672277	Sox2	ENSMUST00000113230.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000123735.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2
mm10_v2_chr6_-_56797637_56797757	0.00636532	Sox2	ENSMUST00000114323.1|Kbtbd2|ENSMUSG00000059486.5|kelch repeat and BTB (POZ) domain containing 2
mm10_v2_chr9_+_120492606_120492640	0.00630991	Sox2	ENSMUST00000007139.4|Eif1b|ENSMUSG00000006941.4|eukaryotic translation initiation factor 1B
mm10_v2_chr18_-_23981555_23981555	0.00531134	Sox2	ENSMUST00000115829.1|Zscan30|ENSMUSG00000024274.8|zinc finger and SCAN domain containing 30
mm10_v2_chr2_+_18677002_18677053	0.00501688	Sox2	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr11_+_115381906_115381933	0.00449548	Sox2	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr11_+_75733037_75733148	0.00394669	Sox2	ENSMUST00000131398.1|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr9_+_108569885_108569943	0.00378478	Sox2	ENSMUST00000019183.8|Dalrd3|ENSMUSG00000019039.8|DALR anticodon binding domain containing 3
mm10_v2_chr4_+_154869585_154869636	0.00290435	Sox2	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr14_-_55722176_55722211	0.00254956	Sox2	ENSMUST00000169237.1|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit 	ENSMUST00000062861.7|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit
mm10_v2_chr13_-_86046901_86046904	0.00250565	Sox2	ENSMUST00000131011.1|Cox7c|ENSMUSG00000017778.8|cytochrome c oxidase subunit VIIc
mm10_v2_chr14_+_4726775_4726775	0.000415664	Sox2	ENSMUST00000165619.1|Gm3252|ENSMUSG00000094628.1|predicted gene 3252
mm10_v2_chr10_+_94575257_94575295	0.000316761	Sox2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr9_-_72111827_72111895	0.000149698	Sox2	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr2_+_164879358_164879398	0.000147843	Sox2	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
