mm10_v2_chrX_-_61185558_61185558	38.1557	Aire	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chr13_-_110280103_110280213	6.96262	Aire	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr8_+_69808672_69808742	6.10101	Aire	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr5_-_84417359_84417389	5.54567	Aire	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr10_+_123264076_123264125	4.76667	Aire	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr12_-_78983476_78983493	4.55281	Aire	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr3_-_116968969_116969004	4.51184	Aire	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr16_+_36875119_36875205	3.42432	Aire	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chr2_+_55435918_55435970	3.18153	Aire	ENSMUST00000067101.3|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr9_-_53610329_53610382	3.0857	Aire	ENSMUST00000034547.5|Acat1|ENSMUSG00000032047.5|acetyl-Coenzyme A acetyltransferase 1
mm10_v2_chr7_+_60155538_60155538	2.92702	Aire	ENSMUST00000057611.4|Gm7367|ENSMUSG00000047370.4|predicted pseudogene 7367
mm10_v2_chr7_-_127895578_127895647	2.69142	Aire	ENSMUST00000033074.6|Vkorc1|ENSMUSG00000096145.1|vitamin K epoxide reductase complex, subunit 1
mm10_v2_chr10_-_130280218_130280242	2.66268	Aire	ENSMUST00000061571.3|Neurod4|ENSMUSG00000048015.3|neurogenic differentiation 4
mm10_v2_chr7_-_14562171_14562171	2.55214	Aire	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr18_+_37400845_37400886	2.54812	Aire	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr2_-_134644079_134644109	2.226	Aire	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr7_+_28863831_28863853	2.17787	Aire	ENSMUST00000138272.1|Lgals7|ENSMUSG00000053522.5|lectin, galactose binding, soluble 7
mm10_v2_chr10_+_86021961_86021991	2.14935	Aire	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr14_+_76476913_76476930	2.11541	Aire	ENSMUST00000140251.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr19_-_28963863_28963908	2.08914	Aire	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr1_-_5070281_5070288	2.01791	Aire	ENSMUST00000147158.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20 	ENSMUST00000118000.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20
mm10_v2_chr18_+_37725706_37725754	1.97434	Aire	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr16_-_91618986_91619026	1.9143	Aire	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr5_+_24100578_24100669	1.89602	Aire	ENSMUST00000030841.5|Klhl7|ENSMUSG00000028986.6|kelch-like 7 	ENSMUST00000163409.1|Klhl7|ENSMUSG00000028986.6|kelch-like 7
mm10_v2_chrM_+_14138_14154	1.65279	Aire	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm10_v2_chr9_-_97111117_97111159	1.5225	Aire	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr5_+_140735526_140735567	1.42609	Aire	ENSMUST00000120630.2|Amz1|ENSMUSG00000050022.10|archaelysin family metallopeptidase 1
mm10_v2_chr10_-_81014902_81014945	1.4231	Aire	ENSMUST00000126317.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000092285.3|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000117805.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr14_+_21481428_21481439	1.42077	Aire	ENSMUST00000182996.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr11_-_115627948_115628122	1.39027	Aire	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chrM_-_14060_14074	1.37469	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr2_-_134644125_134644145	1.33245	Aire	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr12_+_84052114_84052145	1.32623	Aire	ENSMUST00000120927.1|Acot3|ENSMUSG00000021228.8|acyl-CoA thioesterase 3
mm10_v2_chr2_+_164948219_164948245	1.30494	Aire	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr3_-_89411781_89411894	1.27764	Aire	ENSMUST00000107429.3|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000129308.2|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000107426.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000050398.4|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000162701.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm10_v2_chr10_+_58446845_58446928	1.2698	Aire	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr9_-_53667429_53667521	1.25736	Aire	ENSMUST00000166367.1|Cul5|ENSMUSG00000032030.10|cullin 5 	ENSMUST00000034529.7|Cul5|ENSMUSG00000032030.10|cullin 5
mm10_v2_chr1_+_65186727_65186750	1.19227	Aire	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr8_+_64947177_64947255	1.15719	Aire	ENSMUST00000079896.7|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192 	ENSMUST00000026595.5|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192
mm10_v2_chr17_+_35236556_35236607	1.15189	Aire	ENSMUST00000068261.8|Atp6v1g2|ENSMUSG00000024403.10|ATPase, H+ transporting, lysosomal V1 subunit G2
mm10_v2_chr13_-_62371936_62371936	1.14488	Aire	ENSMUST00000107989.3|Gm3604|ENSMUSG00000094942.1|predicted gene 3604
mm10_v2_chr3_-_62506970_62507027	1.13311	Aire	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr8_-_4217261_4217312	1.12524	Aire	ENSMUST00000168386.2|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr2_-_121473993_121474067	0.96693	Aire	ENSMUST00000056732.3|Mfap1b|ENSMUSG00000048222.3|microfibrillar-associated protein 1B
mm10_v2_chr12_+_10390756_10390836	0.938815	Aire	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr8_-_4217133_4217168	0.93857	Aire	ENSMUST00000175906.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr2_-_165400398_165400410	0.931908	Aire	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr9_+_13662460_13662460	0.913982	Aire	ENSMUST00000177755.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr4_-_19570073_19570117	0.903486	Aire	ENSMUST00000029885.4|Cpne3|ENSMUSG00000028228.5|copine III
mm10_v2_chr5_-_135251209_135251242	0.873731	Aire	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr10_-_111997204_111997279	0.805669	Aire	ENSMUST00000074805.5|Glipr1|ENSMUSG00000056888.5|GLI pathogenesis-related 1 (glioma)
mm10_v2_chr12_+_36157124_36157238	0.8029	Aire	ENSMUST00000041640.3|Ankmy2|ENSMUSG00000036188.3|ankyrin repeat and MYND domain containing 2
mm10_v2_chr7_-_141434532_141434605	0.781338	Aire	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr10_+_52358767_52358767	0.771414	Aire	ENSMUST00000180473.1|Gm26741|ENSMUSG00000097704.1|predicted gene, 26741
mm10_v2_chr8_-_4216912_4217003	0.708075	Aire	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr9_+_109054839_109054871	0.705378	Aire	ENSMUST00000154184.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr17_+_22689771_22689771	0.692879	Aire	ENSMUST00000055305.8|Gm9805|ENSMUSG00000046088.8|predicted gene 9805
mm10_v2_chr9_+_76014855_76015055	0.531079	Aire	ENSMUST00000008052.6|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 	ENSMUST00000183425.1|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 	ENSMUST00000183979.1|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 	ENSMUST00000117981.2|Hmgcll1|ENSMUSG00000007908.8|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm10_v2_chr6_+_126939957_126939988	0.499711	Aire	ENSMUST00000032497.3|D6Wsu163e|ENSMUSG00000030347.3|DNA segment, Chr 6, Wayne State University 163, expressed
mm10_v2_chr12_-_36156781_36156825	0.467105	Aire	ENSMUST00000020856.4|Bzw2|ENSMUSG00000020547.4|basic leucine zipper and W2 domains 2
mm10_v2_chr7_+_45896941_45897101	0.432103	Aire	ENSMUST00000069772.7|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143 	ENSMUST00000107716.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr19_-_6118491_6118586	0.419118	Aire	ENSMUST00000113533.1|Sac3d1|ENSMUSG00000024790.7|SAC3 domain containing 1
mm10_v2_chr19_+_3323301_3323339	0.416383	Aire	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr3_+_89715016_89715084	0.398044	Aire	ENSMUST00000098924.2|Adar|ENSMUSG00000027951.10|adenosine deaminase, RNA-specific
mm10_v2_chr9_-_113708209_113708259	0.368376	Aire	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr7_-_103741322_103741322	0.349873	Aire	ENSMUST00000051346.2|Olfr629|ENSMUSG00000047545.2|olfactory receptor 629
mm10_v2_chr2_+_175283298_175283298	0.337516	Aire	ENSMUST00000098998.3|Gm14440|ENSMUSG00000078901.2|predicted gene 14440
mm10_v2_chr11_-_28584260_28584324	0.330865	Aire	ENSMUST00000093253.3|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000109502.2|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000042534.8|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A
mm10_v2_chr19_+_34217588_34217624	0.322354	Aire	ENSMUST00000119603.1|Stambpl1|ENSMUSG00000024776.11|STAM binding protein like 1
mm10_v2_chr16_-_36874806_36874862	0.318932	Aire	ENSMUST00000075946.5|Eaf2|ENSMUSG00000022838.7|ELL associated factor 2
mm10_v2_chr2_-_94010807_94010823	0.318127	Aire	ENSMUST00000111240.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr9_+_64235201_64235201	0.311378	Aire	ENSMUST00000039011.3|Uchl4|ENSMUSG00000035337.3|ubiquitin carboxyl-terminal esterase L4
mm10_v2_chr13_+_49504774_49504816	0.296511	Aire	ENSMUST00000051504.7|Ecm2|ENSMUSG00000043631.7|extracellular matrix protein 2, female organ and adipocyte specific
mm10_v2_chr2_+_172248492_172248492	0.264459	Aire	ENSMUST00000038532.1|Mc3r|ENSMUSG00000038537.1|melanocortin 3 receptor
mm10_v2_chr8_-_31739763_31739763	0.263939	Aire	ENSMUST00000178878.1|Gm5117|ENSMUSG00000093862.1|predicted gene 5117
mm10_v2_chr2_+_176431829_176431829	0.26167	Aire	ENSMUST00000172025.1|Gm14435|ENSMUSG00000089951.2|predicted gene 14435
mm10_v2_chr5_+_29378604_29378699	0.246289	Aire	ENSMUST00000181005.1|4632411P08Rik|ENSMUSG00000097561.1|RIKEN cDNA 4632411P08 gene
mm10_v2_chrX_-_38576166_38576187	0.241629	Aire	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr1_-_65186456_65186504	0.205122	Aire	ENSMUST00000169032.1|Idh1|ENSMUSG00000025950.10|isocitrate dehydrogenase 1 (NADP+), soluble
mm10_v2_chr10_+_53337686_53337724	0.171252	Aire	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr5_-_105343929_105343929	0.164262	Aire	ENSMUST00000183149.1|Gbp11|ENSMUSG00000098049.1|guanylate binding protein 11
mm10_v2_chr14_-_18894255_18894282	0.160704	Aire	ENSMUST00000124353.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chr2_-_94010729_94010764	0.151935	Aire	ENSMUST00000040005.6|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli) 	ENSMUST00000126378.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr8_-_109962127_109962213	0.144735	Aire	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chrM_+_11734_11757	0.142002	Aire	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr4_+_154869585_154869636	0.0962905	Aire	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr4_+_42714926_42714926	0.0897249	Aire	ENSMUST00000178454.1|Gm21955|ENSMUSG00000095375.1|predicted gene, 21955
mm10_v2_chr17_-_6961156_6961156	0.0838401	Aire	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
