mm10_v2_chr6_-_23248264_23248390	12.2753	Brca1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr15_-_97020322_97020336	4.89941	Brca1	ENSMUST00000166223.1|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr7_-_102100227_102100258	3.37594	Brca1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chrX_+_150594420_150594478	2.69272	Brca1	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr17_-_70853482_70853546	2.62163	Brca1	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr7_-_102099932_102099943	2.56359	Brca1	ENSMUST00000106934.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr11_-_98625661_98625661	2.46826	Brca1	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr7_-_144939823_144939869	2.36785	Brca1	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr4_-_98817537_98817706	2.03707	Brca1	ENSMUST00000102790.3|Kank4|ENSMUSG00000035407.8|KN motif and ankyrin repeat domains 4
mm10_v2_chr3_+_87906321_87906356	1.95632	Brca1	ENSMUST00000005017.8|Hdgf|ENSMUSG00000004897.10|hepatoma-derived growth factor
mm10_v2_chr5_+_147077050_147077050	1.947	Brca1	ENSMUST00000050970.3|Polr1d|ENSMUSG00000029642.7|polymerase (RNA) I polypeptide D
mm10_v2_chr11_+_59306920_59306935	1.87075	Brca1	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr12_-_10900296_10900318	1.86416	Brca1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr17_+_40811089_40811133	1.81614	Brca1	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr13_-_107890059_107890073	1.73549	Brca1	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chrX_+_71663665_71663671	1.65096	Brca1	ENSMUST00000070449.5|Gpr50|ENSMUSG00000056380.7|G-protein-coupled receptor 50
mm10_v2_chr12_+_52097737_52097775	1.57591	Brca1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr11_-_106998483_106998491	1.53678	Brca1	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr4_-_116708312_116708406	1.52383	Brca1	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr4_-_131838231_131838291	1.51171	Brca1	ENSMUST00000030741.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U 	ENSMUST00000105987.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U
mm10_v2_chr18_-_15063560_15063617	1.49215	Brca1	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr9_-_109082372_109082414	1.47758	Brca1	ENSMUST00000167504.1|Tma7|ENSMUSG00000091537.1|translational machinery associated 7 homolog (S. cerevisiae)
mm10_v2_chrX_+_150589907_150589996	1.45336	Brca1	ENSMUST00000080884.4|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr5_-_138187177_138187237	1.44925	Brca1	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr5_+_146833106_146833210	1.43019	Brca1	ENSMUST00000075453.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21 	ENSMUST00000099272.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr15_-_27681498_27681554	1.42267	Brca1	ENSMUST00000100739.3|Fam105a|ENSMUSG00000056069.8|family with sequence similarity 105, member A
mm10_v2_chr19_-_24225015_24225033	1.41803	Brca1	ENSMUST00000099558.4|Tjp2|ENSMUSG00000024812.9|tight junction protein 2
mm10_v2_chr11_+_44617310_44617336	1.39373	Brca1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr9_+_44773191_44773263	1.38106	Brca1	ENSMUST00000147559.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr13_+_100651328_100651397	1.32426	Brca1	ENSMUST00000022135.8|Taf9|ENSMUSG00000078941.3|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000084721.6|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr5_+_146832890_146832947	1.31231	Brca1	ENSMUST00000035983.5|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr11_+_6291660_6291687	1.30961	Brca1	ENSMUST00000101554.2|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENSMUST00000093350.3|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr14_-_54864055_54864158	1.29382	Brca1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr19_-_10203880_10204169	1.28523	Brca1	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chr12_-_12940600_12940616	1.27842	Brca1	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr10_-_42583628_42583639	1.25676	Brca1	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr7_-_17027853_17027921	1.25395	Brca1	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr3_+_87930256_87930350	1.24854	Brca1	ENSMUST00000055984.6|Isg20l2|ENSMUSG00000048039.8|interferon stimulated exonuclease gene 20-like 2
mm10_v2_chr19_-_32466575_32466575	1.23912	Brca1	ENSMUST00000078034.3|Rpl9-ps6|ENSMUSG00000062456.3|ribosomal protein L9, pseudogene 6
mm10_v2_chr5_-_135064063_135064116	1.23008	Brca1	ENSMUST00000111205.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22 	ENSMUST00000141309.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22
mm10_v2_chr3_+_5218516_5218544	1.21779	Brca1	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr7_-_19715395_19715460	1.19829	Brca1	ENSMUST00000032555.9|Tomm40|ENSMUSG00000002984.10|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENSMUST00000093552.5|Tomm40|ENSMUSG00000002984.10|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm10_v2_chr12_-_69159109_69159186	1.19786	Brca1	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr2_-_25224653_25224702	1.19291	Brca1	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chr5_-_115158169_115158180	1.15325	Brca1	ENSMUST00000053271.5|Mlec|ENSMUSG00000048578.7|malectin 	ENSMUST00000112121.1|Mlec|ENSMUSG00000048578.7|malectin
mm10_v2_chr13_-_98890974_98891035	1.14755	Brca1	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr11_-_11890368_11890379	1.13131	Brca1	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr3_-_90433603_90433636	1.12859	Brca1	ENSMUST00000029542.5|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3 	ENSMUST00000071488.3|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3
mm10_v2_chr3_+_5218589_5218614	1.12465	Brca1	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr6_-_122340499_122340510	1.10025	Brca1	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr19_+_45560569_45560644	1.10019	Brca1	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr7_+_101896817_101896961	1.09811	Brca1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr4_+_100776664_100776692	1.09505	Brca1	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr2_+_174330006_174330126	1.09377	Brca1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr10_-_84440591_84440604	1.08283	Brca1	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr7_-_44375006_44375035	1.0728	Brca1	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr6_-_125191535_125191620	1.06471	Brca1	ENSMUST00000043848.4|Ncapd2|ENSMUSG00000038252.7|non-SMC condensin I complex, subunit D2
mm10_v2_chrX_+_169685191_169685250	1.05861	Brca1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr11_+_6291607_6291655	1.05533	Brca1	ENSMUST00000003461.8|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr2_-_28916668_28916668	1.03455	Brca1	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr8_-_47990535_47990577	1.03042	Brca1	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr10_+_69534039_69534070	1.01564	Brca1	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr2_-_9883993_9883993	1.01168	Brca1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr9_-_37657189_37657312	0.993794	Brca1	ENSMUST00000117654.1|Tbrg1|ENSMUSG00000011114.11|transforming growth factor beta regulated gene 1
mm10_v2_chr13_-_49320219_49320311	0.991166	Brca1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr12_-_108894116_108894174	0.966483	Brca1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr8_-_107263248_107263248	0.958598	Brca1	ENSMUST00000080443.6|Rps18-ps3|ENSMUSG00000057657.3|ribosomal protein S18, pseudogene 3
mm10_v2_chr3_-_88951146_88951213	0.952957	Brca1	ENSMUST00000173135.1|Dap3|ENSMUSG00000068921.8|death associated protein 3
mm10_v2_chr15_+_102460076_102460108	0.944085	Brca1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr6_-_122340525_122340561	0.941379	Brca1	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr18_+_36793918_36793937	0.934441	Brca1	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr7_-_17027807_17027846	0.929418	Brca1	ENSMUST00000142597.1|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr3_+_5218546_5218561	0.927186	Brca1	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr15_-_82016134_82016170	0.919706	Brca1	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr9_+_44773027_44773100	0.918392	Brca1	ENSMUST00000125877.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr19_+_44562841_44562879	0.917202	Brca1	ENSMUST00000040455.4|Hif1an|ENSMUSG00000036450.4|hypoxia-inducible factor 1, alpha subunit inhibitor
mm10_v2_chr7_-_133122615_133122762	0.916334	Brca1	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr15_+_10952332_10952364	0.914393	Brca1	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr2_-_155945282_155945367	0.912896	Brca1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr5_+_138187485_138187521	0.912799	Brca1	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr1_+_192190771_192190821	0.910305	Brca1	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chrX_-_101222426_101222563	0.910128	Brca1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr17_+_7945653_7945653	0.90694	Brca1	ENSMUST00000097423.2|Rsph3a|ENSMUSG00000073471.2|radial spoke 3A homolog (Chlamydomonas)
mm10_v2_chr7_-_64872993_64873037	0.906808	Brca1	ENSMUST00000094331.2|Ndnl2|ENSMUSG00000070520.2|necdin-like 2
mm10_v2_chr3_-_95882031_95882074	0.897781	Brca1	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr1_+_74791516_74791516	0.873294	Brca1	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr2_-_58052832_58052870	0.865426	Brca1	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chrM_+_8600_8616	0.854653	Brca1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr17_-_33685386_33685410	0.847139	Brca1	ENSMUST00000139302.1|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000087582.5|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000114385.2|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M
mm10_v2_chr10_+_69925766_69925786	0.838398	Brca1	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr16_+_22009471_22009543	0.832873	Brca1	ENSMUST00000023561.7|Senp2|ENSMUSG00000022855.8|SUMO/sentrin specific peptidase 2
mm10_v2_chr17_+_71204647_71204693	0.823346	Brca1	ENSMUST00000126681.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr16_+_30065333_30065351	0.815921	Brca1	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr19_+_55741810_55741842	0.815017	Brca1	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr10_-_77902467_77902536	0.810278	Brca1	ENSMUST00000057608.4|Lrrc3|ENSMUSG00000051652.4|leucine rich repeat containing 3
mm10_v2_chr17_+_35841491_35841515	0.784443	Brca1	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chrM_+_9452_9468	0.76396	Brca1	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr12_+_108894272_108894317	0.759444	Brca1	ENSMUST00000167816.1|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25 	ENSMUST00000047115.7|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25
mm10_v2_chr4_-_41464816_41464892	0.759366	Brca1	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr12_+_4082596_4082638	0.743174	Brca1	ENSMUST00000049584.5|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr5_-_21701332_21701404	0.735419	Brca1	ENSMUST00000115217.1|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D 	ENSMUST00000060899.8|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D
mm10_v2_chr1_+_182124737_182124800	0.718408	Brca1	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr2_-_155582656_155582668	0.715771	Brca1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr2_-_34870921_34870980	0.707611	Brca1	ENSMUST00000028225.5|Psmd5|ENSMUSG00000026869.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm10_v2_chr17_-_47611449_47611544	0.705269	Brca1	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr12_+_103388656_103388723	0.699681	Brca1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr2_-_152831665_152831735	0.698802	Brca1	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr17_+_33909481_33909576	0.690607	Brca1	ENSMUST00000173626.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein 	ENSMUST00000174541.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein
mm10_v2_chr19_+_36083696_36083736	0.69028	Brca1	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr2_-_91183017_91183060	0.689275	Brca1	ENSMUST00000066420.5|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr17_+_35841668_35841683	0.680685	Brca1	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr13_-_100775844_100775899	0.679279	Brca1	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chr2_-_91182848_91182933	0.668403	Brca1	ENSMUST00000111370.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000111376.1|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain 	ENSMUST00000099723.2|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr3_-_138131356_138131381	0.655579	Brca1	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr19_-_7295394_7295468	0.622415	Brca1	ENSMUST00000025921.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr13_+_100651607_100651631	0.617849	Brca1	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr13_+_93304940_93305278	0.605215	Brca1	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr13_-_98891036_98891063	0.601685	Brca1	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr12_+_87266696_87266760	0.600212	Brca1	ENSMUST00000021425.6|Ahsa1|ENSMUSG00000021037.6|AHA1, activator of heat shock protein ATPase 1
mm10_v2_chr12_+_4082574_4082594	0.598994	Brca1	ENSMUST00000020986.7|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr6_-_120357342_120357400	0.564072	Brca1	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr11_+_97703394_97703455	0.563757	Brca1	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr15_+_82016369_82016419	0.563016	Brca1	ENSMUST00000069530.6|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6
mm10_v2_chrX_-_150589844_150589861	0.553228	Brca1	ENSMUST00000112725.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112720.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2
mm10_v2_chr5_-_123666682_123666695	0.534191	Brca1	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr3_-_51277470_51277514	0.533882	Brca1	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr8_+_84872105_84872112	0.527988	Brca1	ENSMUST00000136026.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2 	ENSMUST00000170296.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2
mm10_v2_chr19_+_6047081_6047104	0.520659	Brca1	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr3_-_100489324_100489354	0.50813	Brca1	ENSMUST00000061455.8|Fam46c|ENSMUSG00000044468.8|family with sequence similarity 46, member C
mm10_v2_chr7_+_27553244_27553302	0.504743	Brca1	ENSMUST00000067386.7|2310022A10Rik|ENSMUSG00000049643.9|RIKEN cDNA 2310022A10 gene
mm10_v2_chr11_-_69920581_69920630	0.501513	Brca1	ENSMUST00000108610.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr19_+_46152505_46152514	0.497042	Brca1	ENSMUST00000026254.7|Gbf1|ENSMUSG00000025224.8|golgi-specific brefeldin A-resistance factor 1
mm10_v2_chr14_-_52305056_52305130	0.496764	Brca1	ENSMUST00000174853.1|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3 	ENSMUST00000022767.9|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3
mm10_v2_chr15_-_34443508_34443640	0.487229	Brca1	ENSMUST00000079735.5|Rpl30|ENSMUSG00000058600.7|ribosomal protein L30
mm10_v2_chr3_+_96172327_96172338	0.473042	Brca1	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr17_-_6948283_6948356	0.472241	Brca1	ENSMUST00000024572.9|Rsph3b|ENSMUSG00000023806.9|radial spoke 3B homolog (Chlamydomonas)
mm10_v2_chr4_+_129058133_129058409	0.468585	Brca1	ENSMUST00000030584.4|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000168461.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000152565.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B
mm10_v2_chr10_-_128923948_128924035	0.463098	Brca1	ENSMUST00000131271.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr17_-_6655939_6655939	0.458193	Brca1	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr15_+_82016420_82016515	0.455875	Brca1	ENSMUST00000168581.1|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6 	ENSMUST00000170630.1|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6 	ENSMUST00000164779.1|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6
mm10_v2_chr5_+_136953246_136953406	0.4534	Brca1	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chr10_-_13388830_13388970	0.4336	Brca1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr11_+_82035569_82035585	0.426098	Brca1	ENSMUST00000000193.5|Ccl2|ENSMUSG00000035385.5|chemokine (C-C motif) ligand 2
mm10_v2_chr9_+_59589288_59589353	0.417858	Brca1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr10_-_13388753_13388774	0.414169	Brca1	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr4_+_148000722_148000754	0.413537	Brca1	ENSMUST00000103230.4|Nppa|ENSMUSG00000041616.9|natriuretic peptide type A
mm10_v2_chr12_+_108792946_108792988	0.408654	Brca1	ENSMUST00000021692.7|Yy1|ENSMUSG00000021264.11|YY1 transcription factor
mm10_v2_chr13_+_24943144_24943164	0.399615	Brca1	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr7_-_35056467_35056556	0.397034	Brca1	ENSMUST00000130491.1|Cebpg|ENSMUSG00000056216.8|CCAAT/enhancer binding protein (C/EBP), gamma
mm10_v2_chr7_+_51878967_51879000	0.369339	Brca1	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr6_+_14901344_14901364	0.346223	Brca1	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr13_-_95891905_95891929	0.344129	Brca1	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr17_-_28350747_28350820	0.3429	Brca1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr11_-_102230091_102230124	0.309922	Brca1	ENSMUST00000008999.5|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr7_-_30072801_30072924	0.301154	Brca1	ENSMUST00000183115.1|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82 	ENSMUST00000182919.1|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82 	ENSMUST00000183190.1|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82 	ENSMUST00000080834.8|Zfp82|ENSMUSG00000098022.1|zinc finger protein 82
mm10_v2_chr7_-_80947499_80947579	0.297161	Brca1	ENSMUST00000120285.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr7_+_16816299_16816361	0.296532	Brca1	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr17_-_15498263_15498276	0.29182	Brca1	ENSMUST00000014913.9|Psmb1|ENSMUSG00000014769.9|proteasome (prosome, macropain) subunit, beta type 1
mm10_v2_chr19_+_10204014_10204014	0.277823	Brca1	ENSMUST00000040372.7|Tmem258|ENSMUSG00000036372.8|transmembrane protein 258
mm10_v2_chr3_-_127553233_127553364	0.276735	Brca1	ENSMUST00000029588.5|Larp7|ENSMUSG00000027968.7|La ribonucleoprotein domain family, member 7
mm10_v2_chr14_-_67715585_67715681	0.275842	Brca1	ENSMUST00000163100.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000132705.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000124045.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2
mm10_v2_chr18_+_7869707_7869737	0.273516	Brca1	ENSMUST00000166062.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000169010.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr8_-_95853501_95853539	0.271033	Brca1	ENSMUST00000040481.3|Slc38a7|ENSMUSG00000036534.5|solute carrier family 38, member 7
mm10_v2_chr6_+_100833606_100833663	0.264932	Brca1	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr11_-_96916366_96916406	0.244671	Brca1	ENSMUST00000144731.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3 	ENSMUST00000127048.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr16_+_4036942_4037103	0.244242	Brca1	ENSMUST00000137748.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000006136.4|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000157044.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000120009.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I
mm10_v2_chr9_-_112187766_112187862	0.241974	Brca1	ENSMUST00000111872.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000164754.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr11_-_96916407_96916426	0.235062	Brca1	ENSMUST00000130774.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr4_+_43632185_43632185	0.221577	Brca1	ENSMUST00000107874.2|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr10_-_128923439_128923545	0.21673	Brca1	ENSMUST00000153731.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1 	ENSMUST00000026405.3|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr12_-_110695860_110695951	0.213021	Brca1	ENSMUST00000149189.1|Hsp90aa1|ENSMUSG00000021270.7|heat shock protein 90, alpha (cytosolic), class A member 1
mm10_v2_chr2_+_167932327_167932379	0.20638	Brca1	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr11_-_102230127_102230166	0.203656	Brca1	ENSMUST00000107150.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000156337.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107151.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107152.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr2_-_105399286_105399319	0.177852	Brca1	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chr3_-_61365951_61365951	0.168887	Brca1	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr18_-_47333311_47333373	0.165502	Brca1	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr19_-_12765447_12765632	0.161266	Brca1	ENSMUST00000112933.1|Cntf|ENSMUSG00000079415.2|ciliary neurotrophic factor
mm10_v2_chr8_+_25017211_25017305	0.157578	Brca1	ENSMUST00000033961.5|Tm2d2|ENSMUSG00000031556.5|TM2 domain containing 2
mm10_v2_chr7_-_80947765_80947780	0.157019	Brca1	ENSMUST00000026818.5|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000117383.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000119980.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr8_-_105295934_105296098	0.146297	Brca1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr17_+_46681038_46681184	0.138447	Brca1	ENSMUST00000002845.6|Mea1|ENSMUSG00000002768.7|male enhanced antigen 1
mm10_v2_chr6_-_120357440_120357489	0.133365	Brca1	ENSMUST00000112703.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr8_+_12915879_12915975	0.125491	Brca1	ENSMUST00000110876.2|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like 	ENSMUST00000110879.2|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr5_+_143651222_143651246	0.122361	Brca1	ENSMUST00000110727.1|Cyth3|ENSMUSG00000018001.12|cytohesin 3
mm10_v2_chr17_-_28350600_28350681	0.111204	Brca1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr7_+_25317067_25317164	0.10376	Brca1	ENSMUST00000128119.1|Megf8|ENSMUSG00000045039.9|multiple EGF-like-domains 8
mm10_v2_chr17_+_8165501_8165540	0.0990779	Brca1	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr11_+_78826575_78826618	0.0962906	Brca1	ENSMUST00000147875.2|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9 	ENSMUST00000141321.1|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9
mm10_v2_chr9_+_82829806_82829834	0.0879392	Brca1	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr11_-_30198232_30198261	0.0867685	Brca1	ENSMUST00000102838.3|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr16_-_11066141_11066165	0.0827681	Brca1	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr7_-_126503408_126503477	0.0815253	Brca1	ENSMUST00000040202.8|Atxn2l|ENSMUSG00000032637.9|ataxin 2-like
mm10_v2_chr9_+_108392820_108392843	0.0756617	Brca1	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr17_+_6430112_6430204	0.0670013	Brca1	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr14_-_70520254_70520268	0.066795	Brca1	ENSMUST00000022693.7|Bmp1|ENSMUSG00000022098.9|bone morphogenetic protein 1
mm10_v2_chr7_+_123377982_123378086	0.0594437	Brca1	ENSMUST00000033025.5|Lcmt1|ENSMUSG00000030763.6|leucine carboxyl methyltransferase 1
mm10_v2_chrM_+_7759_7927	0.0547942	Brca1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr1_-_46854046_46854079	0.0327595	Brca1	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr19_+_57452900_57452926	0.021722	Brca1	ENSMUST00000026073.6|Trub1|ENSMUSG00000025086.6|TruB pseudouridine (psi) synthase homolog 1 (E. coli) 	ENSMUST00000026072.3|Trub1|ENSMUSG00000025086.6|TruB pseudouridine (psi) synthase homolog 1 (E. coli)
