mm10_v2_chr8_-_84773381_84773427	4.96932	Foxk1_Foxj1	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chrX_+_170010744_170010744	3.45524	Foxk1_Foxj1	ENSMUST00000178789.1|Gm21887|ENSMUSG00000095562.1|predicted gene, 21887
mm10_v2_chrY_+_90785442_90785586	2.62538	Foxk1_Foxj1	ENSMUST00000177591.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000177671.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000179077.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr10_+_97482350_97482372	1.50512	Foxk1_Foxj1	ENSMUST00000163448.2|Dcn|ENSMUSG00000019929.9|decorin
mm10_v2_chr14_-_62456286_62456289	1.44019	Foxk1_Foxj1	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr16_-_36784924_36784971	1.43775	Foxk1_Foxj1	ENSMUST00000168279.1|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2 	ENSMUST00000164579.1|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2 	ENSMUST00000023616.2|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2
mm10_v2_chr12_+_112999964_112999964	1.21492	Foxk1_Foxj1	ENSMUST00000180971.1|9230104M06Rik|ENSMUSG00000097100.1|RIKEN cDNA 9230104M06 gene
mm10_v2_chr16_-_36784784_36784825	1.12359	Foxk1_Foxj1	ENSMUST00000165531.1|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2
mm10_v2_chr10_-_92165159_92165177	1.11146	Foxk1_Foxj1	ENSMUST00000182567.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000181604.2|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000181213.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr1_+_110099295_110099295	1.08397	Foxk1_Foxj1	ENSMUST00000134301.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr13_+_119606650_119606650	1.08381	Foxk1_Foxj1	ENSMUST00000178948.1|Gm21967|ENSMUSG00000094114.1|predicted gene, 21967
mm10_v2_chr19_-_34255325_34255342	1.08086	Foxk1_Foxj1	ENSMUST00000039631.8|Acta2|ENSMUSG00000035783.8|actin, alpha 2, smooth muscle, aorta
mm10_v2_chr4_-_154097105_154097173	1.06067	Foxk1_Foxj1	ENSMUST00000105643.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000133533.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000097762.4|Trp73|ENSMUSG00000029026.10|transformation related protein 73
mm10_v2_chr15_+_99006056_99006056	1.03051	Foxk1_Foxj1	ENSMUST00000079818.3|Gm8973|ENSMUSG00000064081.3|predicted gene 8973
mm10_v2_chr10_+_4611971_4612021	1.02052	Foxk1_Foxj1	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr10_-_37138863_37138937	0.969648	Foxk1_Foxj1	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr1_-_144177259_144177372	0.926023	Foxk1_Foxj1	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr1_+_86045863_86045968	0.919503	Foxk1_Foxj1	ENSMUST00000165824.1|2810459M11Rik|ENSMUSG00000026227.5|RIKEN cDNA 2810459M11 gene
mm10_v2_chr10_-_96409038_96409038	0.90874	Foxk1_Foxj1	ENSMUST00000179683.1|Gm20091|ENSMUSG00000094249.1|predicted gene, 20091
mm10_v2_chr5_-_135251209_135251242	0.889908	Foxk1_Foxj1	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr18_-_62756275_62756347	0.879508	Foxk1_Foxj1	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr1_-_97977233_97977279	0.843324	Foxk1_Foxj1	ENSMUST00000161567.1|Pam|ENSMUSG00000026335.10|peptidylglycine alpha-amidating monooxygenase
mm10_v2_chr3_-_80802789_80802840	0.791831	Foxk1_Foxj1	ENSMUST00000107745.1|Gria2|ENSMUSG00000033981.8|glutamate receptor, ionotropic, AMPA2 (alpha 2) 	ENSMUST00000075316.4|Gria2|ENSMUSG00000033981.8|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm10_v2_chr2_-_154769932_154769932	0.72182	Foxk1_Foxj1	ENSMUST00000184654.1|Gm14214|ENSMUSG00000098640.1|predicted gene 14214
mm10_v2_chr2_+_156144023_156144039	0.711581	Foxk1_Foxj1	ENSMUST00000088610.4|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1
mm10_v2_chr3_+_159495408_159495458	0.710712	Foxk1_Foxj1	ENSMUST00000120272.1|Depdc1a|ENSMUSG00000028175.9|DEP domain containing 1a 	ENSMUST00000029825.7|Depdc1a|ENSMUSG00000028175.9|DEP domain containing 1a 	ENSMUST00000106041.2|Depdc1a|ENSMUSG00000028175.9|DEP domain containing 1a
mm10_v2_chrX_+_166344692_166344770	0.706044	Foxk1_Foxj1	ENSMUST00000112223.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112224.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112229.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112228.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112227.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112226.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr13_+_4191163_4191200	0.666067	Foxk1_Foxj1	ENSMUST00000021634.2|Akr1c13|ENSMUSG00000021213.5|aldo-keto reductase family 1, member C13
mm10_v2_chr11_-_101466222_101466237	0.662335	Foxk1_Foxj1	ENSMUST00000040430.7|Vat1|ENSMUSG00000034993.7|vesicle amine transport protein 1 homolog (T californica)
mm10_v2_chr3_-_65529355_65529384	0.649685	Foxk1_Foxj1	ENSMUST00000099076.3|4931440P22Rik|ENSMUSG00000074580.5|RIKEN cDNA 4931440P22 gene
mm10_v2_chr10_+_73821857_73821883	0.649557	Foxk1_Foxj1	ENSMUST00000177128.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000064562.7|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000129404.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105426.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131321.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000126920.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000147189.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105424.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000092420.6|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105429.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131724.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152655.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000151116.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000155701.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152819.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125517.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000124046.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000149977.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000146682.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177107.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr5_+_139423151_139423186	0.646162	Foxk1_Foxj1	ENSMUST00000066211.4|Gper1|ENSMUSG00000053647.4|G protein-coupled estrogen receptor 1
mm10_v2_chr6_+_38534823_38534872	0.640868	Foxk1_Foxj1	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chrM_-_14060_14074	0.637697	Foxk1_Foxj1	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr3_-_9833653_9833679	0.635656	Foxk1_Foxj1	ENSMUST00000161949.1|Pag1|ENSMUSG00000027508.9|phosphoprotein associated with glycosphingolipid microdomains 1
mm10_v2_chr13_-_103920295_103920367	0.597396	Foxk1_Foxj1	ENSMUST00000169083.1|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr12_-_84617326_84617466	0.593338	Foxk1_Foxj1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr11_+_58948890_58948920	0.592871	Foxk1_Foxj1	ENSMUST00000078267.3|Hist3h2ba|ENSMUSG00000056895.3|histone cluster 3, H2ba
mm10_v2_chr2_+_68117713_68117713	0.572935	Foxk1_Foxj1	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr7_-_52005792_52006018	0.572223	Foxk1_Foxj1	ENSMUST00000098414.3|Svip|ENSMUSG00000074093.3|small VCP/p97-interacting protein
mm10_v2_chr2_-_148875452_148875692	0.569632	Foxk1_Foxj1	ENSMUST00000028938.6|Cst3|ENSMUSG00000027447.6|cystatin C 	ENSMUST00000144845.1|Cst3|ENSMUSG00000027447.6|cystatin C
mm10_v2_chr8_+_34807287_34807310	0.543851	Foxk1_Foxj1	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr8_+_93810832_93810843	0.528342	Foxk1_Foxj1	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chrX_-_143933204_143933311	0.526815	Foxk1_Foxj1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr10_-_130280218_130280242	0.525136	Foxk1_Foxj1	ENSMUST00000061571.3|Neurod4|ENSMUSG00000048015.3|neurogenic differentiation 4
mm10_v2_chrX_+_163911401_163911439	0.518073	Foxk1_Foxj1	ENSMUST00000140845.1|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr2_+_62664279_62664300	0.511893	Foxk1_Foxj1	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr2_-_73312701_73312724	0.506888	Foxk1_Foxj1	ENSMUST00000058615.9|Cir1|ENSMUSG00000041777.11|corepressor interacting with RBPJ, 1
mm10_v2_chrX_+_7722214_7722260	0.50687	Foxk1_Foxj1	ENSMUST00000043045.2|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000116634.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000115689.3|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000131077.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000115688.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000116633.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45
mm10_v2_chr14_+_32028989_32029044	0.497797	Foxk1_Foxj1	ENSMUST00000022460.4|Galnt15|ENSMUSG00000021903.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15
mm10_v2_chr4_-_55532453_55532485	0.492442	Foxk1_Foxj1	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr16_-_52296924_52296924	0.491784	Foxk1_Foxj1	ENSMUST00000167115.1|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr2_-_79908428_79908438	0.482173	Foxk1_Foxj1	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chrX_-_75578188_75578247	0.481975	Foxk1_Foxj1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr13_-_90905321_90905355	0.469794	Foxk1_Foxj1	ENSMUST00000109541.3|Atp6ap1l|ENSMUSG00000078958.3|ATPase, H+ transporting, lysosomal accessory protein 1-like
mm10_v2_chr1_-_179546261_179546276	0.455073	Foxk1_Foxj1	ENSMUST00000027769.5|Tfb2m|ENSMUSG00000026492.5|transcription factor B2, mitochondrial
mm10_v2_chr7_-_97417730_97417730	0.454841	Foxk1_Foxj1	ENSMUST00000043077.7|Thrsp|ENSMUSG00000035686.7|thyroid hormone responsive
mm10_v2_chr16_-_4880284_4880315	0.45361	Foxk1_Foxj1	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chrX_+_56786527_56786564	0.449709	Foxk1_Foxj1	ENSMUST00000144600.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr3_-_30793549_30793595	0.447903	Foxk1_Foxj1	ENSMUST00000180833.1|4933429H19Rik|ENSMUSG00000097786.1|RIKEN cDNA 4933429H19 gene
mm10_v2_chr2_+_136713444_136713492	0.444139	Foxk1_Foxj1	ENSMUST00000028727.4|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25 	ENSMUST00000110098.3|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25
mm10_v2_chr17_+_35076902_35077073	0.432992	Foxk1_Foxj1	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr6_+_79818031_79818031	0.431898	Foxk1_Foxj1	ENSMUST00000179797.1|Gm20594|ENSMUSG00000096887.1|predicted gene, 20594
mm10_v2_chr2_-_127792467_127792505	0.429843	Foxk1_Foxj1	ENSMUST00000135091.1|1500011K16Rik|ENSMUSG00000051319.6|RIKEN cDNA 1500011K16 gene
mm10_v2_chr10_-_92164666_92164754	0.427784	Foxk1_Foxj1	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr9_-_64022043_64022066	0.42546	Foxk1_Foxj1	ENSMUST00000041029.5|Smad6|ENSMUSG00000036867.7|SMAD family member 6
mm10_v2_chr2_+_143915273_143915337	0.425399	Foxk1_Foxj1	ENSMUST00000103172.3|Dstn|ENSMUSG00000015932.8|destrin
mm10_v2_chr8_-_8690493_8690538	0.419165	Foxk1_Foxj1	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr15_-_98918131_98918231	0.407785	Foxk1_Foxj1	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr12_-_15816762_15816881	0.405077	Foxk1_Foxj1	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr5_-_115098295_115098295	0.402089	Foxk1_Foxj1	ENSMUST00000100848.2|Gm10401|ENSMUSG00000072693.2|predicted gene 10401
mm10_v2_chr9_+_70678950_70679010	0.400587	Foxk1_Foxj1	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chrX_+_9885622_9885622	0.39813	Foxk1_Foxj1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr15_-_66969616_66969647	0.392388	Foxk1_Foxj1	ENSMUST00000170903.1|Ndrg1|ENSMUSG00000005125.6|N-myc downstream regulated gene 1 	ENSMUST00000166420.1|Ndrg1|ENSMUSG00000005125.6|N-myc downstream regulated gene 1 	ENSMUST00000005256.6|Ndrg1|ENSMUSG00000005125.6|N-myc downstream regulated gene 1 	ENSMUST00000164070.1|Ndrg1|ENSMUSG00000005125.6|N-myc downstream regulated gene 1
mm10_v2_chr14_-_62454793_62454793	0.390571	Foxk1_Foxj1	ENSMUST00000128573.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr3_+_94933041_94933073	0.387847	Foxk1_Foxj1	ENSMUST00000090839.5|Selenbp1|ENSMUSG00000068874.7|selenium binding protein 1
mm10_v2_chr9_-_60511003_60511035	0.366651	Foxk1_Foxj1	ENSMUST00000098660.3|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr4_-_82885148_82885148	0.366523	Foxk1_Foxj1	ENSMUST00000048430.3|Cer1|ENSMUSG00000038192.5|cerberus 1 homolog (Xenopus laevis)
mm10_v2_chr12_-_82496537_82496537	0.364087	Foxk1_Foxj1	ENSMUST00000179295.1|Gm5435|ENSMUSG00000094374.1|predicted gene 5435
mm10_v2_chr10_+_39420009_39420074	0.352921	Foxk1_Foxj1	ENSMUST00000157009.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr1_-_92641942_92641985	0.350424	Foxk1_Foxj1	ENSMUST00000097642.3|Myeov2|ENSMUSG00000073616.4|myeloma overexpressed 2
mm10_v2_chr7_+_19282613_19282702	0.348225	Foxk1_Foxj1	ENSMUST00000032559.9|Rtn2|ENSMUSG00000030401.9|reticulon 2 (Z-band associated protein)
mm10_v2_chr2_-_79908389_79908403	0.346899	Foxk1_Foxj1	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr10_-_81230773_81230833	0.344097	Foxk1_Foxj1	ENSMUST00000047408.4|Atcay|ENSMUSG00000034958.5|ataxia, cerebellar, Cayman type homolog (human)
mm10_v2_chrX_+_7722267_7722362	0.343787	Foxk1_Foxj1	ENSMUST00000125991.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45 	ENSMUST00000148624.1|Wdr45|ENSMUSG00000039382.5|WD repeat domain 45
mm10_v2_chr5_+_121849021_121849037	0.342377	Foxk1_Foxj1	ENSMUST00000056654.3|Fam109a|ENSMUSG00000044134.5|family with sequence similarity 109, member A
mm10_v2_chr15_-_82354280_82354291	0.338379	Foxk1_Foxj1	ENSMUST00000023085.5|Ndufa6|ENSMUSG00000022450.5|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm10_v2_chr10_-_62792243_62792368	0.328942	Foxk1_Foxj1	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr5_-_70842617_70842617	0.326647	Foxk1_Foxj1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr16_-_19706365_19706399	0.326509	Foxk1_Foxj1	ENSMUST00000081880.5|Lamp3|ENSMUSG00000041247.7|lysosomal-associated membrane protein 3
mm10_v2_chr19_+_12846773_12846781	0.324773	Foxk1_Foxj1	ENSMUST00000164001.1|Gm5244|ENSMUSG00000091014.1|predicted pseudogene 5244
mm10_v2_chr1_+_153749414_153749442	0.319268	Foxk1_Foxj1	ENSMUST00000086209.3|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr7_-_86775808_86775839	0.318931	Foxk1_Foxj1	ENSMUST00000107271.3|Folh1|ENSMUSG00000001773.7|folate hydrolase 1
mm10_v2_chr7_-_27553138_27553249	0.31766	Foxk1_Foxj1	ENSMUST00000127240.1|Pld3|ENSMUSG00000003363.9|phospholipase D family, member 3 	ENSMUST00000117095.1|Pld3|ENSMUSG00000003363.9|phospholipase D family, member 3 	ENSMUST00000117611.1|Pld3|ENSMUSG00000003363.9|phospholipase D family, member 3
mm10_v2_chr2_+_164486455_164486655	0.314762	Foxk1_Foxj1	ENSMUST00000069385.8|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENSMUST00000143690.1|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr6_-_97179100_97179159	0.31278	Foxk1_Foxj1	ENSMUST00000095664.3|Tmf1|ENSMUSG00000030059.9|TATA element modulatory factor 1
mm10_v2_chr7_+_19291070_19291124	0.304595	Foxk1_Foxj1	ENSMUST00000108468.3|Rtn2|ENSMUSG00000030401.9|reticulon 2 (Z-band associated protein)
mm10_v2_chr8_+_70673198_70673267	0.304489	Foxk1_Foxj1	ENSMUST00000034311.8|Lsm4|ENSMUSG00000031848.8|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr7_-_27985796_27985796	0.302888	Foxk1_Foxj1	ENSMUST00000099111.3|Zfp850|ENSMUSG00000074608.3|zinc finger protein 850
mm10_v2_chr16_-_44558879_44558905	0.302656	Foxk1_Foxj1	ENSMUST00000114634.1|Boc|ENSMUSG00000022687.5|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
mm10_v2_chr11_+_116434087_116434106	0.302094	Foxk1_Foxj1	ENSMUST00000057676.6|Ubald2|ENSMUSG00000050628.6|UBA-like domain containing 2
mm10_v2_chr3_-_9833617_9833638	0.300381	Foxk1_Foxj1	ENSMUST00000108384.2|Pag1|ENSMUSG00000027508.9|phosphoprotein associated with glycosphingolipid microdomains 1
mm10_v2_chr19_-_7217549_7217616	0.299404	Foxk1_Foxj1	ENSMUST00000039758.4|Cox8a|ENSMUSG00000035885.4|cytochrome c oxidase subunit VIIIa
mm10_v2_chr14_-_8318023_8318054	0.291298	Foxk1_Foxj1	ENSMUST00000120411.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr11_-_96916448_96916531	0.290913	Foxk1_Foxj1	ENSMUST00000103152.4|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr12_+_49401277_49401277	0.290221	Foxk1_Foxj1	ENSMUST00000056234.3|Gm9804|ENSMUSG00000045946.3|predicted gene 9804
mm10_v2_chr11_-_58801944_58801968	0.281928	Foxk1_Foxj1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr12_-_100725028_100725081	0.275213	Foxk1_Foxj1	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr10_-_14718191_14718228	0.273261	Foxk1_Foxj1	ENSMUST00000020016.4|Gje1|ENSMUSG00000019867.4|gap junction protein, epsilon 1
mm10_v2_chr2_-_174464063_174464105	0.265678	Foxk1_Foxj1	ENSMUST00000016396.7|Atp5e|ENSMUSG00000016252.7|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
mm10_v2_chr14_+_52110939_52110953	0.265224	Foxk1_Foxj1	ENSMUST00000111600.4|Rpgrip1|ENSMUSG00000057132.9|retinitis pigmentosa GTPase regulator interacting protein 1
mm10_v2_chr10_+_115569986_115570035	0.264782	Foxk1_Foxj1	ENSMUST00000173620.1|A930009A15Rik|ENSMUSG00000092210.1|RIKEN cDNA A930009A15 gene
mm10_v2_chr11_-_86993682_86993707	0.263333	Foxk1_Foxj1	ENSMUST00000018571.4|Ypel2|ENSMUSG00000018427.7|yippee-like 2 (Drosophila)
mm10_v2_chr10_-_57532489_57532530	0.258684	Foxk1_Foxj1	ENSMUST00000020027.4|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chrX_-_166510424_166510478	0.257896	Foxk1_Foxj1	ENSMUST00000112188.1|Tceanc|ENSMUSG00000051224.7|transcription elongation factor A (SII) N-terminal and central domain containing
mm10_v2_chr3_+_33799791_33799955	0.256795	Foxk1_Foxj1	ENSMUST00000099153.3|Ttc14|ENSMUSG00000027677.11|tetratricopeptide repeat domain 14
mm10_v2_chr4_+_12089373_12089441	0.256073	Foxk1_Foxj1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr2_-_80128834_80128996	0.255	Foxk1_Foxj1	ENSMUST00000102654.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102655.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr17_-_33718591_33718690	0.254859	Foxk1_Foxj1	ENSMUST00000174040.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173015.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000066121.6|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000172767.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173329.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2
mm10_v2_chr8_-_84237042_84237061	0.254343	Foxk1_Foxj1	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr11_-_5707658_5707708	0.24841	Foxk1_Foxj1	ENSMUST00000154330.1|Mrps24|ENSMUSG00000020477.4|mitochondrial ribosomal protein S24
mm10_v2_chr1_-_156034800_156034817	0.246315	Foxk1_Foxj1	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr1_+_92906959_92907036	0.243321	Foxk1_Foxj1	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
mm10_v2_chr18_-_74961252_74961268	0.240638	Foxk1_Foxj1	ENSMUST00000066532.4|Lipg|ENSMUSG00000053846.4|lipase, endothelial
mm10_v2_chr15_-_42676967_42676978	0.239395	Foxk1_Foxj1	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr12_-_4689926_4689926	0.239339	Foxk1_Foxj1	ENSMUST00000080062.6|Gm17541|ENSMUSG00000091732.1|predicted gene, 17541
mm10_v2_chr3_+_62338344_62338344	0.238219	Foxk1_Foxj1	ENSMUST00000079300.6|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr18_-_51865881_51865881	0.236968	Foxk1_Foxj1	ENSMUST00000091905.2|Gm4950|ENSMUSG00000069379.2|predicted pseudogene 4950
mm10_v2_chr6_-_117907753_117907761	0.233416	Foxk1_Foxj1	ENSMUST00000035534.4|4933440N22Rik|ENSMUSG00000042087.4|RIKEN cDNA 4933440N22 gene
mm10_v2_chr7_+_126950837_126950966	0.230794	Foxk1_Foxj1	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr14_+_73237891_73238007	0.228905	Foxk1_Foxj1	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr15_+_85116829_85116829	0.228534	Foxk1_Foxj1	ENSMUST00000105085.1|Gm10923|ENSMUSG00000078289.1|predicted gene 10923
mm10_v2_chr8_-_53638945_53639065	0.227032	Foxk1_Foxj1	ENSMUST00000047768.4|Neil3|ENSMUSG00000039396.4|nei like 3 (E. coli)
mm10_v2_chr2_+_164486856_164486898	0.225631	Foxk1_Foxj1	ENSMUST00000109349.2|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr18_+_37484955_37485028	0.22557	Foxk1_Foxj1	ENSMUST00000053856.4|Pcdhb17|ENSMUSG00000046387.4|protocadherin beta 17
mm10_v2_chr3_-_113630068_113630149	0.22396	Foxk1_Foxj1	ENSMUST00000092154.3|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3 	ENSMUST00000106536.1|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3 	ENSMUST00000106535.1|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3
mm10_v2_chrM_+_3906_3926	0.223877	Foxk1_Foxj1	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr10_+_25408346_25408395	0.223723	Foxk1_Foxj1	ENSMUST00000092645.6|Epb4.1l2|ENSMUSG00000019978.9|erythrocyte protein band 4.1-like 2
mm10_v2_chr9_+_114731177_114731234	0.223534	Foxk1_Foxj1	ENSMUST00000035007.8|Cmtm6|ENSMUSG00000032434.8|CKLF-like MARVEL transmembrane domain containing 6
mm10_v2_chr15_+_78406777_78406801	0.222695	Foxk1_Foxj1	ENSMUST00000169133.1|Mpst|ENSMUSG00000071711.5|mercaptopyruvate sulfurtransferase
mm10_v2_chr4_-_14621805_14621819	0.21998	Foxk1_Foxj1	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr19_+_37376359_37376422	0.217462	Foxk1_Foxj1	ENSMUST00000012587.3|Kif11|ENSMUSG00000012443.3|kinesin family member 11
mm10_v2_chr10_+_128267997_128267997	0.21186	Foxk1_Foxj1	ENSMUST00000050901.2|Apof|ENSMUSG00000047631.2|apolipoprotein F
mm10_v2_chr10_-_57532416_57532487	0.208111	Foxk1_Foxj1	ENSMUST00000169122.1|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr3_+_60501252_60501275	0.202985	Foxk1_Foxj1	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chrX_-_165004829_165004829	0.202331	Foxk1_Foxj1	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr9_+_87015537_87015537	0.20194	Foxk1_Foxj1	ENSMUST00000058846.4|Ripply2|ENSMUSG00000047897.4|ripply2 homolog (zebrafish)
mm10_v2_chr7_-_86775860_86775872	0.196676	Foxk1_Foxj1	ENSMUST00000001824.5|Folh1|ENSMUSG00000001773.7|folate hydrolase 1
mm10_v2_chr11_+_102285161_102285251	0.194071	Foxk1_Foxj1	ENSMUST00000156326.1|Tmub2|ENSMUSG00000034757.9|transmembrane and ubiquitin-like domain containing 2
mm10_v2_chr2_+_29802626_29802647	0.19373	Foxk1_Foxj1	ENSMUST00000080065.2|Slc27a4|ENSMUSG00000059316.2|solute carrier family 27 (fatty acid transporter), member 4
mm10_v2_chr5_+_148959263_148959278	0.190343	Foxk1_Foxj1	ENSMUST00000135240.1|Gm15409|ENSMUSG00000087272.1|predicted gene 15409
mm10_v2_chr2_+_61578549_61578617	0.187805	Foxk1_Foxj1	ENSMUST00000112502.1|Tank|ENSMUSG00000064289.9|TRAF family member-associated Nf-kappa B activator 	ENSMUST00000078074.2|Tank|ENSMUSG00000064289.9|TRAF family member-associated Nf-kappa B activator
mm10_v2_chr5_+_74535449_74535524	0.187723	Foxk1_Foxj1	ENSMUST00000080164.5|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113536.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000122245.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000120618.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113535.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113534.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr3_-_103791537_103791563	0.186308	Foxk1_Foxj1	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr14_+_75955003_75955016	0.185886	Foxk1_Foxj1	ENSMUST00000050120.2|Kctd4|ENSMUSG00000046523.4|potassium channel tetramerisation domain containing 4
mm10_v2_chr11_-_68853119_68853140	0.18565	Foxk1_Foxj1	ENSMUST00000018880.7|Ndel1|ENSMUSG00000018736.8|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm10_v2_chr10_+_96616998_96617015	0.185056	Foxk1_Foxj1	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr18_+_21001292_21001341	0.184996	Foxk1_Foxj1	ENSMUST00000072847.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138 	ENSMUST00000052396.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138
mm10_v2_chrM_+_2743_2761	0.184052	Foxk1_Foxj1	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr14_+_30879257_30879327	0.1837	Foxk1_Foxj1	ENSMUST00000040715.6|Mustn1|ENSMUSG00000042485.6|musculoskeletal, embryonic nuclear protein 1
mm10_v2_chr7_-_46919915_46919986	0.182584	Foxk1_Foxj1	ENSMUST00000143413.1|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101 	ENSMUST00000014546.8|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101
mm10_v2_chr1_-_120120138_120120194	0.181159	Foxk1_Foxj1	ENSMUST00000112648.1|Dbi|ENSMUSG00000026385.10|diazepam binding inhibitor 	ENSMUST00000128408.1|Dbi|ENSMUSG00000026385.10|diazepam binding inhibitor
mm10_v2_chr5_+_92331828_92331847	0.180052	Foxk1_Foxj1	ENSMUST00000125462.1|Art3|ENSMUSG00000034842.10|ADP-ribosyltransferase 3 	ENSMUST00000121096.1|Art3|ENSMUSG00000034842.10|ADP-ribosyltransferase 3 	ENSMUST00000113083.2|Art3|ENSMUSG00000034842.10|ADP-ribosyltransferase 3
mm10_v2_chr3_+_131110350_131110471	0.178644	Foxk1_Foxj1	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr9_+_65676566_65676621	0.178028	Foxk1_Foxj1	ENSMUST00000147732.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2 	ENSMUST00000136166.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2
mm10_v2_chr15_-_3995708_3995760	0.177039	Foxk1_Foxj1	ENSMUST00000046633.8|AW549877|ENSMUSG00000041935.9|expressed sequence AW549877
mm10_v2_chr1_+_85600672_85600704	0.176434	Foxk1_Foxj1	ENSMUST00000080204.4|Sp140|ENSMUSG00000070031.5|Sp140 nuclear body protein
mm10_v2_chr10_-_127522428_127522454	0.175236	Foxk1_Foxj1	ENSMUST00000026470.4|Shmt2|ENSMUSG00000025403.4|serine hydroxymethyltransferase 2 (mitochondrial)
mm10_v2_chr5_+_30666886_30666963	0.174945	Foxk1_Foxj1	ENSMUST00000144742.1|Cenpa|ENSMUSG00000029177.3|centromere protein A
mm10_v2_chr17_+_20570362_20570362	0.172022	Foxk1_Foxj1	ENSMUST00000095633.3|Gm5145|ENSMUSG00000071273.3|predicted pseudogene 5145
mm10_v2_chr7_-_19604444_19604492	0.171955	Foxk1_Foxj1	ENSMUST00000086041.5|Clasrp|ENSMUSG00000061028.6|CLK4-associating serine/arginine rich protein
mm10_v2_chr10_-_33624587_33624769	0.16989	Foxk1_Foxj1	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chr15_+_102459028_102459183	0.169831	Foxk1_Foxj1	ENSMUST00000164938.1|Prr13|ENSMUSG00000023048.7|proline rich 13 	ENSMUST00000023810.5|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr14_-_105177280_105177334	0.168515	Foxk1_Foxj1	ENSMUST00000100327.3|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26 	ENSMUST00000022715.7|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr4_+_11704439_11704457	0.168087	Foxk1_Foxj1	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr10_+_37139558_37139558	0.167397	Foxk1_Foxj1	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr9_-_65908676_65908798	0.166042	Foxk1_Foxj1	ENSMUST00000119245.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000134338.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000179395.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4
mm10_v2_chrX_+_159840463_159840481	0.163803	Foxk1_Foxj1	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chrX_-_162888426_162888473	0.161407	Foxk1_Foxj1	ENSMUST00000033723.3|Syap1|ENSMUSG00000031357.3|synapse associated protein 1
mm10_v2_chr2_-_118479635_118479711	0.1606	Foxk1_Foxj1	ENSMUST00000110862.1|Srp14|ENSMUSG00000009549.8|signal recognition particle 14 	ENSMUST00000009693.8|Srp14|ENSMUSG00000009549.8|signal recognition particle 14
mm10_v2_chr17_+_56613392_56613425	0.159508	Foxk1_Foxj1	ENSMUST00000080492.5|Rpl36|ENSMUSG00000057863.5|ribosomal protein L36
mm10_v2_chr6_-_129533267_129533275	0.157892	Foxk1_Foxj1	ENSMUST00000181594.1|1700101I11Rik|ENSMUSG00000097675.1|RIKEN cDNA 1700101I11 gene
mm10_v2_chrX_-_10216918_10216921	0.157604	Foxk1_Foxj1	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr14_+_58893465_58893506	0.15648	Foxk1_Foxj1	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr8_-_122476036_122476088	0.156337	Foxk1_Foxj1	ENSMUST00000014614.3|Rnf166|ENSMUSG00000014470.4|ring finger protein 166
mm10_v2_chr11_+_72301613_72301671	0.154627	Foxk1_Foxj1	ENSMUST00000151440.1|Xaf1|ENSMUSG00000040483.9|XIAP associated factor 1 	ENSMUST00000146233.1|Xaf1|ENSMUSG00000040483.9|XIAP associated factor 1 	ENSMUST00000140842.2|Xaf1|ENSMUSG00000040483.9|XIAP associated factor 1
mm10_v2_chr3_-_79145875_79145930	0.153856	Foxk1_Foxj1	ENSMUST00000118340.1|Rapgef2|ENSMUSG00000062232.8|Rap guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr12_-_101958148_101958246	0.153329	Foxk1_Foxj1	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr1_-_139377041_139377078	0.152976	Foxk1_Foxj1	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr9_+_65676517_65676556	0.152849	Foxk1_Foxj1	ENSMUST00000153700.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2 	ENSMUST00000046490.7|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2
mm10_v2_chr1_+_88103229_88103252	0.152137	Foxk1_Foxj1	ENSMUST00000113135.3|Ugt1a6a|ENSMUSG00000054545.11|UDP glucuronosyltransferase 1 family, polypeptide A6A 	ENSMUST00000113138.1|Ugt1a6b|ENSMUSG00000090145.1|UDP glucuronosyltransferase 1 family, polypeptide A6B
mm10_v2_chr15_-_10470490_10470527	0.150803	Foxk1_Foxj1	ENSMUST00000136591.1|Dnajc21|ENSMUSG00000044224.10|DnaJ (Hsp40) homolog, subfamily C, member 21
mm10_v2_chr8_-_41417042_41417135	0.150465	Foxk1_Foxj1	ENSMUST00000033999.6|Frg1|ENSMUSG00000031590.7|FSHD region gene 1
mm10_v2_chr3_-_54714353_54714353	0.149958	Foxk1_Foxj1	ENSMUST00000178832.1|Gm21958|ENSMUSG00000094487.1|predicted gene, 21958
mm10_v2_chr15_+_102459193_102459232	0.149831	Foxk1_Foxj1	ENSMUST00000164957.1|Prr13|ENSMUSG00000023048.7|proline rich 13 	ENSMUST00000171245.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr1_+_58505135_58505162	0.149746	Foxk1_Foxj1	ENSMUST00000160947.1|Gm15834|ENSMUSG00000085054.2|predicted gene 15834 	ENSMUST00000129740.2|Gm15834|ENSMUSG00000085054.2|predicted gene 15834 	ENSMUST00000139825.1|Gm15834|ENSMUSG00000085054.2|predicted gene 15834
mm10_v2_chr3_+_129532386_129532440	0.148686	Foxk1_Foxj1	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr5_-_137601043_137601075	0.146543	Foxk1_Foxj1	ENSMUST00000037620.7|Mospd3|ENSMUSG00000037221.7|motile sperm domain containing 3 	ENSMUST00000154708.1|Mospd3|ENSMUSG00000037221.7|motile sperm domain containing 3
mm10_v2_chr5_+_100196611_100196611	0.146069	Foxk1_Foxj1	ENSMUST00000066813.1|Gm9932|ENSMUSG00000054032.1|predicted gene 9932
mm10_v2_chr11_-_69662564_69662596	0.14566	Foxk1_Foxj1	ENSMUST00000129224.1|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1 	ENSMUST00000155200.1|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr3_+_125404292_125404340	0.145546	Foxk1_Foxj1	ENSMUST00000144344.1|Ndst4|ENSMUSG00000027971.10|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm10_v2_chr4_+_134923589_134923593	0.144313	Foxk1_Foxj1	ENSMUST00000078084.6|D4Wsu53e|ENSMUSG00000037266.12|DNA segment, Chr 4, Wayne State University 53, expressed
mm10_v2_chr9_-_44802951_44802961	0.144073	Foxk1_Foxj1	ENSMUST00000044694.6|Ttc36|ENSMUSG00000039438.6|tetratricopeptide repeat domain 36
mm10_v2_chr8_-_110902442_110902467	0.142237	Foxk1_Foxj1	ENSMUST00000041382.6|Fuk|ENSMUSG00000033703.8|fucokinase
mm10_v2_chr11_+_88047302_88047373	0.142172	Foxk1_Foxj1	ENSMUST00000139129.2|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr10_-_30655859_30655868	0.141565	Foxk1_Foxj1	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr8_+_35587780_35587825	0.140968	Foxk1_Foxj1	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr17_+_24840108_24840143	0.133699	Foxk1_Foxj1	ENSMUST00000164251.1|Hagh|ENSMUSG00000024158.11|hydroxyacyl glutathione hydrolase
mm10_v2_chr5_-_110810080_110810113	0.131639	Foxk1_Foxj1	ENSMUST00000031490.6|Ulk1|ENSMUSG00000029512.7|unc-51 like kinase 1
mm10_v2_chr12_-_31950210_31950246	0.131114	Foxk1_Foxj1	ENSMUST00000176084.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000176103.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000167458.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr11_+_101582236_101582312	0.130422	Foxk1_Foxj1	ENSMUST00000039581.7|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A 	ENSMUST00000100403.2|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A 	ENSMUST00000107194.1|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A 	ENSMUST00000128614.1|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A
mm10_v2_chr6_-_85933379_85933379	0.129903	Foxk1_Foxj1	ENSMUST00000162660.1|Nat8b|ENSMUSG00000089634.1|N-acetyltransferase 8B
mm10_v2_chr2_+_79635416_79635441	0.128925	Foxk1_Foxj1	ENSMUST00000111788.1|Ssfa2|ENSMUSG00000027007.10|sperm specific antigen 2
mm10_v2_chr17_+_46496753_46496809	0.128488	Foxk1_Foxj1	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr19_-_4012656_4012806	0.128338	Foxk1_Foxj1	ENSMUST00000134479.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000128787.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000133474.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000136921.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000042497.7|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm10_v2_chrX_+_142227923_142227951	0.127741	Foxk1_Foxj1	ENSMUST00000042329.5|Nxt2|ENSMUSG00000042271.7|nuclear transport factor 2-like export factor 2
mm10_v2_chr15_+_99392882_99392903	0.127465	Foxk1_Foxj1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr1_-_180195981_180196075	0.127008	Foxk1_Foxj1	ENSMUST00000027766.6|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3 	ENSMUST00000161814.1|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3
mm10_v2_chr9_-_106685892_106685961	0.126842	Foxk1_Foxj1	ENSMUST00000169068.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264 	ENSMUST00000046735.4|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chr19_-_42086338_42086375	0.126801	Foxk1_Foxj1	ENSMUST00000051772.8|Morn4|ENSMUSG00000049670.8|MORN repeat containing 4
mm10_v2_chr7_-_4844665_4844699	0.125314	Foxk1_Foxj1	ENSMUST00000066041.5|Shisa7|ENSMUSG00000053550.7|shisa homolog 7 (Xenopus laevis) 	ENSMUST00000172377.1|Shisa7|ENSMUSG00000053550.7|shisa homolog 7 (Xenopus laevis)
mm10_v2_chr18_+_36952621_36952766	0.123237	Foxk1_Foxj1	ENSMUST00000115661.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr12_-_31950535_31950560	0.122373	Foxk1_Foxj1	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr15_-_65014904_65014904	0.121924	Foxk1_Foxj1	ENSMUST00000110100.2|Gm21961|ENSMUSG00000079024.2|predicted gene, 21961
mm10_v2_chr4_+_40722461_40722512	0.12129	Foxk1_Foxj1	ENSMUST00000030118.3|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr3_+_32397671_32397671	0.12115	Foxk1_Foxj1	ENSMUST00000108243.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr7_-_30559828_30559842	0.121014	Foxk1_Foxj1	ENSMUST00000108164.1|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans)
mm10_v2_chr11_+_53567361_53567526	0.120247	Foxk1_Foxj1	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr17_-_24455265_24455345	0.118225	Foxk1_Foxj1	ENSMUST00000056032.7|E4f1|ENSMUSG00000024137.8|E4F transcription factor 1
mm10_v2_chrX_-_136203637_136203926	0.117986	Foxk1_Foxj1	ENSMUST00000151592.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000131510.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000066819.4|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5
mm10_v2_chr13_+_40859768_40859822	0.117669	Foxk1_Foxj1	ENSMUST00000110191.2|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr2_+_38511643_38511814	0.116829	Foxk1_Foxj1	ENSMUST00000054234.3|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112902.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112895.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6
mm10_v2_chr2_-_106003549_106003549	0.116824	Foxk1_Foxj1	ENSMUST00000102555.4|Dnajc24|ENSMUSG00000027166.8|DnaJ (Hsp40) homolog, subfamily C, member 24
mm10_v2_chr8_+_71887264_71887264	0.116478	Foxk1_Foxj1	ENSMUST00000034259.7|Zfp709|ENSMUSG00000056019.6|zinc finger protein 709
mm10_v2_chr1_+_25830657_25830657	0.116354	Foxk1_Foxj1	ENSMUST00000064487.1|Gm9884|ENSMUSG00000052558.1|predicted gene 9884
mm10_v2_chr13_-_66851513_66851513	0.115496	Foxk1_Foxj1	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr9_+_65214690_65214690	0.114119	Foxk1_Foxj1	ENSMUST00000069000.7|Parp16|ENSMUSG00000032392.10|poly (ADP-ribose) polymerase family, member 16
mm10_v2_chr10_-_18234930_18235008	0.11227	Foxk1_Foxj1	ENSMUST00000052648.8|Ccdc28a|ENSMUSG00000059554.6|coiled-coil domain containing 28A 	ENSMUST00000080860.6|Ccdc28a|ENSMUSG00000059554.6|coiled-coil domain containing 28A 	ENSMUST00000173243.1|Ccdc28a|ENSMUSG00000059554.6|coiled-coil domain containing 28A
mm10_v2_chr2_+_119047116_119047121	0.111663	Foxk1_Foxj1	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr11_-_69662625_69662642	0.110114	Foxk1_Foxj1	ENSMUST00000018905.5|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr6_-_122609964_122610087	0.109545	Foxk1_Foxj1	ENSMUST00000032211.4|Gdf3|ENSMUSG00000030117.4|growth differentiation factor 3
mm10_v2_chr15_-_75982442_75982455	0.107898	Foxk1_Foxj1	ENSMUST00000183130.1|Ccdc166|ENSMUSG00000098176.1|coiled-coil domain containing 166 	ENSMUST00000182172.1|Ccdc166|ENSMUSG00000098176.1|coiled-coil domain containing 166
mm10_v2_chrX_-_74393003_74393072	0.107596	Foxk1_Foxj1	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr11_+_78245743_78245821	0.107419	Foxk1_Foxj1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr9_+_118506226_118506318	0.107032	Foxk1_Foxj1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr4_-_116075022_116075071	0.106431	Foxk1_Foxj1	ENSMUST00000050580.4|Uqcrh|ENSMUSG00000063882.6|ubiquinol-cytochrome c reductase hinge protein 	ENSMUST00000078676.5|Uqcrh|ENSMUSG00000063882.6|ubiquinol-cytochrome c reductase hinge protein
mm10_v2_chr12_-_78983476_78983493	0.105448	Foxk1_Foxj1	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr5_-_114823460_114823475	0.10379	Foxk1_Foxj1	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr4_-_87806296_87806325	0.102524	Foxk1_Foxj1	ENSMUST00000126353.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENSMUST00000149357.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr13_+_46669517_46669545	0.102128	Foxk1_Foxj1	ENSMUST00000099547.3|C78339|ENSMUSG00000069237.8|expressed sequence C78339
mm10_v2_chr5_-_21785115_21785251	0.101243	Foxk1_Foxj1	ENSMUST00000115193.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115192.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115195.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000030771.5|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2
mm10_v2_chr1_-_119913162_119913208	0.10023	Foxk1_Foxj1	ENSMUST00000037906.5|Tmem177|ENSMUSG00000036975.5|transmembrane protein 177
mm10_v2_chr1_+_137966529_137966532	0.0995269	Foxk1_Foxj1	ENSMUST00000182158.1|A430106G13Rik|ENSMUSG00000098206.1|RIKEN cDNA A430106G13 gene
mm10_v2_chr11_-_51756378_51756618	0.0990455	Foxk1_Foxj1	ENSMUST00000109092.1|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000064297.4|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000109097.2|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae)
mm10_v2_chr18_+_37421418_37421455	0.0988451	Foxk1_Foxj1	ENSMUST00000053073.4|Pcdhb11|ENSMUSG00000051486.4|protocadherin beta 11
mm10_v2_chr5_+_24685815_24685819	0.0987936	Foxk1_Foxj1	ENSMUST00000068825.6|Nub1|ENSMUSG00000028954.7|negative regulator of ubiquitin-like proteins 1
mm10_v2_chr12_-_31351368_31351437	0.0982459	Foxk1_Foxj1	ENSMUST00000110857.3|Dld|ENSMUSG00000020664.9|dihydrolipoamide dehydrogenase
mm10_v2_chr1_+_180904274_180904343	0.0971552	Foxk1_Foxj1	ENSMUST00000027802.7|Pycr2|ENSMUSG00000026520.7|pyrroline-5-carboxylate reductase family, member 2
mm10_v2_chrX_+_71364745_71364794	0.0968191	Foxk1_Foxj1	ENSMUST00000114601.1|Mtmr1|ENSMUSG00000015214.8|myotubularin related protein 1 	ENSMUST00000146213.1|Mtmr1|ENSMUSG00000015214.8|myotubularin related protein 1 	ENSMUST00000015358.1|Mtmr1|ENSMUSG00000015214.8|myotubularin related protein 1
mm10_v2_chr2_-_176144697_176144697	0.0957143	Foxk1_Foxj1	ENSMUST00000178872.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr14_+_61607455_61607482	0.0928027	Foxk1_Foxj1	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr16_-_30550560_30550594	0.0916868	Foxk1_Foxj1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chrX_+_36195904_36195932	0.0914895	Foxk1_Foxj1	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr2_-_152332353_152332422	0.0902578	Foxk1_Foxj1	ENSMUST00000109847.2|Rbck1|ENSMUSG00000027466.9|RanBP-type and C3HC4-type zinc finger containing 1
mm10_v2_chr16_+_44943737_44943752	0.0901845	Foxk1_Foxj1	ENSMUST00000114622.3|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3 	ENSMUST00000166731.1|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3
mm10_v2_chr14_-_105177263_105177277	0.0896632	Foxk1_Foxj1	ENSMUST00000163499.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr3_-_59210881_59210883	0.0889842	Foxk1_Foxj1	ENSMUST00000040622.1|P2ry13|ENSMUSG00000036362.1|purinergic receptor P2Y, G-protein coupled 13
mm10_v2_chr4_-_139131058_139131113	0.0876605	Foxk1_Foxj1	ENSMUST00000143971.1|Minos1|ENSMUSG00000050608.5|mitochondrial inner membrane organizing system 1
mm10_v2_chr10_+_111972664_111972805	0.0867141	Foxk1_Foxj1	ENSMUST00000163048.1|Krr1|ENSMUSG00000063334.10|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENSMUST00000174653.1|Krr1|ENSMUSG00000063334.10|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm10_v2_chr12_-_3357012_3357153	0.0850146	Foxk1_Foxj1	ENSMUST00000180719.1|Gm26520|ENSMUSG00000097429.1|predicted gene, 26520
mm10_v2_chr6_+_72097561_72097630	0.084697	Foxk1_Foxj1	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr7_+_78895903_78896009	0.0845714	Foxk1_Foxj1	ENSMUST00000107425.1|Aen|ENSMUSG00000030609.12|apoptosis enhancing nuclease 	ENSMUST00000107421.1|Aen|ENSMUSG00000030609.12|apoptosis enhancing nuclease 	ENSMUST00000107423.1|Aen|ENSMUSG00000030609.12|apoptosis enhancing nuclease
mm10_v2_chr7_-_100547620_100547620	0.0827427	Foxk1_Foxj1	ENSMUST00000064334.2|D630004N19Rik|ENSMUSG00000052467.2|RIKEN cDNA D630004N19 gene
mm10_v2_chr10_+_60277627_60277692	0.0820517	Foxk1_Foxj1	ENSMUST00000105465.1|Psap|ENSMUSG00000004207.8|prosaposin 	ENSMUST00000177779.1|Psap|ENSMUSG00000004207.8|prosaposin 	ENSMUST00000179238.1|Psap|ENSMUSG00000004207.8|prosaposin 	ENSMUST00000004316.8|Psap|ENSMUSG00000004207.8|prosaposin
mm10_v2_chr4_+_11191354_11191424	0.081628	Foxk1_Foxj1	ENSMUST00000170901.1|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr5_-_5664196_5664253	0.0805108	Foxk1_Foxj1	ENSMUST00000061008.3|A330021E22Rik|ENSMUSG00000040473.9|RIKEN cDNA A330021E22 gene 	ENSMUST00000054865.6|A330021E22Rik|ENSMUSG00000040473.9|RIKEN cDNA A330021E22 gene
mm10_v2_chr19_-_45783512_45783558	0.0801703	Foxk1_Foxj1	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr17_+_34564268_34564299	0.0796171	Foxk1_Foxj1	ENSMUST00000015612.7|Notch4|ENSMUSG00000015468.8|notch 4
mm10_v2_chr5_+_121220191_121220243	0.079461	Foxk1_Foxj1	ENSMUST00000119892.2|Gm15800|ENSMUSG00000042744.10|predicted gene 15800 	ENSMUST00000042614.6|Gm15800|ENSMUSG00000042744.10|predicted gene 15800
mm10_v2_chr18_+_35598607_35598653	0.079272	Foxk1_Foxj1	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr7_+_81762925_81762943	0.078759	Foxk1_Foxj1	ENSMUST00000042166.4|Fam103a1|ENSMUSG00000038646.7|family with sequence similarity 103, member A1
mm10_v2_chr7_+_80186835_80186904	0.0782322	Foxk1_Foxj1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr2_-_50296680_50296801	0.0775778	Foxk1_Foxj1	ENSMUST00000144143.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000102769.4|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000133768.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm10_v2_chr9_+_53850243_53850257	0.0769888	Foxk1_Foxj1	ENSMUST00000048485.5|Sln|ENSMUSG00000042045.5|sarcolipin
mm10_v2_chr4_-_45108038_45108128	0.0748203	Foxk1_Foxj1	ENSMUST00000107809.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107808.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107807.1|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107810.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm10_v2_chr4_-_117496940_117497052	0.0746573	Foxk1_Foxj1	ENSMUST00000030439.8|Rnf220|ENSMUSG00000028677.12|ring finger protein 220
mm10_v2_chr7_-_5014645_5014697	0.0745181	Foxk1_Foxj1	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr19_+_23675839_23675863	0.0740771	Foxk1_Foxj1	ENSMUST00000056396.5|Gm6563|ENSMUSG00000051255.5|predicted pseudogene 6563
mm10_v2_chr1_-_58504946_58505109	0.0739622	Foxk1_Foxj1	ENSMUST00000027198.5|Orc2|ENSMUSG00000026037.8|origin recognition complex, subunit 2
mm10_v2_chrX_-_143933089_143933142	0.0737173	Foxk1_Foxj1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr4_-_154160632_154160696	0.0732524	Foxk1_Foxj1	ENSMUST00000105639.3|Tprgl|ENSMUSG00000029030.8|transformation related protein 63 regulated like 	ENSMUST00000030896.8|Tprgl|ENSMUSG00000029030.8|transformation related protein 63 regulated like
mm10_v2_chr18_+_60293372_60293387	0.0728781	Foxk1_Foxj1	ENSMUST00000171297.1|F830016B08Rik|ENSMUSG00000090942.1|RIKEN cDNA F830016B08 gene
mm10_v2_chr4_-_34882919_34882964	0.0723385	Foxk1_Foxj1	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr15_+_76343504_76343558	0.0717303	Foxk1_Foxj1	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
mm10_v2_chr8_+_70724064_70724078	0.0715764	Foxk1_Foxj1	ENSMUST00000034307.7|Pde4c|ENSMUSG00000031842.7|phosphodiesterase 4C, cAMP specific 	ENSMUST00000110095.2|Pde4c|ENSMUSG00000031842.7|phosphodiesterase 4C, cAMP specific
mm10_v2_chr7_-_80403315_80403339	0.0709153	Foxk1_Foxj1	ENSMUST00000147150.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr10_-_53694823_53694823	0.0709093	Foxk1_Foxj1	ENSMUST00000171807.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr1_+_55131317_55131331	0.0705282	Foxk1_Foxj1	ENSMUST00000162553.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr13_+_14613242_14613272	0.070392	Foxk1_Foxj1	ENSMUST00000170836.2|Psma2|ENSMUSG00000015671.10|proteasome (prosome, macropain) subunit, alpha type 2
mm10_v2_chr16_-_38550173_38550258	0.0700182	Foxk1_Foxj1	ENSMUST00000036210.6|Poglut1|ENSMUSG00000034064.8|protein O-glucosyltransferase 1
mm10_v2_chr1_+_9848270_9848285	0.0697341	Foxk1_Foxj1	ENSMUST00000171265.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr5_-_146220901_146220987	0.0696736	Foxk1_Foxj1	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr4_+_118409331_118409401	0.0694651	Foxk1_Foxj1	ENSMUST00000084319.4|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000106384.3|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000126089.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000073881.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000019229.8|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000144577.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm10_v2_chr19_-_34879452_34879465	0.0681506	Foxk1_Foxj1	ENSMUST00000036584.5|Pank1|ENSMUSG00000033610.9|pantothenate kinase 1
mm10_v2_chr3_+_129881149_129881188	0.0675903	Foxk1_Foxj1	ENSMUST00000061165.7|Pla2g12a|ENSMUSG00000027999.9|phospholipase A2, group XIIA
mm10_v2_chr19_-_20390944_20391010	0.0674513	Foxk1_Foxj1	ENSMUST00000025561.7|Anxa1|ENSMUSG00000024659.8|annexin A1
mm10_v2_chr12_-_40248073_40248086	0.0671571	Foxk1_Foxj1	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr2_+_71211706_71211794	0.0671349	Foxk1_Foxj1	ENSMUST00000112142.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112139.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112140.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2 	ENSMUST00000112138.1|Dync1i2|ENSMUSG00000027012.9|dynein cytoplasmic 1 intermediate chain 2
mm10_v2_chr11_+_23020464_23020556	0.0664925	Foxk1_Foxj1	ENSMUST00000094363.3|Fam161a|ENSMUSG00000049811.9|family with sequence similarity 161, member A 	ENSMUST00000151877.1|Fam161a|ENSMUSG00000049811.9|family with sequence similarity 161, member A
mm10_v2_chr1_+_9848375_9848398	0.065784	Foxk1_Foxj1	ENSMUST00000097826.4|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr2_+_32625431_32625442	0.0652594	Foxk1_Foxj1	ENSMUST00000113277.1|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr15_+_102460076_102460108	0.0640479	Foxk1_Foxj1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr4_+_40722912_40723001	0.0637984	Foxk1_Foxj1	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr5_+_74535535_74535558	0.063609	Foxk1_Foxj1	ENSMUST00000121950.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr9_+_113812547_113812621	0.0635022	Foxk1_Foxj1	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chr1_+_128244122_128244181	0.0617803	Foxk1_Foxj1	ENSMUST00000027592.3|Ubxn4|ENSMUSG00000026353.3|UBX domain protein 4
mm10_v2_chr8_-_47713920_47713938	0.0614648	Foxk1_Foxj1	ENSMUST00000038738.5|Cdkn2aip|ENSMUSG00000038069.5|CDKN2A interacting protein
mm10_v2_chr11_-_101302206_101302291	0.0614244	Foxk1_Foxj1	ENSMUST00000140706.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related 	ENSMUST00000170502.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related 	ENSMUST00000172233.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related 	ENSMUST00000130916.1|Becn1|ENSMUSG00000035086.7|beclin 1, autophagy related
mm10_v2_chr2_-_163645125_163645136	0.0603405	Foxk1_Foxj1	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr19_+_53329413_53329478	0.059406	Foxk1_Foxj1	ENSMUST00000025998.7|Mxi1|ENSMUSG00000025025.7|Max interacting protein 1
mm10_v2_chr18_-_43373248_43373272	0.0586739	Foxk1_Foxj1	ENSMUST00000118043.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr2_-_152332639_152332678	0.0583016	Foxk1_Foxj1	ENSMUST00000028964.7|Rbck1|ENSMUSG00000027466.9|RanBP-type and C3HC4-type zinc finger containing 1
mm10_v2_chrX_+_139217166_139217190	0.0580563	Foxk1_Foxj1	ENSMUST00000166444.1|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000170671.1|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000113041.2|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000113042.2|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1
mm10_v2_chr6_+_129533183_129533205	0.0579019	Foxk1_Foxj1	ENSMUST00000032264.6|Gabarapl1|ENSMUSG00000030161.6|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm10_v2_chr16_+_56075399_56075492	0.0574165	Foxk1_Foxj1	ENSMUST00000089362.2|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000089360.3|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000049128.6|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7
mm10_v2_chr4_-_87806276_87806294	0.0566154	Foxk1_Foxj1	ENSMUST00000148059.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr2_+_119047129_119047159	0.0561705	Foxk1_Foxj1	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr11_-_98193260_98193298	0.0561378	Foxk1_Foxj1	ENSMUST00000092735.5|Med1|ENSMUSG00000018160.9|mediator complex subunit 1 	ENSMUST00000107545.2|Med1|ENSMUSG00000018160.9|mediator complex subunit 1
mm10_v2_chr13_+_21495218_21495260	0.0556341	Foxk1_Foxj1	ENSMUST00000104942.1|AK157302|ENSMUSG00000078139.3|cDNA sequence AK157302
mm10_v2_chr13_+_43370710_43370710	0.0556013	Foxk1_Foxj1	ENSMUST00000066804.4|Sirt5|ENSMUSG00000054021.5|sirtuin 5
mm10_v2_chr5_-_100674230_100674284	0.0550389	Foxk1_Foxj1	ENSMUST00000031262.7|Coq2|ENSMUSG00000029319.7|coenzyme Q2 homolog, prenyltransferase (yeast)
mm10_v2_chr8_-_27202542_27202557	0.0545278	Foxk1_Foxj1	ENSMUST00000038174.6|Got1l1|ENSMUSG00000039720.6|glutamic-oxaloacetic transaminase 1-like 1
mm10_v2_chr3_+_94398517_94398538	0.0543652	Foxk1_Foxj1	ENSMUST00000050975.3|Lingo4|ENSMUSG00000044505.3|leucine rich repeat and Ig domain containing 4
mm10_v2_chr8_+_20567716_20567716	0.0535241	Foxk1_Foxj1	ENSMUST00000178995.1|Gm21092|ENSMUSG00000095403.1|predicted gene, 21092
mm10_v2_chr12_+_71136848_71136848	0.0534522	Foxk1_Foxj1	ENSMUST00000149564.1|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene 	ENSMUST00000045907.8|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene
mm10_v2_chr5_+_108461222_108461241	0.050675	Foxk1_Foxj1	ENSMUST00000046975.5|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3 	ENSMUST00000112597.1|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3
mm10_v2_chr1_+_75142775_75142797	0.0495336	Foxk1_Foxj1	ENSMUST00000097694.4|Fam134a|ENSMUSG00000049339.10|family with sequence similarity 134, member A
mm10_v2_chr12_-_31950170_31950197	0.0486529	Foxk1_Foxj1	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr10_-_127030813_127030840	0.0484506	Foxk1_Foxj1	ENSMUST00000040560.4|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr10_+_116177351_116177417	0.0480393	Foxk1_Foxj1	ENSMUST00000155606.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R 	ENSMUST00000128399.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr5_-_122697603_122697603	0.0479858	Foxk1_Foxj1	ENSMUST00000071235.4|Gm10064|ENSMUSG00000059352.4|predicted gene 10064
mm10_v2_chr12_-_55302974_55303014	0.0478919	Foxk1_Foxj1	ENSMUST00000021410.8|Ppp2r3c|ENSMUSG00000021022.8|protein phosphatase 2, regulatory subunit B'', gamma
mm10_v2_chr8_-_69625503_69625559	0.047152	Foxk1_Foxj1	ENSMUST00000121886.1|Zfp868|ENSMUSG00000060427.9|zinc finger protein 868
mm10_v2_chr4_+_107314363_107314397	0.0458608	Foxk1_Foxj1	ENSMUST00000075693.5|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000139527.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr4_-_14621669_14621786	0.0456937	Foxk1_Foxj1	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr19_-_58455903_58455914	0.0453766	Foxk1_Foxj1	ENSMUST00000131877.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr9_-_98601642_98601679	0.0450711	Foxk1_Foxj1	ENSMUST00000035034.8|Mrps22|ENSMUSG00000032459.8|mitochondrial ribosomal protein S22
mm10_v2_chr15_+_99392948_99393022	0.0444234	Foxk1_Foxj1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr1_+_180101144_180101144	0.0434824	Foxk1_Foxj1	ENSMUST00000133890.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr17_-_26095487_26095514	0.0429187	Foxk1_Foxj1	ENSMUST00000025007.5|Nme4|ENSMUSG00000024177.8|NME/NM23 nucleoside diphosphate kinase 4
mm10_v2_chr15_-_75048837_75048837	0.0428023	Foxk1_Foxj1	ENSMUST00000179762.1|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1 	ENSMUST00000065408.9|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1
mm10_v2_chr7_-_133123770_133123876	0.040575	Foxk1_Foxj1	ENSMUST00000164896.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000171968.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr1_+_20917856_20917874	0.0400073	Foxk1_Foxj1	ENSMUST00000167119.1|Paqr8|ENSMUSG00000025931.9|progestin and adipoQ receptor family member VIII
mm10_v2_chr2_+_3513035_3513074	0.0392286	Foxk1_Foxj1	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr15_+_99393219_99393248	0.0385956	Foxk1_Foxj1	ENSMUST00000159209.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr7_-_6331235_6331290	0.0377764	Foxk1_Foxj1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr2_-_152831665_152831735	0.0372002	Foxk1_Foxj1	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr10_+_93488766_93488774	0.0366871	Foxk1_Foxj1	ENSMUST00000129421.1|Hal|ENSMUSG00000020017.8|histidine ammonia lyase
mm10_v2_chr10_-_83534130_83534141	0.0360976	Foxk1_Foxj1	ENSMUST00000020497.7|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr7_-_34655500_34655515	0.0355814	Foxk1_Foxj1	ENSMUST00000032709.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr11_-_72266596_72266611	0.0355804	Foxk1_Foxj1	ENSMUST00000021161.6|Slc13a5|ENSMUSG00000020805.7|solute carrier family 13 (sodium-dependent citrate transporter), member 5 	ENSMUST00000140167.1|Slc13a5|ENSMUSG00000020805.7|solute carrier family 13 (sodium-dependent citrate transporter), member 5
mm10_v2_chr4_-_43499608_43499695	0.0354053	Foxk1_Foxj1	ENSMUST00000136005.1|Arhgef39|ENSMUSG00000051517.8|Rho guanine nucleotide exchange factor (GEF) 39 	ENSMUST00000054538.6|Arhgef39|ENSMUSG00000051517.8|Rho guanine nucleotide exchange factor (GEF) 39
mm10_v2_chr10_+_127421124_127421203	0.0350513	Foxk1_Foxj1	ENSMUST00000170336.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr9_-_15301555_15301607	0.0341073	Foxk1_Foxj1	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr11_+_109649376_109649437	0.0335672	Foxk1_Foxj1	ENSMUST00000106677.1|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr10_+_88201087_88201116	0.033319	Foxk1_Foxj1	ENSMUST00000020248.9|Ccdc53|ENSMUSG00000020056.10|coiled-coil domain containing 53
mm10_v2_chr2_+_175283298_175283298	0.0326171	Foxk1_Foxj1	ENSMUST00000098998.3|Gm14440|ENSMUSG00000078901.2|predicted gene 14440
mm10_v2_chr7_-_16221993_16222050	0.0321972	Foxk1_Foxj1	ENSMUST00000118795.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000119102.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000094816.2|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000163968.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34 	ENSMUST00000121123.1|Dhx34|ENSMUSG00000006019.9|DEAH (Asp-Glu-Ala-His) box polypeptide 34
mm10_v2_chr2_+_36049453_36049507	0.0312505	Foxk1_Foxj1	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr16_-_11909398_11909445	0.0303233	Foxk1_Foxj1	ENSMUST00000127972.1|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1 	ENSMUST00000121750.1|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1 	ENSMUST00000096272.4|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1 	ENSMUST00000073371.6|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1
mm10_v2_chrX_+_101640056_101640108	0.0297909	Foxk1_Foxj1	ENSMUST00000119299.1|Ogt|ENSMUSG00000034160.7|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 	ENSMUST00000044475.4|Ogt|ENSMUSG00000034160.7|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm10_v2_chr7_-_97738222_97738317	0.0296419	Foxk1_Foxj1	ENSMUST00000084986.6|Aqp11|ENSMUSG00000042797.8|aquaporin 11
mm10_v2_chr18_+_60376029_60376029	0.029198	Foxk1_Foxj1	ENSMUST00000066912.5|Iigp1|ENSMUSG00000054072.5|interferon inducible GTPase 1 	ENSMUST00000032473.6|Iigp1|ENSMUSG00000054072.5|interferon inducible GTPase 1
mm10_v2_chr3_-_146495115_146495139	0.0281317	Foxk1_Foxj1	ENSMUST00000093951.2|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr7_+_19176416_19176440	0.0276574	Foxk1_Foxj1	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr14_+_120275669_120275714	0.027654	Foxk1_Foxj1	ENSMUST00000088419.6|Mbnl2|ENSMUSG00000022139.10|muscleblind-like 2 	ENSMUST00000167459.1|Mbnl2|ENSMUSG00000022139.10|muscleblind-like 2
mm10_v2_chr2_-_151009364_151009398	0.0274148	Foxk1_Foxj1	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr7_-_103741322_103741322	0.0270758	Foxk1_Foxj1	ENSMUST00000051346.2|Olfr629|ENSMUSG00000047545.2|olfactory receptor 629
mm10_v2_chr11_-_3266377_3266423	0.0268097	Foxk1_Foxj1	ENSMUST00000020741.5|Drg1|ENSMUSG00000020457.7|developmentally regulated GTP binding protein 1
mm10_v2_chr6_+_68161415_68161415	0.0266644	Foxk1_Foxj1	ENSMUST00000168090.1|Igkv1-115|ENSMUSG00000091800.1|immunoglobulin kappa variable 1-115
mm10_v2_chr17_-_26099257_26099259	0.0261017	Foxk1_Foxj1	ENSMUST00000053575.3|Gm8186|ENSMUSG00000049124.3|predicted gene 8186
mm10_v2_chr16_-_29541483_29541597	0.0251498	Foxk1_Foxj1	ENSMUST00000057018.8|Atp13a4|ENSMUSG00000038094.9|ATPase type 13A4 	ENSMUST00000182627.1|Atp13a4|ENSMUSG00000038094.9|ATPase type 13A4
mm10_v2_chr1_-_135167606_135167681	0.0241656	Foxk1_Foxj1	ENSMUST00000027682.8|Gpr37l1|ENSMUSG00000026424.8|G protein-coupled receptor 37-like 1
mm10_v2_chr4_+_155582476_155582495	0.0239449	Foxk1_Foxj1	ENSMUST00000105612.1|Nadk|ENSMUSG00000029063.10|NAD kinase
mm10_v2_chr14_-_6266620_6266620	0.0238954	Foxk1_Foxj1	ENSMUST00000096172.5|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chr10_-_30600662_30600749	0.0238682	Foxk1_Foxj1	ENSMUST00000019927.6|Trmt11|ENSMUSG00000019792.7|tRNA methyltransferase 11
mm10_v2_chr8_+_58912257_58912257	0.0238285	Foxk1_Foxj1	ENSMUST00000160055.1|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr15_-_76656905_76656934	0.0233853	Foxk1_Foxj1	ENSMUST00000176274.1|Cyhr1|ENSMUSG00000053929.10|cysteine and histidine rich 1
mm10_v2_chr3_+_51415986_51416044	0.0229301	Foxk1_Foxj1	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr2_+_117249725_117249754	0.0218973	Foxk1_Foxj1	ENSMUST00000028825.4|Fam98b|ENSMUSG00000027349.5|family with sequence similarity 98, member B
mm10_v2_chr2_-_104028287_104028337	0.0213317	Foxk1_Foxj1	ENSMUST00000056170.3|4931422A03Rik|ENSMUSG00000046085.7|RIKEN cDNA 4931422A03 gene
mm10_v2_chr10_-_81060134_81060204	0.021181	Foxk1_Foxj1	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr12_+_76072016_76072079	0.0208699	Foxk1_Foxj1	ENSMUST00000131480.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr7_+_25619404_25619493	0.0206713	Foxk1_Foxj1	ENSMUST00000077338.5|Atp5sl|ENSMUSG00000057229.5|ATP5S-like 	ENSMUST00000085953.3|Atp5sl|ENSMUSG00000057229.5|ATP5S-like
mm10_v2_chr12_-_85270564_85270608	0.0200215	Foxk1_Foxj1	ENSMUST00000019378.6|Mlh3|ENSMUSG00000021245.8|mutL homolog 3 (E coli) 	ENSMUST00000166821.1|Mlh3|ENSMUSG00000021245.8|mutL homolog 3 (E coli)
mm10_v2_chrX_+_102119447_102119490	0.0195165	Foxk1_Foxj1	ENSMUST00000113627.3|Pin4|ENSMUSG00000079480.3|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm10_v2_chr14_-_6874257_6874257	0.0194211	Foxk1_Foxj1	ENSMUST00000179374.1|Gm3629|ENSMUSG00000093898.1|predicted gene 3629 	ENSMUST00000178298.1|Gm3667|ENSMUSG00000090691.2|predicted gene 3667
mm10_v2_chr13_-_66227573_66227573	0.0192324	Foxk1_Foxj1	ENSMUST00000167981.2|Gm10772|ENSMUSG00000091347.2|predicted gene 10772
mm10_v2_chr3_-_108562153_108562178	0.0185026	Foxk1_Foxj1	ENSMUST00000106622.2|Tmem167b|ENSMUSG00000068732.5|transmembrane protein 167B
mm10_v2_chr14_+_3825596_3825596	0.0184294	Foxk1_Foxj1	ENSMUST00000178256.1|Gm3002|ENSMUSG00000096793.1|predicted gene 3002
mm10_v2_chr11_-_51635870_51635896	0.0180761	Foxk1_Foxj1	ENSMUST00000001081.3|Rmnd5b|ENSMUSG00000001054.3|required for meiotic nuclear division 5 homolog B (S. cerevisiae)
mm10_v2_chr14_+_4741737_4741737	0.0179837	Foxk1_Foxj1	ENSMUST00000178748.1|Gm3252|ENSMUSG00000094628.1|predicted gene 3252
mm10_v2_chrX_-_100626568_100626611	0.0169644	Foxk1_Foxj1	ENSMUST00000015812.5|Pdzd11|ENSMUSG00000015668.7|PDZ domain containing 11
mm10_v2_chr5_-_113989739_113989744	0.016885	Foxk1_Foxj1	ENSMUST00000077689.7|Ssh1|ENSMUSG00000042121.10|slingshot homolog 1 (Drosophila)
mm10_v2_chr4_+_11558914_11558979	0.0166719	Foxk1_Foxj1	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr4_+_152199805_152199821	0.0163553	Foxk1_Foxj1	ENSMUST00000105652.2|Acot7|ENSMUSG00000028937.8|acyl-CoA thioesterase 7
mm10_v2_chr14_+_4198185_4198185	0.0157726	Foxk1_Foxj1	ENSMUST00000180184.1|Gm2974|ENSMUSG00000079391.4|predicted gene 2974
mm10_v2_chr4_-_103215147_103215201	0.0144701	Foxk1_Foxj1	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr19_-_32061438_32061469	0.0135047	Foxk1_Foxj1	ENSMUST00000096119.4|Asah2|ENSMUSG00000024887.9|N-acylsphingosine amidohydrolase 2
mm10_v2_chr8_+_113643206_113643231	0.0133539	Foxk1_Foxj1	ENSMUST00000034219.4|Syce1l|ENSMUSG00000033409.7|synaptonemal complex central element protein 1 like 	ENSMUST00000095173.1|Syce1l|ENSMUSG00000033409.7|synaptonemal complex central element protein 1 like
mm10_v2_chr15_-_55548164_55548164	0.0126682	Foxk1_Foxj1	ENSMUST00000165356.1|Mrpl13|ENSMUSG00000022370.7|mitochondrial ribosomal protein L13
mm10_v2_chr8_-_22166412_22166435	0.010846	Foxk1_Foxj1	ENSMUST00000033865.9|Nek3|ENSMUSG00000031478.10|NIMA (never in mitosis gene a)-related expressed kinase 3 	ENSMUST00000110730.3|Nek3|ENSMUSG00000031478.10|NIMA (never in mitosis gene a)-related expressed kinase 3
mm10_v2_chr3_-_28765364_28765389	0.0099639	Foxk1_Foxj1	ENSMUST00000094335.3|Gm6505|ENSMUSG00000070522.3|predicted pseudogene 6505
mm10_v2_chr6_+_147042755_147042797	0.00972553	Foxk1_Foxj1	ENSMUST00000036111.7|Mrps35|ENSMUSG00000040112.7|mitochondrial ribosomal protein S35
mm10_v2_chr13_+_49582745_49582778	0.00891535	Foxk1_Foxj1	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr14_+_4126066_4126066	0.00875323	Foxk1_Foxj1	ENSMUST00000167397.2|Gm8108|ENSMUSG00000091563.2|predicted gene 8108
mm10_v2_chr2_-_175131864_175131864	0.00849154	Foxk1_Foxj1	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr11_-_79296906_79296906	0.00760291	Foxk1_Foxj1	ENSMUST00000068448.2|Gm9964|ENSMUSG00000055072.2|predicted gene 9964
mm10_v2_chr5_+_138441468_138441540	0.00720789	Foxk1_Foxj1	ENSMUST00000085856.5|Zfp157|ENSMUSG00000036898.10|zinc finger protein 157 	ENSMUST00000110912.1|Zfp157|ENSMUSG00000036898.10|zinc finger protein 157 	ENSMUST00000100524.2|Zfp157|ENSMUSG00000036898.10|zinc finger protein 157
mm10_v2_chr14_+_4665094_4665094	0.00711899	Foxk1_Foxj1	ENSMUST00000169675.2|Gm3239|ENSMUSG00000090872.2|predicted gene 3239
mm10_v2_chr10_+_128270546_128270577	0.00695269	Foxk1_Foxj1	ENSMUST00000105238.3|Stat2|ENSMUSG00000040033.9|signal transducer and activator of transcription 2 	ENSMUST00000085708.2|Stat2|ENSMUSG00000040033.9|signal transducer and activator of transcription 2
mm10_v2_chr3_-_130709419_130709451	0.00666068	Foxk1_Foxj1	ENSMUST00000043937.7|Ostc|ENSMUSG00000041084.7|oligosaccharyltransferase complex subunit
mm10_v2_chr6_-_39377681_39377710	0.00628797	Foxk1_Foxj1	ENSMUST00000090243.4|Slc37a3|ENSMUSG00000029924.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm10_v2_chr11_-_102156339_102156414	0.00624664	Foxk1_Foxj1	ENSMUST00000021296.6|Tmem101|ENSMUSG00000020921.6|transmembrane protein 101
mm10_v2_chr10_-_112928974_112929026	0.0056732	Foxk1_Foxj1	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr13_+_60602182_60602231	0.00521512	Foxk1_Foxj1	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr2_-_175133322_175133322	0.00480648	Foxk1_Foxj1	ENSMUST00000099029.3|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr12_-_65073927_65073954	0.00475714	Foxk1_Foxj1	ENSMUST00000021332.8|Fkbp3|ENSMUSG00000020949.8|FK506 binding protein 3
mm10_v2_chr9_-_107872403_107872422	0.00459106	Foxk1_Foxj1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr7_+_81762947_81763050	0.00453874	Foxk1_Foxj1	ENSMUST00000133034.1|Fam103a1|ENSMUSG00000038646.7|family with sequence similarity 103, member A1
mm10_v2_chr19_+_4962306_4962332	0.00447097	Foxk1_Foxj1	ENSMUST00000025836.4|Mrpl11|ENSMUSG00000024902.4|mitochondrial ribosomal protein L11
mm10_v2_chr9_+_21337828_21337859	0.00410566	Foxk1_Foxj1	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr6_-_83831736_83831750	0.00395607	Foxk1_Foxj1	ENSMUST00000058383.8|Paip2b|ENSMUSG00000045896.8|poly(A) binding protein interacting protein 2B
mm10_v2_chr7_+_133637543_133637559	0.00363602	Foxk1_Foxj1	ENSMUST00000051169.6|2700050L05Rik|ENSMUSG00000039990.9|RIKEN cDNA 2700050L05 gene
mm10_v2_chr10_+_127420867_127420916	0.00297357	Foxk1_Foxj1	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr16_-_36666067_36666086	0.00249156	Foxk1_Foxj1	ENSMUST00000089620.4|Cd86|ENSMUSG00000022901.7|CD86 antigen
mm10_v2_chr5_+_115279666_115279716	0.00244352	Foxk1_Foxj1	ENSMUST00000040421.4|Coq5|ENSMUSG00000041733.4|coenzyme Q5 homolog, methyltransferase (yeast)
mm10_v2_chr12_+_52097737_52097775	0.001943	Foxk1_Foxj1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr8_-_61902669_61902713	0.00104417	Foxk1_Foxj1	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr11_-_21572193_21572211	0.000936594	Foxk1_Foxj1	ENSMUST00000102874.4|Mdh1|ENSMUSG00000020321.9|malate dehydrogenase 1, NAD (soluble)
mm10_v2_chr3_-_106167564_106167564	0.000480355	Foxk1_Foxj1	ENSMUST00000063062.8|Chi3l3|ENSMUSG00000040809.10|chitinase 3-like 3
mm10_v2_chr7_+_127904079_127904125	0.000247325	Foxk1_Foxj1	ENSMUST00000071056.7|Bckdk|ENSMUSG00000030802.8|branched chain ketoacid dehydrogenase kinase
mm10_v2_chr3_+_106034661_106034692	0.000203898	Foxk1_Foxj1	ENSMUST00000170669.2|Gm4540|ENSMUSG00000092072.2|predicted gene 4540
