mm10_v2_chr16_+_91269759_91269778	10.9814	Gli3_Zic1	ENSMUST00000056882.5|Olig1|ENSMUSG00000046160.5|oligodendrocyte transcription factor 1
mm10_v2_chr9_+_50752758_50752894	7.91318	Gli3_Zic1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr7_-_100656953_100657103	7.35277	Gli3_Zic1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr4_-_148130678_148130706	7.09053	Gli3_Zic1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr10_-_127341583_127341614	6.83143	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr9_-_54661870_54661912	6.04867	Gli3_Zic1	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr4_-_68954351_68954397	5.9538	Gli3_Zic1	ENSMUST00000030036.5|Brinp1|ENSMUSG00000028351.5|bone morphogenic protein/retinoic acid inducible neural specific 1
mm10_v2_chrX_-_16911774_16911774	5.89281	Gli3_Zic1	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr9_-_54661666_54661716	5.77858	Gli3_Zic1	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr6_-_101377342_101377388	5.62478	Gli3_Zic1	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr8_-_105966038_105966120	5.5822	Gli3_Zic1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr6_-_101377897_101378016	5.28046	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chrX_+_101299143_101299201	4.9707	Gli3_Zic1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr2_-_29253001_29253013	4.67627	Gli3_Zic1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chr18_-_38601268_38601355	4.64472	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr6_-_115251839_115251867	4.62546	Gli3_Zic1	ENSMUST00000032462.6|Timp4|ENSMUSG00000030317.6|tissue inhibitor of metalloproteinase 4
mm10_v2_chr6_+_86195214_86195251	4.59105	Gli3_Zic1	ENSMUST00000032066.9|Tgfa|ENSMUSG00000029999.9|transforming growth factor alpha
mm10_v2_chrX_+_101299207_101299218	4.48517	Gli3_Zic1	ENSMUST00000065858.2|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr6_-_125494754_125494791	4.26404	Gli3_Zic1	ENSMUST00000032492.8|Cd9|ENSMUSG00000030342.8|CD9 antigen
mm10_v2_chr1_-_135167606_135167681	4.16336	Gli3_Zic1	ENSMUST00000027682.8|Gpr37l1|ENSMUSG00000026424.8|G protein-coupled receptor 37-like 1
mm10_v2_chr8_+_70501116_70501172	4.05892	Gli3_Zic1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr7_-_19698383_19698407	3.97634	Gli3_Zic1	ENSMUST00000173739.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chr16_-_28445227_28445395	3.88503	Gli3_Zic1	ENSMUST00000100024.1|Fgf12|ENSMUSG00000022523.9|fibroblast growth factor 12
mm10_v2_chr10_-_64090265_64090297	3.77598	Gli3_Zic1	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr2_+_35282380_35282442	3.67703	Gli3_Zic1	ENSMUST00000028239.6|Gsn|ENSMUSG00000026879.8|gelsolin
mm10_v2_chr7_+_24370255_24370312	3.6012	Gli3_Zic1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr18_+_86394952_86394968	3.23787	Gli3_Zic1	ENSMUST00000058829.2|Neto1|ENSMUSG00000050321.2|neuropilin (NRP) and tolloid (TLL)-like 1
mm10_v2_chr10_-_64090241_64090262	3.23474	Gli3_Zic1	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr1_-_133801031_133801041	3.07917	Gli3_Zic1	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr3_+_105452326_105452365	3.02267	Gli3_Zic1	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr1_-_134234492_134234578	2.94923	Gli3_Zic1	ENSMUST00000169927.1|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr14_-_55560340_55560406	2.92545	Gli3_Zic1	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr6_-_119330723_119330800	2.85222	Gli3_Zic1	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr6_-_113531575_113531667	2.76884	Gli3_Zic1	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr2_+_102658640_102658669	2.75817	Gli3_Zic1	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr11_+_69765970_69766027	2.74174	Gli3_Zic1	ENSMUST00000108642.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000156932.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr1_-_134235420_134235443	2.73312	Gli3_Zic1	ENSMUST00000038191.6|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor 	ENSMUST00000086465.4|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr3_+_45378396_45378413	2.6432	Gli3_Zic1	ENSMUST00000166126.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000170695.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000171554.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10
mm10_v2_chr5_+_71699918_71699949	2.62067	Gli3_Zic1	ENSMUST00000031122.7|Gabrb1|ENSMUSG00000029212.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm10_v2_chr7_-_79131018_79131018	2.51129	Gli3_Zic1	ENSMUST00000032827.7|Hapln3|ENSMUSG00000030606.7|hyaluronan and proteoglycan link protein 3
mm10_v2_chr15_-_99820072_99820154	2.50844	Gli3_Zic1	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr15_-_78718113_78718113	2.50254	Gli3_Zic1	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr15_-_56694525_56694554	2.46741	Gli3_Zic1	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr5_+_3343893_3343945	2.44823	Gli3_Zic1	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr11_+_101246405_101246567	2.43628	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr1_-_69108039_69108064	2.37656	Gli3_Zic1	ENSMUST00000121473.1|Erbb4|ENSMUSG00000062209.9|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm10_v2_chr14_-_30353468_30353535	2.33527	Gli3_Zic1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr3_+_68494208_68494268	2.31063	Gli3_Zic1	ENSMUST00000182719.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr4_+_144893077_144893103	2.30069	Gli3_Zic1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr9_+_86695542_86695542	2.2857	Gli3_Zic1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr17_+_37050631_37050674	2.20772	Gli3_Zic1	ENSMUST00000172792.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1 	ENSMUST00000174347.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr11_+_100415722_100415766	2.17562	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chr3_+_27984145_27984314	2.17355	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr2_-_125723387_125723537	2.15266	Gli3_Zic1	ENSMUST00000042246.7|Shc4|ENSMUSG00000035109.8|SHC (Src homology 2 domain containing) family, member 4
mm10_v2_chr4_+_123233556_123233556	2.14226	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr19_+_5740885_5740904	2.08266	Gli3_Zic1	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chrX_+_101383726_101383741	2.0241	Gli3_Zic1	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr14_+_84443553_84443568	1.97789	Gli3_Zic1	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr8_+_54954728_54954820	1.96063	Gli3_Zic1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr8_-_105637403_105637497	1.95978	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr12_+_73997749_73997817	1.94162	Gli3_Zic1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr18_+_5593566_5593602	1.91324	Gli3_Zic1	ENSMUST00000160910.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr8_+_76902277_76902476	1.91222	Gli3_Zic1	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr13_-_54611274_54611297	1.91182	Gli3_Zic1	ENSMUST00000049575.7|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr9_-_56418023_56418052	1.89695	Gli3_Zic1	ENSMUST00000061552.8|C230081A13Rik|ENSMUSG00000074305.3|RIKEN cDNA C230081A13 gene
mm10_v2_chr16_+_43503607_43503642	1.87498	Gli3_Zic1	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_-_144527341_144527424	1.8065	Gli3_Zic1	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chrX_-_7574120_7574312	1.79905	Gli3_Zic1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr2_+_70562007_70562042	1.79312	Gli3_Zic1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr4_+_124657646_124657656	1.79249	Gli3_Zic1	ENSMUST00000053491.7|Pou3f1|ENSMUSG00000090125.2|POU domain, class 3, transcription factor 1
mm10_v2_chr13_-_54611332_54611387	1.7622	Gli3_Zic1	ENSMUST00000091609.4|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr9_-_58158498_58158554	1.75688	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr7_+_57591147_57591191	1.72361	Gli3_Zic1	ENSMUST00000039697.7|Gabrb3|ENSMUSG00000033676.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm10_v2_chr1_-_125912160_125912214	1.67104	Gli3_Zic1	ENSMUST00000159417.1|Lypd1|ENSMUSG00000026344.3|Ly6/Plaur domain containing 1
mm10_v2_chr15_-_100584075_100584075	1.67036	Gli3_Zic1	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr11_-_100939540_100939566	1.66894	Gli3_Zic1	ENSMUST00000127638.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr1_+_153900572_153900606	1.66306	Gli3_Zic1	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr11_+_101246960_101247093	1.62964	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr11_-_100939457_100939484	1.61833	Gli3_Zic1	ENSMUST00000138438.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr14_+_55560480_55560533	1.60601	Gli3_Zic1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr5_+_26817357_26817428	1.60445	Gli3_Zic1	ENSMUST00000071500.6|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr9_+_100643448_100643542	1.59569	Gli3_Zic1	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr12_+_95692212_95692246	1.5937	Gli3_Zic1	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr11_-_60352869_60352905	1.58484	Gli3_Zic1	ENSMUST00000095254.5|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102683.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093048.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093046.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000064019.8|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102682.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken)
mm10_v2_chr1_-_22805994_22806007	1.57885	Gli3_Zic1	ENSMUST00000097808.4|Rims1|ENSMUSG00000041670.9|regulating synaptic membrane exocytosis 1
mm10_v2_chr2_-_77170592_77170645	1.57482	Gli3_Zic1	ENSMUST00000164114.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141 	ENSMUST00000049544.7|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chrX_+_163908982_163909017	1.56837	Gli3_Zic1	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr9_+_100643605_100643626	1.5648	Gli3_Zic1	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr13_-_117025505_117025541	1.56152	Gli3_Zic1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr7_+_5057161_5057197	1.5548	Gli3_Zic1	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr8_-_85840877_85840957	1.55338	Gli3_Zic1	ENSMUST00000034140.7|Itfg1|ENSMUSG00000031703.7|integrin alpha FG-GAP repeat containing 1
mm10_v2_chr17_+_37045980_37046080	1.55128	Gli3_Zic1	ENSMUST00000174456.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr11_-_100939357_100939456	1.51786	Gli3_Zic1	ENSMUST00000092671.5|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3 	ENSMUST00000103114.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr17_+_86963077_86963094	1.50707	Gli3_Zic1	ENSMUST00000024956.8|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr12_+_4234023_4234066	1.50079	Gli3_Zic1	ENSMUST00000179139.1|Ptrhd1|ENSMUSG00000096199.1|peptidyl-tRNA hydrolase domain containing 1
mm10_v2_chr9_+_100643755_100643770	1.4886	Gli3_Zic1	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr7_+_128246812_128246948	1.48537	Gli3_Zic1	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr11_-_70229677_70229761	1.47815	Gli3_Zic1	ENSMUST00000153449.1|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B 	ENSMUST00000000326.5|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B
mm10_v2_chr11_+_69095217_69095289	1.4511	Gli3_Zic1	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr7_+_99535439_99535498	1.44841	Gli3_Zic1	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr9_-_79793378_79793430	1.43843	Gli3_Zic1	ENSMUST00000034878.5|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr2_-_39190687_39190746	1.42284	Gli3_Zic1	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr3_+_28263205_28263215	1.42192	Gli3_Zic1	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr9_-_79793507_79793519	1.41845	Gli3_Zic1	ENSMUST00000120690.1|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr7_+_99268338_99268388	1.40334	Gli3_Zic1	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr18_-_78142119_78142154	1.40112	Gli3_Zic1	ENSMUST00000160639.1|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1
mm10_v2_chr16_+_17561885_17562042	1.38975	Gli3_Zic1	ENSMUST00000171002.1|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6 	ENSMUST00000023441.4|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6
mm10_v2_chr11_+_70647258_70647294	1.38189	Gli3_Zic1	ENSMUST00000037534.7|Rnf167|ENSMUSG00000040746.9|ring finger protein 167
mm10_v2_chrX_+_10717451_10717491	1.37246	Gli3_Zic1	ENSMUST00000156321.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr8_-_105637350_105637392	1.37072	Gli3_Zic1	ENSMUST00000182863.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chrX_+_10717390_10717450	1.36743	Gli3_Zic1	ENSMUST00000115524.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) 	ENSMUST00000008179.6|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr1_-_153900198_153900210	1.36733	Gli3_Zic1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr4_+_48045144_48045160	1.36519	Gli3_Zic1	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr10_+_40629987_40630053	1.35929	Gli3_Zic1	ENSMUST00000019977.7|Ddo|ENSMUSG00000063428.7|D-aspartate oxidase
mm10_v2_chr14_+_70530819_70530847	1.35504	Gli3_Zic1	ENSMUST00000047331.6|Lgi3|ENSMUSG00000033595.6|leucine-rich repeat LGI family, member 3
mm10_v2_chr5_-_75044562_75044774	1.35048	Gli3_Zic1	ENSMUST00000075452.5|Chic2|ENSMUSG00000029229.7|cysteine-rich hydrophobic domain 2
mm10_v2_chr1_+_131827977_131828019	1.34282	Gli3_Zic1	ENSMUST00000086559.6|Slc41a1|ENSMUSG00000013275.9|solute carrier family 41, member 1
mm10_v2_chr6_+_125494419_125494454	1.3427	Gli3_Zic1	ENSMUST00000181266.1|Gm26728|ENSMUSG00000097114.1|predicted gene, 26728
mm10_v2_chr7_+_35119285_35119301	1.33868	Gli3_Zic1	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr4_-_62208426_62208487	1.33568	Gli3_Zic1	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr7_+_5056856_5056916	1.31705	Gli3_Zic1	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr14_+_45351473_45351473	1.30505	Gli3_Zic1	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr17_+_86963279_86963303	1.30393	Gli3_Zic1	ENSMUST00000139344.1|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr4_+_133011506_133011546	1.3033	Gli3_Zic1	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr16_-_85803106_85803121	1.29118	Gli3_Zic1	ENSMUST00000023610.8|Adamts1|ENSMUSG00000022893.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm10_v2_chr7_+_128246953_128246993	1.27354	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr2_-_45110241_45110265	1.26372	Gli3_Zic1	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr1_+_135729147_135729234	1.25797	Gli3_Zic1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr16_-_44016387_44016436	1.25056	Gli3_Zic1	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr15_-_95528228_95528266	1.24395	Gli3_Zic1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chrX_+_163909132_163909169	1.24063	Gli3_Zic1	ENSMUST00000033734.7|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit 	ENSMUST00000112294.2|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr18_+_52767994_52768149	1.2341	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr1_+_191906743_191906767	1.23363	Gli3_Zic1	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr6_-_118780324_118780324	1.22272	Gli3_Zic1	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr9_+_77917364_77917386	1.22082	Gli3_Zic1	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr1_-_64121456_64121491	1.21796	Gli3_Zic1	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr2_+_158667119_158667130	1.20729	Gli3_Zic1	ENSMUST00000045503.4|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr13_-_9765137_9765321	1.20064	Gli3_Zic1	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr19_+_42045792_42045897	1.19531	Gli3_Zic1	ENSMUST00000172244.1|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1 	ENSMUST00000081714.4|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1
mm10_v2_chr10_+_40349265_40349387	1.18287	Gli3_Zic1	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr17_+_37045963_37045975	1.16914	Gli3_Zic1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr2_+_31572775_31572841	1.16037	Gli3_Zic1	ENSMUST00000137889.1|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr13_-_63565520_63565520	1.15811	Gli3_Zic1	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr15_+_40655020_40655054	1.15421	Gli3_Zic1	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr7_-_84605819_84605827	1.1521	Gli3_Zic1	ENSMUST00000032865.9|Fah|ENSMUSG00000030630.9|fumarylacetoacetate hydrolase
mm10_v2_chr14_+_55560904_55560974	1.1395	Gli3_Zic1	ENSMUST00000072530.4|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000128490.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr4_-_120287349_120287349	1.12954	Gli3_Zic1	ENSMUST00000102656.3|Foxo6|ENSMUSG00000052135.8|forkhead box O6
mm10_v2_chr7_+_25267669_25267723	1.11798	Gli3_Zic1	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr11_+_87760533_87760587	1.11655	Gli3_Zic1	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr6_-_35539765_35539888	1.1012	Gli3_Zic1	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr5_-_34187670_34187749	1.08707	Gli3_Zic1	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr19_-_32388462_32388512	1.07463	Gli3_Zic1	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr7_-_99626936_99627103	1.07044	Gli3_Zic1	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr1_+_195017399_195017431	1.07016	Gli3_Zic1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr7_+_73391160_73391296	1.04899	Gli3_Zic1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr4_-_70534904_70534987	1.04138	Gli3_Zic1	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr17_-_65772686_65772752	1.03092	Gli3_Zic1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr11_+_60353324_60353408	1.02012	Gli3_Zic1	ENSMUST00000070805.6|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000094140.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108723.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108722.4|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48
mm10_v2_chr16_+_20733104_20733158	1.00681	Gli3_Zic1	ENSMUST00000115423.1|Chrd|ENSMUSG00000006958.7|chordin 	ENSMUST00000007171.6|Chrd|ENSMUSG00000006958.7|chordin
mm10_v2_chr2_-_160872985_160873009	1.00413	Gli3_Zic1	ENSMUST00000109460.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3 	ENSMUST00000127201.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr13_+_54949388_54949481	0.990216	Gli3_Zic1	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr1_-_165460430_165460487	0.988474	Gli3_Zic1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr19_-_4698315_4698315	0.983219	Gli3_Zic1	ENSMUST00000096325.3|Gm960|ENSMUSG00000071691.4|predicted gene 960
mm10_v2_chr16_-_91011093_91011113	0.970106	Gli3_Zic1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr16_-_91011308_91011431	0.961211	Gli3_Zic1	ENSMUST00000121759.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr3_-_116007399_116007411	0.960609	Gli3_Zic1	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr3_+_79885930_79886002	0.952049	Gli3_Zic1	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr7_+_5056706_5056741	0.941854	Gli3_Zic1	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr5_+_143370092_143370118	0.941408	Gli3_Zic1	ENSMUST00000120825.1|Grid2ip|ENSMUSG00000010825.11|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
mm10_v2_chr1_+_125561010_125561095	0.939237	Gli3_Zic1	ENSMUST00000027580.4|Slc35f5|ENSMUSG00000026342.4|solute carrier family 35, member F5
mm10_v2_chr3_+_116007457_116007540	0.938328	Gli3_Zic1	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chr11_+_4135233_4135282	0.924524	Gli3_Zic1	ENSMUST00000124670.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr7_-_80401707_80401754	0.922673	Gli3_Zic1	ENSMUST00000120753.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr18_-_35662180_35662195	0.909524	Gli3_Zic1	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chrX_-_9662950_9663003	0.906134	Gli3_Zic1	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr1_-_191907527_191907527	0.89606	Gli3_Zic1	ENSMUST00000069573.5|1700034H15Rik|ENSMUSG00000055833.8|RIKEN cDNA 1700034H15 gene
mm10_v2_chr13_+_54575020_54575093	0.89277	Gli3_Zic1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr7_-_81454751_81454764	0.892393	Gli3_Zic1	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr5_-_32746317_32746411	0.881406	Gli3_Zic1	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr6_+_48395652_48395688	0.878113	Gli3_Zic1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr3_+_106547693_106547888	0.871486	Gli3_Zic1	ENSMUST00000117469.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000067630.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000134396.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000144746.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000121034.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000029507.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000132923.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000151465.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2
mm10_v2_chr15_+_99392882_99392903	0.864192	Gli3_Zic1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr2_-_150668198_150668258	0.862776	Gli3_Zic1	ENSMUST00000028944.3|Acss1|ENSMUSG00000027452.5|acyl-CoA synthetase short-chain family member 1
mm10_v2_chr13_-_9764943_9764994	0.855448	Gli3_Zic1	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr11_+_53519725_53519800	0.854209	Gli3_Zic1	ENSMUST00000108987.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000121334.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000117061.1|Sept8|ENSMUSG00000018398.12|septin 8
mm10_v2_chr10_-_93311073_93311161	0.851921	Gli3_Zic1	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr2_-_119477613_119477705	0.84623	Gli3_Zic1	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr18_-_38918642_38918771	0.842461	Gli3_Zic1	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr11_+_72796164_72796246	0.835434	Gli3_Zic1	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr12_+_44328882_44328954	0.832402	Gli3_Zic1	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr9_+_62858085_62858138	0.82805	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chrX_+_140956892_140956923	0.827118	Gli3_Zic1	ENSMUST00000112971.1|Atg4a|ENSMUSG00000079418.3|autophagy related 4A, cysteine peptidase
mm10_v2_chrX_+_159697308_159697331	0.825862	Gli3_Zic1	ENSMUST00000123433.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chrX_-_166585679_166585737	0.819704	Gli3_Zic1	ENSMUST00000000412.2|Egfl6|ENSMUSG00000000402.2|EGF-like-domain, multiple 6
mm10_v2_chr6_+_110645572_110645588	0.81935	Gli3_Zic1	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chrX_+_73064787_73064787	0.813598	Gli3_Zic1	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr10_+_39612934_39612934	0.810775	Gli3_Zic1	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr2_-_45110336_45110487	0.798082	Gli3_Zic1	ENSMUST00000028229.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000152232.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr15_+_99392948_99393022	0.781339	Gli3_Zic1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr11_+_78245743_78245821	0.776382	Gli3_Zic1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr2_-_168230353_168230386	0.770399	Gli3_Zic1	ENSMUST00000154111.1|Dpm1|ENSMUSG00000078919.4|dolichol-phosphate (beta-D) mannosyltransferase 1
mm10_v2_chr11_+_116030304_116030385	0.765939	Gli3_Zic1	ENSMUST00000021116.5|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila) 	ENSMUST00000106452.1|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila)
mm10_v2_chr5_+_105519388_105519425	0.752467	Gli3_Zic1	ENSMUST00000067924.6|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C 	ENSMUST00000150981.1|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C
mm10_v2_chr3_-_104511812_104511933	0.75176	Gli3_Zic1	ENSMUST00000046316.6|Lrig2|ENSMUSG00000032913.9|leucine-rich repeats and immunoglobulin-like domains 2
mm10_v2_chr1_+_167598384_167598411	0.750702	Gli3_Zic1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr11_-_42000284_42000356	0.749687	Gli3_Zic1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr11_+_72796254_72796268	0.746657	Gli3_Zic1	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr8_+_85840971_85841028	0.743964	Gli3_Zic1	ENSMUST00000053771.7|Phkb|ENSMUSG00000036879.9|phosphorylase kinase beta 	ENSMUST00000161850.1|Phkb|ENSMUSG00000036879.9|phosphorylase kinase beta
mm10_v2_chr9_-_108190352_108190420	0.732131	Gli3_Zic1	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr6_+_113531675_113531721	0.732071	Gli3_Zic1	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr9_-_105495037_105495117	0.720752	Gli3_Zic1	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr1_-_153332724_153332804	0.718933	Gli3_Zic1	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr8_-_34965631_34965714	0.716746	Gli3_Zic1	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr19_+_38481057_38481121	0.715218	Gli3_Zic1	ENSMUST00000182481.1|Plce1|ENSMUSG00000024998.11|phospholipase C, epsilon 1
mm10_v2_chr6_-_28830345_28830345	0.706664	Gli3_Zic1	ENSMUST00000171353.1|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chrX_-_167382747_167382760	0.703949	Gli3_Zic1	ENSMUST00000026839.4|Prps2|ENSMUSG00000025742.5|phosphoribosyl pyrophosphate synthetase 2
mm10_v2_chr12_-_70227622_70227683	0.702218	Gli3_Zic1	ENSMUST00000071250.6|Pygl|ENSMUSG00000021069.10|liver glycogen phosphorylase
mm10_v2_chr3_-_89245159_89245199	0.701144	Gli3_Zic1	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr8_-_69887687_69887687	0.689966	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr16_-_30550560_30550594	0.682201	Gli3_Zic1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr19_-_5106967_5107023	0.666165	Gli3_Zic1	ENSMUST00000025804.5|Rab1b|ENSMUSG00000024870.5|RAB1B, member RAS oncogene family
mm10_v2_chr4_-_151108244_151108303	0.656481	Gli3_Zic1	ENSMUST00000131948.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr16_+_23107413_23107479	0.656335	Gli3_Zic1	ENSMUST00000023599.6|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000168891.1|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr18_-_43373248_43373272	0.654843	Gli3_Zic1	ENSMUST00000118043.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr1_-_64121389_64121452	0.654108	Gli3_Zic1	ENSMUST00000055001.3|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr14_-_56811716_56811716	0.644869	Gli3_Zic1	ENSMUST00000039812.9|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5 	ENSMUST00000111285.2|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr11_+_115154139_115154194	0.643618	Gli3_Zic1	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr2_-_73529725_73529736	0.642404	Gli3_Zic1	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr17_-_27204357_27204447	0.640771	Gli3_Zic1	ENSMUST00000055117.7|Lemd2|ENSMUSG00000044857.7|LEM domain containing 2
mm10_v2_chr6_+_149408973_149409038	0.631738	Gli3_Zic1	ENSMUST00000086829.4|Bicd1|ENSMUSG00000003452.9|bicaudal D homolog 1 (Drosophila) 	ENSMUST00000111513.2|Bicd1|ENSMUSG00000003452.9|bicaudal D homolog 1 (Drosophila)
mm10_v2_chr1_-_180483410_180483504	0.63034	Gli3_Zic1	ENSMUST00000136521.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene 	ENSMUST00000179826.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene
mm10_v2_chrX_+_119927196_119927225	0.627153	Gli3_Zic1	ENSMUST00000040961.2|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5 	ENSMUST00000113366.1|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5
mm10_v2_chr14_+_55561060_55561071	0.626919	Gli3_Zic1	ENSMUST00000117701.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr13_+_54575008_54575017	0.622967	Gli3_Zic1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr17_-_24209377_24209416	0.622464	Gli3_Zic1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr16_-_96082389_96082481	0.619769	Gli3_Zic1	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr6_+_48395586_48395646	0.615402	Gli3_Zic1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr12_+_59066908_59066931	0.610313	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr2_+_164879358_164879398	0.608155	Gli3_Zic1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr11_-_40755201_40755311	0.601344	Gli3_Zic1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr17_+_35135196_35135243	0.592161	Gli3_Zic1	ENSMUST00000172571.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173491.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr7_+_3390629_3390707	0.587797	Gli3_Zic1	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr7_-_19665005_19665030	0.58356	Gli3_Zic1	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr3_+_31149934_31149958	0.576258	Gli3_Zic1	ENSMUST00000046174.6|Cldn11|ENSMUSG00000037625.6|claudin 11
mm10_v2_chr13_+_109685994_109686156	0.57403	Gli3_Zic1	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chrX_+_74329058_74329076	0.56184	Gli3_Zic1	ENSMUST00000004326.3|Plxna3|ENSMUSG00000031398.7|plexin A3
mm10_v2_chr14_+_25607797_25607838	0.56073	Gli3_Zic1	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr16_-_91011029_91011069	0.55934	Gli3_Zic1	ENSMUST00000130813.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr5_-_125058367_125058411	0.557666	Gli3_Zic1	ENSMUST00000134404.1|Ncor2|ENSMUSG00000029478.10|nuclear receptor co-repressor 2
mm10_v2_chr9_-_44735189_44735213	0.53948	Gli3_Zic1	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr5_-_38561658_38561680	0.538468	Gli3_Zic1	ENSMUST00000005234.9|Wdr1|ENSMUSG00000005103.9|WD repeat domain 1
mm10_v2_chr5_+_30588078_30588171	0.534143	Gli3_Zic1	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr1_-_160077918_160077944	0.531545	Gli3_Zic1	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr5_-_5266038_5266292	0.531414	Gli3_Zic1	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr10_+_127165118_127165225	0.515351	Gli3_Zic1	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr16_-_20241304_20241363	0.515008	Gli3_Zic1	ENSMUST00000040880.7|Map6d1|ENSMUSG00000041205.7|MAP6 domain containing 1
mm10_v2_chr15_+_9071252_9071273	0.512253	Gli3_Zic1	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr19_-_41263931_41264008	0.507805	Gli3_Zic1	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr9_-_123678873_123678885	0.506	Gli3_Zic1	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr5_-_118244861_118245116	0.499374	Gli3_Zic1	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chrX_+_18162575_18162657	0.499263	Gli3_Zic1	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr7_-_142372210_142372292	0.489478	Gli3_Zic1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr14_-_56811464_56811464	0.480143	Gli3_Zic1	ENSMUST00000173954.1|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr17_+_35135174_35135181	0.475997	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr15_-_89379246_89379262	0.473341	Gli3_Zic1	ENSMUST00000049968.7|Odf3b|ENSMUSG00000047394.7|outer dense fiber of sperm tails 3B
mm10_v2_chr4_-_147848358_147848425	0.472311	Gli3_Zic1	ENSMUST00000105718.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933 	ENSMUST00000135798.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933
mm10_v2_chr9_+_80067452_80067493	0.461122	Gli3_Zic1	ENSMUST00000165607.2|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr15_-_53902472_53902530	0.454335	Gli3_Zic1	ENSMUST00000078673.6|Samd12|ENSMUSG00000058656.6|sterile alpha motif domain containing 12
mm10_v2_chrX_+_152144240_152144272	0.449555	Gli3_Zic1	ENSMUST00000168786.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112605.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112604.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2
mm10_v2_chr1_+_97770158_97770209	0.447888	Gli3_Zic1	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr1_-_168431896_168431905	0.446302	Gli3_Zic1	ENSMUST00000176540.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr9_-_44234014_44234046	0.435673	Gli3_Zic1	ENSMUST00000037644.6|Cbl|ENSMUSG00000034342.8|Casitas B-lineage lymphoma
mm10_v2_chr8_+_124897877_124897901	0.432423	Gli3_Zic1	ENSMUST00000034467.5|Sprtn|ENSMUSG00000031986.5|SprT-like N-terminal domain
mm10_v2_chr4_-_151108454_151108576	0.431714	Gli3_Zic1	ENSMUST00000105670.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr15_+_103503261_103503298	0.43085	Gli3_Zic1	ENSMUST00000023132.3|Pde1b|ENSMUSG00000022489.5|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm10_v2_chr12_+_32953874_32953891	0.428542	Gli3_Zic1	ENSMUST00000076698.5|Sypl|ENSMUSG00000020570.8|synaptophysin-like protein
mm10_v2_chr8_+_23139030_23139061	0.425204	Gli3_Zic1	ENSMUST00000121075.1|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr11_+_51289920_51290011	0.419725	Gli3_Zic1	ENSMUST00000102765.2|Col23a1|ENSMUSG00000063564.7|collagen, type XXIII, alpha 1
mm10_v2_chrX_-_150812715_150812805	0.40937	Gli3_Zic1	ENSMUST00000112697.3|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr10_+_26772477_26772515	0.409369	Gli3_Zic1	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr13_+_81783220_81783307	0.408228	Gli3_Zic1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr11_+_4135167_4135222	0.406745	Gli3_Zic1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr5_-_122264378_122264460	0.401887	Gli3_Zic1	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr6_-_35308110_35308136	0.399433	Gli3_Zic1	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chrX_+_155262443_155262481	0.395697	Gli3_Zic1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr18_-_35655185_35655199	0.395245	Gli3_Zic1	ENSMUST00000097619.1|Prob1|ENSMUSG00000073600.1|proline rich basic protein 1
mm10_v2_chr6_-_85502980_85503034	0.393299	Gli3_Zic1	ENSMUST00000159062.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chrX_-_147554050_147554087	0.391918	Gli3_Zic1	ENSMUST00000112819.2|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2 	ENSMUST00000136789.1|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2
mm10_v2_chr10_-_52382074_52382142	0.38915	Gli3_Zic1	ENSMUST00000020008.8|Gopc|ENSMUSG00000019861.8|golgi associated PDZ and coiled-coil motif containing 	ENSMUST00000105475.2|Gopc|ENSMUSG00000019861.8|golgi associated PDZ and coiled-coil motif containing
mm10_v2_chr6_-_85502858_85502965	0.384514	Gli3_Zic1	ENSMUST00000161546.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41 	ENSMUST00000161078.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr1_-_155099630_155099636	0.384214	Gli3_Zic1	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr7_+_12881165_12881204	0.381027	Gli3_Zic1	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr4_-_136956784_136956871	0.37926	Gli3_Zic1	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr17_+_15010266_15010266	0.375992	Gli3_Zic1	ENSMUST00000097395.3|Gm3435|ENSMUSG00000079709.2|predicted gene 3435
mm10_v2_chr5_+_138995038_138995066	0.365057	Gli3_Zic1	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr12_+_32378692_32378789	0.36124	Gli3_Zic1	ENSMUST00000172332.2|Ccdc71l|ENSMUSG00000090946.2|coiled-coil domain containing 71 like
mm10_v2_chr11_-_58330319_58330358	0.360867	Gli3_Zic1	ENSMUST00000065533.2|Gm9900|ENSMUSG00000053218.2|predicted gene 9900
mm10_v2_chr17_+_15041641_15041641	0.357184	Gli3_Zic1	ENSMUST00000097393.3|Ermard|ENSMUSG00000036552.10|ER membrane associated RNA degradation
mm10_v2_chr11_+_73018986_73019047	0.353163	Gli3_Zic1	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm10_v2_chr6_+_125009232_125009253	0.352892	Gli3_Zic1	ENSMUST00000112428.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr2_+_49451486_49451559	0.350973	Gli3_Zic1	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr5_+_137778849_137778935	0.349899	Gli3_Zic1	ENSMUST00000126126.1|Ppp1r35|ENSMUSG00000029725.4|protein phosphatase 1, regulatory subunit 35 	ENSMUST00000031739.4|Ppp1r35|ENSMUSG00000029725.4|protein phosphatase 1, regulatory subunit 35
mm10_v2_chr12_+_3365108_3365142	0.349376	Gli3_Zic1	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr5_+_3803160_3803193	0.348121	Gli3_Zic1	ENSMUST00000171023.1|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing 	ENSMUST00000080085.4|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing
mm10_v2_chr7_-_13034722_13034782	0.346718	Gli3_Zic1	ENSMUST00000005711.4|Chmp2a|ENSMUSG00000033916.4|charged multivesicular body protein 2A
mm10_v2_chrX_-_59568068_59568094	0.345274	Gli3_Zic1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr9_-_44881274_44881323	0.343456	Gli3_Zic1	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr7_+_130865835_130865942	0.321585	Gli3_Zic1	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr9_+_80066895_80066936	0.320014	Gli3_Zic1	ENSMUST00000037484.8|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6 	ENSMUST00000176640.1|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr11_-_116654245_116654325	0.319781	Gli3_Zic1	ENSMUST00000021166.5|Cygb|ENSMUSG00000020810.5|cytoglobin
mm10_v2_chr11_-_86544754_86544805	0.319457	Gli3_Zic1	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr17_+_35135463_35135539	0.307013	Gli3_Zic1	ENSMUST00000173535.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173952.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chrX_-_73966329_73966376	0.305634	Gli3_Zic1	ENSMUST00000114372.2|Hcfc1|ENSMUSG00000031386.8|host cell factor C1 	ENSMUST00000033761.6|Hcfc1|ENSMUSG00000031386.8|host cell factor C1
mm10_v2_chr7_-_111779963_111779993	0.305448	Gli3_Zic1	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr15_+_75969123_75969189	0.297248	Gli3_Zic1	ENSMUST00000109966.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707 	ENSMUST00000109967.3|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr10_-_120979327_120979373	0.294617	Gli3_Zic1	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr7_+_130865756_130865812	0.291505	Gli3_Zic1	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr6_+_125009261_125009317	0.28523	Gli3_Zic1	ENSMUST00000112427.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr1_-_56972437_56972502	0.277744	Gli3_Zic1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr4_+_74251928_74251990	0.276746	Gli3_Zic1	ENSMUST00000030102.5|Kdm4c|ENSMUSG00000028397.7|lysine (K)-specific demethylase 4C
mm10_v2_chr15_+_75969287_75969312	0.276649	Gli3_Zic1	ENSMUST00000147641.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr14_+_51984857_51984971	0.274525	Gli3_Zic1	ENSMUST00000100639.4|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182909.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182760.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182061.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182193.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40
mm10_v2_chr3_+_88142328_88142483	0.272374	Gli3_Zic1	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr2_-_113848601_113848615	0.271058	Gli3_Zic1	ENSMUST00000110949.2|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr3_+_88142536_88142572	0.26592	Gli3_Zic1	ENSMUST00000107558.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000107559.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr11_-_118248507_118248571	0.264077	Gli3_Zic1	ENSMUST00000017276.7|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr10_+_128706251_128706264	0.257579	Gli3_Zic1	ENSMUST00000054125.8|Pmel|ENSMUSG00000025359.9|premelanosome protein
mm10_v2_chr12_-_32953772_32953846	0.25732	Gli3_Zic1	ENSMUST00000180391.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene 	ENSMUST00000181670.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene
mm10_v2_chr4_-_128962420_128962449	0.257167	Gli3_Zic1	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr6_+_17463749_17463809	0.248529	Gli3_Zic1	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr2_-_36104060_36104073	0.244808	Gli3_Zic1	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr11_-_98149551_98149621	0.241994	Gli3_Zic1	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr5_-_147725988_147726023	0.241421	Gli3_Zic1	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr2_+_181520485_181520531	0.240379	Gli3_Zic1	ENSMUST00000072334.5|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr5_-_117319242_117319242	0.234029	Gli3_Zic1	ENSMUST00000100834.1|Gm10399|ENSMUSG00000072688.1|predicted gene 10399
mm10_v2_chr1_-_52232296_52232432	0.230843	Gli3_Zic1	ENSMUST00000114512.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr6_+_125009113_125009179	0.223375	Gli3_Zic1	ENSMUST00000054553.4|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr2_-_59948155_59948216	0.220679	Gli3_Zic1	ENSMUST00000153136.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr11_-_109363654_109363654	0.219234	Gli3_Zic1	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr17_-_34028044_34028076	0.21546	Gli3_Zic1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chr3_-_89245005_89245031	0.212222	Gli3_Zic1	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr13_-_49320219_49320311	0.208631	Gli3_Zic1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chrX_-_137038265_137038309	0.208176	Gli3_Zic1	ENSMUST00000113070.2|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000113069.2|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53
mm10_v2_chrX_-_150812932_150813154	0.20623	Gli3_Zic1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr13_-_29984219_29984353	0.204399	Gli3_Zic1	ENSMUST00000146092.1|E2f3|ENSMUSG00000016477.11|E2F transcription factor 3
mm10_v2_chr6_-_142702259_142702290	0.204321	Gli3_Zic1	ENSMUST00000073173.5|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000111771.1|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000087527.4|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000100827.2|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm10_v2_chr9_-_123678782_123678850	0.203338	Gli3_Zic1	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr3_+_97158767_97158820	0.202671	Gli3_Zic1	ENSMUST00000090759.4|Acp6|ENSMUSG00000028093.9|acid phosphatase 6, lysophosphatidic
mm10_v2_chr15_-_95528702_95528777	0.202594	Gli3_Zic1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr11_-_58801944_58801968	0.201766	Gli3_Zic1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr5_-_32746272_32746313	0.197476	Gli3_Zic1	ENSMUST00000120591.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr11_-_118248590_118248607	0.197303	Gli3_Zic1	ENSMUST00000106305.2|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr11_+_85311232_85311286	0.192784	Gli3_Zic1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr17_-_56874421_56874460	0.186936	Gli3_Zic1	ENSMUST00000043062.4|Acsbg2|ENSMUSG00000024207.8|acyl-CoA synthetase bubblegum family member 2
mm10_v2_chr4_+_12089373_12089441	0.185409	Gli3_Zic1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr16_-_85173692_85173718	0.182473	Gli3_Zic1	ENSMUST00000005406.10|App|ENSMUSG00000022892.10|amyloid beta (A4) precursor protein
mm10_v2_chr11_+_77763246_77763339	0.18171	Gli3_Zic1	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr6_-_56362356_56362519	0.18084	Gli3_Zic1	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr4_+_12140263_12140317	0.179656	Gli3_Zic1	ENSMUST00000050069.2|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1 	ENSMUST00000069128.7|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1
mm10_v2_chr7_+_65693447_65693477	0.175134	Gli3_Zic1	ENSMUST00000143508.1|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr17_+_27655572_27655622	0.165206	Gli3_Zic1	ENSMUST00000045896.3|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr1_-_168431695_168431750	0.165021	Gli3_Zic1	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr19_+_5038826_5038938	0.164608	Gli3_Zic1	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr8_+_84415348_84415392	0.164316	Gli3_Zic1	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr4_+_141213948_141213998	0.163538	Gli3_Zic1	ENSMUST00000097813.2|Rsg1|ENSMUSG00000073733.4|REM2 and RAB-like small GTPase 1
mm10_v2_chr2_+_181520533_181520563	0.154135	Gli3_Zic1	ENSMUST00000108797.1|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr9_+_21592722_21592722	0.152493	Gli3_Zic1	ENSMUST00000062125.10|1810026J23Rik|ENSMUSG00000048429.10|RIKEN cDNA 1810026J23 gene
mm10_v2_chr12_+_24498570_24498587	0.15196	Gli3_Zic1	ENSMUST00000075954.7|Taf1b|ENSMUSG00000059669.7|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm10_v2_chr17_+_56326045_56326097	0.145531	Gli3_Zic1	ENSMUST00000139679.1|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000025036.4|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000086835.5|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B
mm10_v2_chr11_-_42000532_42000592	0.145316	Gli3_Zic1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr8_-_124897685_124897757	0.14524	Gli3_Zic1	ENSMUST00000098312.2|Exoc8|ENSMUSG00000074030.2|exocyst complex component 8
mm10_v2_chr1_+_128103297_128103311	0.141433	Gli3_Zic1	ENSMUST00000036288.4|R3hdm1|ENSMUSG00000056211.7|R3H domain containing 1
mm10_v2_chr4_-_133672601_133672652	0.137402	Gli3_Zic1	ENSMUST00000062118.4|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V 	ENSMUST00000067902.6|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V
mm10_v2_chr8_+_4243264_4243387	0.118744	Gli3_Zic1	ENSMUST00000110996.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chrX_-_59567348_59567472	0.117677	Gli3_Zic1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr8_+_46492789_46492832	0.115393	Gli3_Zic1	ENSMUST00000110371.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr17_+_27655643_27655659	0.10944	Gli3_Zic1	ENSMUST00000114872.1|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr9_-_114026711_114026764	0.108338	Gli3_Zic1	ENSMUST00000117537.1|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2 	ENSMUST00000035090.7|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2
mm10_v2_chr17_+_35220834_35220834	0.108115	Gli3_Zic1	ENSMUST00000118793.1|Gm16181|ENSMUSG00000081650.1|predicted gene 16181
mm10_v2_chr9_+_118506226_118506318	0.105399	Gli3_Zic1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr13_-_63431737_63431755	0.103489	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr3_-_101110278_101110294	0.098286	Gli3_Zic1	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr12_-_101083653_101083717	0.0970063	Gli3_Zic1	ENSMUST00000048305.8|Smek1|ENSMUSG00000041846.8|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENSMUST00000163095.1|Smek1|ENSMUSG00000041846.8|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
mm10_v2_chrX_+_137049586_137049654	0.0921678	Gli3_Zic1	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr13_-_67526136_67526179	0.089001	Gli3_Zic1	ENSMUST00000181341.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87 	ENSMUST00000181767.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87 	ENSMUST00000181573.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87
mm10_v2_chr8_+_23139064_23139105	0.0862482	Gli3_Zic1	ENSMUST00000033947.8|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr4_+_42949814_42949923	0.0832415	Gli3_Zic1	ENSMUST00000037872.3|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENSMUST00000098112.2|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr15_+_25984359_25984373	0.0816685	Gli3_Zic1	ENSMUST00000061875.6|Zfp622|ENSMUSG00000052253.5|zinc finger protein 622
mm10_v2_chr19_-_6084679_6084693	0.0767938	Gli3_Zic1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr5_+_115506668_115506808	0.0746032	Gli3_Zic1	ENSMUST00000067268.8|Pxn|ENSMUSG00000029528.11|paxillin 	ENSMUST00000086523.3|Pxn|ENSMUSG00000029528.11|paxillin
mm10_v2_chr5_+_92137896_92137939	0.0707472	Gli3_Zic1	ENSMUST00000031355.6|Uso1|ENSMUSG00000029407.7|USO1 vesicle docking factor
mm10_v2_chr5_-_138155694_138155744	0.0664136	Gli3_Zic1	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr2_-_113848655_113848744	0.0633105	Gli3_Zic1	ENSMUST00000102545.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A 	ENSMUST00000110948.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr15_+_59315030_59315087	0.0562759	Gli3_Zic1	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr10_-_128804353_128804374	0.0528485	Gli3_Zic1	ENSMUST00000051011.7|Tmem198b|ENSMUSG00000047090.7|transmembrane protein 198b
mm10_v2_chr11_-_102556122_102556199	0.0465919	Gli3_Zic1	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chrX_-_74393003_74393072	0.0390614	Gli3_Zic1	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr17_+_34187545_34187571	0.0353486	Gli3_Zic1	ENSMUST00000170086.1|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr9_-_45906369_45906437	0.0314728	Gli3_Zic1	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr19_+_55316313_55316367	0.0300083	Gli3_Zic1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr8_-_105295934_105296098	0.0241771	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr12_+_76370266_76370266	0.0203653	Gli3_Zic1	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr7_-_142657466_142657496	0.017614	Gli3_Zic1	ENSMUST00000097936.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2 	ENSMUST00000000033.5|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr3_-_45378206_45378260	0.0170935	Gli3_Zic1	ENSMUST00000181047.1|2610316D01Rik|ENSMUSG00000097040.1|RIKEN cDNA 2610316D01 gene
mm10_v2_chr5_+_144768536_144768552	0.0165026	Gli3_Zic1	ENSMUST00000128550.1|Trrap|ENSMUSG00000045482.9|transformation/transcription domain-associated protein
mm10_v2_chr12_-_93929102_93929102	0.0112491	Gli3_Zic1	ENSMUST00000180321.1|Gm9726|ENSMUSG00000094935.1|predicted gene 9726
mm10_v2_chr6_+_17463927_17464071	0.0107868	Gli3_Zic1	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr17_-_56609689_56609771	0.00971898	Gli3_Zic1	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr10_+_69533803_69533848	0.00730793	Gli3_Zic1	ENSMUST00000182155.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183169.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183148.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr17_-_15041457_15041559	0.00658985	Gli3_Zic1	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr10_+_69534208_69534222	0.0063296	Gli3_Zic1	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_+_69533761_69533776	0.00551934	Gli3_Zic1	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_-_129742275_129742312	0.00287247	Gli3_Zic1	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr17_-_24650270_24650311	0.00287176	Gli3_Zic1	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr7_-_6331235_6331290	0.00270602	Gli3_Zic1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
