mm10_v2_chr9_+_15239045_15239155	4.23937	Hoxa1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr14_+_70077375_70077445	3.59033	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr14_-_103844173_103844198	2.92848	Hoxa1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr4_-_143299498_143299564	2.90256	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr2_+_152962485_152962510	2.35314	Hoxa1	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr8_-_11312731_11312826	2.17291	Hoxa1	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr10_+_79988584_79988683	2.15154	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr4_-_106799779_106799846	2.08254	Hoxa1	ENSMUST00000145061.1|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11 	ENSMUST00000102762.3|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11
mm10_v2_chr8_-_117673682_117673701	2.08086	Hoxa1	ENSMUST00000173522.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1 	ENSMUST00000174450.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1
mm10_v2_chr2_+_163225363_163225469	1.95345	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chr13_-_12340723_12340760	1.8248	Hoxa1	ENSMUST00000168193.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000110616.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000064204.7|Actn2|ENSMUSG00000052374.8|actinin alpha 2
mm10_v2_chr10_+_94576254_94576270	1.77146	Hoxa1	ENSMUST00000117929.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr16_+_38902305_38902316	1.65156	Hoxa1	ENSMUST00000023478.7|Igsf11|ENSMUSG00000022790.7|immunoglobulin superfamily, member 11
mm10_v2_chr17_+_70522083_70522145	1.62412	Hoxa1	ENSMUST00000148486.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1 	ENSMUST00000133717.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr6_-_52012476_52012551	1.61462	Hoxa1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr11_-_20332654_20332688	1.41555	Hoxa1	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr17_+_70522149_70522169	1.29608	Hoxa1	ENSMUST00000140728.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr4_-_143299463_143299482	1.24026	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr2_-_152951688_152951700	1.19546	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr15_+_74516196_74516219	1.15814	Hoxa1	ENSMUST00000042035.9|Bai1|ENSMUSG00000034730.10|brain-specific angiogenesis inhibitor 1
mm10_v2_chrX_+_110814390_110814413	1.14223	Hoxa1	ENSMUST00000078229.3|Pou3f4|ENSMUSG00000056854.3|POU domain, class 3, transcription factor 4
mm10_v2_chr13_+_72628802_72628825	1.13198	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr13_+_31806627_31806650	1.08671	Hoxa1	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr7_+_73391160_73391296	1.0581	Hoxa1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr1_-_45503282_45503282	1.01515	Hoxa1	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr14_+_56575603_56575633	0.99505	Hoxa1	ENSMUST00000161553.1|Parp4|ENSMUSG00000054509.7|poly (ADP-ribose) polymerase family, member 4
mm10_v2_chr6_-_21851914_21852183	0.908984	Hoxa1	ENSMUST00000134635.1|Tspan12|ENSMUSG00000029669.8|tetraspanin 12 	ENSMUST00000123116.1|Tspan12|ENSMUSG00000029669.8|tetraspanin 12 	ENSMUST00000120965.1|Tspan12|ENSMUSG00000029669.8|tetraspanin 12
mm10_v2_chr10_+_75037291_75037332	0.907543	Hoxa1	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr3_+_68572245_68572392	0.864531	Hoxa1	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr1_-_119053339_119053370	0.848945	Hoxa1	ENSMUST00000161301.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2 	ENSMUST00000161451.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2 	ENSMUST00000162607.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr14_-_69503316_69503362	0.825112	Hoxa1	ENSMUST00000179116.2|Gm21464|ENSMUSG00000093954.2|predicted gene, 21464
mm10_v2_chr5_+_27261916_27261980	0.803274	Hoxa1	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr3_-_88762244_88762384	0.772021	Hoxa1	ENSMUST00000183267.1|Syt11|ENSMUSG00000068923.8|synaptotagmin XI
mm10_v2_chr9_-_21312255_21312333	0.768959	Hoxa1	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chrX_+_56454871_56454887	0.75237	Hoxa1	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr10_+_81628702_81628719	0.728369	Hoxa1	ENSMUST00000129622.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr18_-_56562215_56562254	0.687383	Hoxa1	ENSMUST00000170309.1|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1
mm10_v2_chr18_+_4994600_4994623	0.685686	Hoxa1	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr15_-_53346118_53346169	0.680507	Hoxa1	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr18_-_56562187_56562209	0.671886	Hoxa1	ENSMUST00000171844.2|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1
mm10_v2_chr12_+_53248677_53248677	0.666726	Hoxa1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr6_-_136875794_136875811	0.643082	Hoxa1	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr18_-_56562261_56562328	0.541949	Hoxa1	ENSMUST00000066208.6|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1 	ENSMUST00000172734.1|Aldh7a1|ENSMUSG00000053644.7|aldehyde dehydrogenase family 7, member A1
mm10_v2_chr15_+_9140527_9140621	0.525605	Hoxa1	ENSMUST00000090380.4|Lmbrd2|ENSMUSG00000039704.6|LMBR1 domain containing 2
mm10_v2_chr13_+_72628831_72628971	0.513812	Hoxa1	ENSMUST00000169028.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr11_+_103774150_103774193	0.491538	Hoxa1	ENSMUST00000000127.5|Wnt3|ENSMUSG00000000125.5|wingless-related MMTV integration site 3
mm10_v2_chr9_-_4796218_4796267	0.477912	Hoxa1	ENSMUST00000027020.6|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000063508.7|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000163309.1|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm10_v2_chr10_-_78352469_78352515	0.459997	Hoxa1	ENSMUST00000138035.1|Agpat3|ENSMUSG00000001211.8|1-acylglycerol-3-phosphate O-acyltransferase 3
mm10_v2_chr3_-_110143937_110144011	0.455599	Hoxa1	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr11_-_116189542_116189575	0.449396	Hoxa1	ENSMUST00000148601.1|Acox1|ENSMUSG00000020777.10|acyl-Coenzyme A oxidase 1, palmitoyl
mm10_v2_chr18_-_13972617_13972733	0.442892	Hoxa1	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr3_+_114030532_114030571	0.442696	Hoxa1	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr2_+_158375638_158375721	0.436074	Hoxa1	ENSMUST00000109488.1|Snhg11|ENSMUSG00000044349.9|small nucleolar RNA host gene 11
mm10_v2_chr3_+_98013503_98013547	0.386956	Hoxa1	ENSMUST00000079812.6|Notch2|ENSMUSG00000027878.10|notch 2
mm10_v2_chr10_+_67185730_67185768	0.364588	Hoxa1	ENSMUST00000173689.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr9_+_14276301_14276347	0.361667	Hoxa1	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr14_-_69284982_69285112	0.357037	Hoxa1	ENSMUST00000183882.1|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37 	ENSMUST00000037064.4|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37
mm10_v2_chr4_-_108406676_108406745	0.356756	Hoxa1	ENSMUST00000184609.1|Gpx7|ENSMUSG00000028597.11|glutathione peroxidase 7
mm10_v2_chr5_-_137684665_137684729	0.339099	Hoxa1	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr9_-_101034857_101034877	0.338714	Hoxa1	ENSMUST00000142676.1|Pccb|ENSMUSG00000032527.7|propionyl Coenzyme A carboxylase, beta polypeptide 	ENSMUST00000149322.1|Pccb|ENSMUSG00000032527.7|propionyl Coenzyme A carboxylase, beta polypeptide
mm10_v2_chr9_+_110344185_110344204	0.300183	Hoxa1	ENSMUST00000142100.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr1_+_89454769_89454885	0.292445	Hoxa1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr15_-_95528702_95528777	0.282553	Hoxa1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr11_-_40755201_40755311	0.276615	Hoxa1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr9_+_58129321_58129349	0.272382	Hoxa1	ENSMUST00000034880.3|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr5_-_143732273_143732316	0.258261	Hoxa1	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr9_+_58129062_58129088	0.239944	Hoxa1	ENSMUST00000085677.2|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr1_+_10993452_10993478	0.23855	Hoxa1	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr6_+_48395652_48395688	0.230928	Hoxa1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr1_-_157412576_157412621	0.225825	Hoxa1	ENSMUST00000078308.6|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2 	ENSMUST00000139470.1|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2
mm10_v2_chrX_-_150812932_150813154	0.207714	Hoxa1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr9_+_65890237_65890343	0.206876	Hoxa1	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr16_+_18877037_18877241	0.189489	Hoxa1	ENSMUST00000120532.1|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae) 	ENSMUST00000004222.7|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm10_v2_chr17_-_25081138_25081201	0.169334	Hoxa1	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr17_+_55445375_55445389	0.153174	Hoxa1	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr9_+_113930934_113930987	0.11545	Hoxa1	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr4_+_119814495_119814526	0.110899	Hoxa1	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr6_+_48395586_48395646	0.106209	Hoxa1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chrX_-_150813637_150813712	0.0851634	Hoxa1	ENSMUST00000112700.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr18_+_40258361_40258361	0.0721724	Hoxa1	ENSMUST00000091927.4|Kctd16|ENSMUSG00000051401.6|potassium channel tetramerisation domain containing 16
mm10_v2_chr4_+_138775735_138775784	0.0633466	Hoxa1	ENSMUST00000030528.2|Pla2g2d|ENSMUSG00000041202.6|phospholipase A2, group IID
mm10_v2_chr5_+_137030275_137030295	0.0605767	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr3_+_58525821_58525821	0.0546262	Hoxa1	ENSMUST00000029387.8|Eif2a|ENSMUSG00000027810.8|eukaryotic translation initiation factor 2A
mm10_v2_chr2_+_36230426_36230491	0.0495127	Hoxa1	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr9_+_58129476_58129501	0.0410901	Hoxa1	ENSMUST00000133287.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr16_-_18876522_18876570	0.0377534	Hoxa1	ENSMUST00000119273.1|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr11_-_102296618_102296681	0.0242324	Hoxa1	ENSMUST00000107132.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3 	ENSMUST00000073234.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3
mm10_v2_chr7_-_127708886_127708933	0.0142336	Hoxa1	ENSMUST00000061468.8|Bcl7c|ENSMUSG00000030814.11|B cell CLL/lymphoma 7C
mm10_v2_chr11_+_62281457_62281495	0.0111998	Hoxa1	ENSMUST00000101075.4|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19 	ENSMUST00000050646.6|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19
mm10_v2_chr2_-_148045891_148045948	0.00993849	Hoxa1	ENSMUST00000109964.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2
