mm10_v2_chr3_+_102010138_102010171	3.37959	Hoxa10	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr8_+_106935720_106935776	2.34828	Hoxa10	ENSMUST00000047425.3|Sntb2|ENSMUSG00000041308.5|syntrophin, basic 2
mm10_v2_chr5_-_131616599_131616611	2.13897	Hoxa10	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr3_+_67892189_67892226	2.08784	Hoxa10	ENSMUST00000063263.3|Iqcj|ENSMUSG00000051777.4|IQ motif containing J
mm10_v2_chr17_+_29093763_29093781	1.95895	Hoxa10	ENSMUST00000023829.6|Cdkn1a|ENSMUSG00000023067.7|cyclin-dependent kinase inhibitor 1A (P21)
mm10_v2_chr11_+_44617310_44617336	1.95748	Hoxa10	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr8_-_33747724_33747781	1.7674	Hoxa10	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr19_+_4711153_4711258	1.6803	Hoxa10	ENSMUST00000008991.6|Sptbn2|ENSMUSG00000067889.4|spectrin beta, non-erythrocytic 2
mm10_v2_chr13_-_99516537_99516602	1.64379	Hoxa10	ENSMUST00000064762.4|Map1b|ENSMUSG00000052727.5|microtubule-associated protein 1B
mm10_v2_chr10_+_97565436_97565546	1.56184	Hoxa10	ENSMUST00000038160.4|Lum|ENSMUSG00000036446.4|lumican
mm10_v2_chr6_-_3494587_3494598	1.3611	Hoxa10	ENSMUST00000049985.8|Hepacam2|ENSMUSG00000044156.8|HEPACAM family member 2
mm10_v2_chr11_-_42000284_42000356	1.30357	Hoxa10	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr11_-_69822144_69822180	1.30177	Hoxa10	ENSMUST00000045771.6|Spem1|ENSMUSG00000041165.6|sperm maturation 1
mm10_v2_chr6_+_54264839_54264863	1.22891	Hoxa10	ENSMUST00000146114.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr3_-_123672321_123672400	1.22065	Hoxa10	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr4_+_100776664_100776692	1.14329	Hoxa10	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr2_-_37647199_37647285	1.13575	Hoxa10	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr8_+_58912257_58912257	1.07698	Hoxa10	ENSMUST00000160055.1|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr9_+_62342449_62342473	1.06387	Hoxa10	ENSMUST00000156461.1|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr4_+_43406435_43406615	1.04853	Hoxa10	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr9_-_119825456_119825456	1.04651	Hoxa10	ENSMUST00000070617.7|Scn11a|ENSMUSG00000034115.9|sodium channel, voltage-gated, type XI, alpha
mm10_v2_chr2_-_79908428_79908438	1.03581	Hoxa10	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr6_-_99028874_99028942	1.0285	Hoxa10	ENSMUST00000154163.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr6_-_99044414_99044459	1.02082	Hoxa10	ENSMUST00000177507.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000123992.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr5_-_123666682_123666695	1.01039	Hoxa10	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr7_-_25882407_25882407	0.984447	Hoxa10	ENSMUST00000163316.2|Gm6434|ENSMUSG00000091233.2|predicted gene 6434
mm10_v2_chr3_+_60877002_60877017	0.960992	Hoxa10	ENSMUST00000099086.2|Gm8325|ENSMUSG00000027694.7|predicted pseudogene 8325
mm10_v2_chr9_-_112232449_112232501	0.907652	Hoxa10	ENSMUST00000035085.5|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr10_+_5593718_5593739	0.882796	Hoxa10	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr6_+_34354119_34354151	0.871488	Hoxa10	ENSMUST00000038406.6|Akr1b8|ENSMUSG00000029762.6|aldo-keto reductase family 1, member B8
mm10_v2_chr11_-_83645621_83645621	0.842314	Hoxa10	ENSMUST00000182502.1|Rpl9-ps1|ENSMUSG00000081906.2|ribosomal protein L9, pseudogene 1
mm10_v2_chr9_+_108560422_108560534	0.827804	Hoxa10	ENSMUST00000081111.8|Impdh2|ENSMUSG00000062867.8|inosine 5'-phosphate dehydrogenase 2
mm10_v2_chr9_-_46319984_46319990	0.811068	Hoxa10	ENSMUST00000159565.1|4931429L15Rik|ENSMUSG00000056617.6|RIKEN cDNA 4931429L15 gene
mm10_v2_chr10_-_128180265_128180307	0.797886	Hoxa10	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr18_+_33464163_33464163	0.793119	Hoxa10	ENSMUST00000097634.3|Gm10549|ENSMUSG00000073610.3|predicted gene 10549
mm10_v2_chr9_+_53771499_53771535	0.779011	Hoxa10	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr10_-_29144194_29144194	0.748925	Hoxa10	ENSMUST00000070359.2|Gm9996|ENSMUSG00000056316.2|predicted gene 9996
mm10_v2_chr5_-_103100054_103100088	0.748707	Hoxa10	ENSMUST00000112848.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr19_+_43440404_43440447	0.747365	Hoxa10	ENSMUST00000165311.1|Cnnm1|ENSMUSG00000025189.8|cyclin M1
mm10_v2_chr2_-_79908389_79908403	0.742101	Hoxa10	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr13_+_24614608_24614634	0.739787	Hoxa10	ENSMUST00000091694.3|Fam65b|ENSMUSG00000036006.13|family with sequence similarity 65, member B
mm10_v2_chr8_+_12984246_12984330	0.716879	Hoxa10	ENSMUST00000110873.3|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like 	ENSMUST00000173006.1|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like 	ENSMUST00000145067.1|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr13_-_41847482_41847490	0.706906	Hoxa10	ENSMUST00000072012.3|Adtrp|ENSMUSG00000058022.7|androgen dependent TFPI regulating protein
mm10_v2_chr1_+_66321708_66321719	0.699652	Hoxa10	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr9_-_50739365_50739517	0.685737	Hoxa10	ENSMUST00000117093.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000121634.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr1_+_74713551_74713574	0.657242	Hoxa10	ENSMUST00000027356.5|Cyp27a1|ENSMUSG00000026170.5|cytochrome P450, family 27, subfamily a, polypeptide 1
mm10_v2_chrX_+_112615301_112615301	0.652583	Hoxa10	ENSMUST00000122805.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr2_-_149798701_149798743	0.650811	Hoxa10	ENSMUST00000148202.1|Gm14133|ENSMUSG00000087029.1|predicted gene 14133 	ENSMUST00000139471.1|Gm14133|ENSMUSG00000087029.1|predicted gene 14133
mm10_v2_chrX_-_43274786_43274786	0.629397	Hoxa10	ENSMUST00000016294.7|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1
mm10_v2_chr9_+_54538984_54538993	0.627131	Hoxa10	ENSMUST00000060242.5|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7 	ENSMUST00000118413.1|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7
mm10_v2_chr3_+_85915722_85915722	0.615837	Hoxa10	ENSMUST00000054148.7|Gm9790|ENSMUSG00000044330.7|predicted gene 9790
mm10_v2_chr17_+_36958623_36958641	0.615263	Hoxa10	ENSMUST00000173814.1|Znrd1as|ENSMUSG00000036214.7|Znrd1 antisense
mm10_v2_chr17_+_36958571_36958611	0.610286	Hoxa10	ENSMUST00000040177.6|Znrd1as|ENSMUSG00000036214.7|Znrd1 antisense
mm10_v2_chr4_-_91376433_91376477	0.609138	Hoxa10	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr2_-_73625731_73625744	0.59837	Hoxa10	ENSMUST00000070579.6|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr19_+_24875679_24875689	0.59438	Hoxa10	ENSMUST00000073080.5|Gm10053|ENSMUSG00000058927.5|predicted gene 10053
mm10_v2_chr1_-_156939626_156939657	0.590601	Hoxa10	ENSMUST00000063199.6|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2 	ENSMUST00000027886.7|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2 	ENSMUST00000172057.1|Ralgps2|ENSMUSG00000026594.8|Ral GEF with PH domain and SH3 binding motif 2
mm10_v2_chr13_-_18031616_18031629	0.589242	Hoxa10	ENSMUST00000099736.2|Vdac3-ps1|ENSMUSG00000075053.2|voltage-dependent anion channel 3, pseudogene 1
mm10_v2_chr5_-_118244861_118245116	0.577015	Hoxa10	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr10_-_127030789_127030812	0.574228	Hoxa10	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chrX_+_112604274_112604274	0.57278	Hoxa10	ENSMUST00000071814.6|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr8_+_110618577_110618638	0.556288	Hoxa10	ENSMUST00000034190.9|Vac14|ENSMUSG00000010936.10|Vac14 homolog (S. cerevisiae)
mm10_v2_chr3_+_136670076_136670186	0.549873	Hoxa10	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chrX_-_136741155_136741352	0.534951	Hoxa10	ENSMUST00000166930.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113095.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000155207.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000080411.6|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000169418.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr18_+_60774675_60774686	0.52332	Hoxa10	ENSMUST00000118551.1|Rps14|ENSMUSG00000024608.4|ribosomal protein S14
mm10_v2_chr5_+_64160207_64160220	0.512044	Hoxa10	ENSMUST00000101195.2|Tbc1d1|ENSMUSG00000029174.12|TBC1 domain family, member 1
mm10_v2_chr4_+_42629719_42629719	0.511912	Hoxa10	ENSMUST00000166898.2|Gm2564|ENSMUSG00000091938.2|predicted gene 2564
mm10_v2_chr8_+_83666827_83666882	0.499158	Hoxa10	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr13_+_23581563_23581598	0.495884	Hoxa10	ENSMUST00000102968.1|Hist1h4d|ENSMUSG00000061482.6|histone cluster 1, H4d
mm10_v2_chr8_+_71597648_71597675	0.471292	Hoxa10	ENSMUST00000143662.1|Fam129c|ENSMUSG00000043243.9|family with sequence similarity 129, member C
mm10_v2_chr5_+_34989473_34989549	0.471124	Hoxa10	ENSMUST00000114284.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12 	ENSMUST00000114285.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr2_+_4300462_4300522	0.463342	Hoxa10	ENSMUST00000175669.1|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr6_-_56901870_56901891	0.462064	Hoxa10	ENSMUST00000101367.2|Nt5c3|ENSMUSG00000029780.8|5'-nucleotidase, cytosolic III
mm10_v2_chr11_+_87109221_87109239	0.453841	Hoxa10	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr14_-_89898466_89898466	0.45362	Hoxa10	ENSMUST00000081204.4|Gm10110|ENSMUSG00000062093.4|predicted gene 10110
mm10_v2_chr2_-_51149100_51149115	0.449693	Hoxa10	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr17_-_15566421_15566421	0.449583	Hoxa10	ENSMUST00000178455.1|Gm6686|ENSMUSG00000095920.1|predicted pseudogene 6686
mm10_v2_chr9_-_100506844_100506856	0.448045	Hoxa10	ENSMUST00000112874.3|Nck1|ENSMUSG00000032475.9|non-catalytic region of tyrosine kinase adaptor protein 1
mm10_v2_chr10_-_29362012_29362029	0.447456	Hoxa10	ENSMUST00000161508.1|Rnf146|ENSMUSG00000038876.5|ring finger protein 146
mm10_v2_chr15_+_27025386_27025386	0.445604	Hoxa10	ENSMUST00000169678.2|Gm6576|ENSMUSG00000090544.2|predicted gene 6576
mm10_v2_chr5_+_121749196_121749196	0.431302	Hoxa10	ENSMUST00000161064.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr2_+_68117713_68117713	0.427557	Hoxa10	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr5_+_121802230_121802230	0.4213	Hoxa10	ENSMUST00000162995.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr7_-_144470714_144470770	0.420792	Hoxa10	ENSMUST00000033407.6|Cttn|ENSMUSG00000031078.9|cortactin
mm10_v2_chr14_+_54686171_54686230	0.413905	Hoxa10	ENSMUST00000038539.6|1700123O20Rik|ENSMUSG00000040822.6|RIKEN cDNA 1700123O20 gene
mm10_v2_chr13_+_44840686_44840697	0.412121	Hoxa10	ENSMUST00000173906.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr9_-_96478660_96478675	0.406937	Hoxa10	ENSMUST00000057500.4|Rnf7|ENSMUSG00000051234.5|ring finger protein 7
mm10_v2_chr15_+_59374198_59374279	0.40451	Hoxa10	ENSMUST00000079703.3|Nsmce2|ENSMUSG00000059586.3|non-SMC element 2 homolog (MMS21, S. cerevisiae) 	ENSMUST00000168722.1|Nsmce2|ENSMUSG00000059586.3|non-SMC element 2 homolog (MMS21, S. cerevisiae)
mm10_v2_chr11_-_78984946_78984957	0.400327	Hoxa10	ENSMUST00000108268.3|Lgals9|ENSMUSG00000001123.9|lectin, galactose binding, soluble 9
mm10_v2_chr10_-_111997204_111997279	0.382281	Hoxa10	ENSMUST00000074805.5|Glipr1|ENSMUSG00000056888.5|GLI pathogenesis-related 1 (glioma)
mm10_v2_chr12_-_69198419_69198429	0.379276	Hoxa10	ENSMUST00000021356.5|Dnaaf2|ENSMUSG00000020973.7|dynein, axonemal assembly factor 2
mm10_v2_chr16_+_48872608_48872626	0.375731	Hoxa10	ENSMUST00000065666.4|Retnlg|ENSMUSG00000022651.5|resistin like gamma
mm10_v2_chr7_+_29238434_29238456	0.361683	Hoxa10	ENSMUST00000108237.1|Yif1b|ENSMUSG00000030588.5|Yip1 interacting factor homolog B (S. cerevisiae)
mm10_v2_chr14_+_115042752_115042879	0.359305	Hoxa10	ENSMUST00000134140.2|Mir17hg|ENSMUSG00000089726.2|Mir17 host gene 1 (non-protein coding)
mm10_v2_chr1_+_182124737_182124800	0.355231	Hoxa10	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr17_+_6079928_6079939	0.350988	Hoxa10	ENSMUST00000100955.2|Gtf2h5|ENSMUSG00000034345.8|general transcription factor IIH, polypeptide 5
mm10_v2_chr5_+_121777929_121777929	0.350866	Hoxa10	ENSMUST00000160821.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr19_-_45591820_45591878	0.347139	Hoxa10	ENSMUST00000160003.1|Fbxw4|ENSMUSG00000040913.4|F-box and WD-40 domain protein 4 	ENSMUST00000162879.1|Fbxw4|ENSMUSG00000040913.4|F-box and WD-40 domain protein 4
mm10_v2_chr2_-_34755229_34755252	0.345341	Hoxa10	ENSMUST00000102800.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chrM_+_3906_3926	0.342961	Hoxa10	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr13_-_92030897_92030908	0.340306	Hoxa10	ENSMUST00000149630.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr4_-_109202217_109202272	0.336532	Hoxa10	ENSMUST00000160774.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000030288.7|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000162787.2|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr7_-_126160992_126161013	0.310891	Hoxa10	ENSMUST00000164741.1|Xpo6|ENSMUSG00000000131.9|exportin 6
mm10_v2_chr4_-_119383732_119383780	0.304743	Hoxa10	ENSMUST00000044781.2|Ccdc30|ENSMUSG00000028637.9|coiled-coil domain containing 30 	ENSMUST00000084307.3|Ccdc30|ENSMUSG00000028637.9|coiled-coil domain containing 30
mm10_v2_chr9_+_55326913_55326958	0.297344	Hoxa10	ENSMUST00000085754.3|AI118078|ENSMUSG00000032313.5|expressed sequence AI118078 	ENSMUST00000034862.4|AI118078|ENSMUSG00000032313.5|expressed sequence AI118078
mm10_v2_chr1_-_89933290_89933290	0.295259	Hoxa10	ENSMUST00000036954.7|Gbx2|ENSMUSG00000034486.7|gastrulation brain homeobox 2
mm10_v2_chr11_-_78984831_78984924	0.292269	Hoxa10	ENSMUST00000073001.4|Lgals9|ENSMUSG00000001123.9|lectin, galactose binding, soluble 9 	ENSMUST00000108269.3|Lgals9|ENSMUSG00000001123.9|lectin, galactose binding, soluble 9
mm10_v2_chr2_+_31759932_31759989	0.290521	Hoxa10	ENSMUST00000028190.6|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr6_+_6955993_6956049	0.286624	Hoxa10	ENSMUST00000040826.5|Acn9|ENSMUSG00000042505.6|ACN9 homolog (S. cerevisiae)
mm10_v2_chr18_+_60774510_60774625	0.281963	Hoxa10	ENSMUST00000025511.3|Rps14|ENSMUSG00000024608.4|ribosomal protein S14
mm10_v2_chr12_+_55089202_55089202	0.278711	Hoxa10	ENSMUST00000021407.10|Srp54a|ENSMUSG00000073079.5|signal recognition particle 54A
mm10_v2_chr7_+_29238323_29238394	0.256869	Hoxa10	ENSMUST00000108238.1|Yif1b|ENSMUSG00000030588.5|Yip1 interacting factor homolog B (S. cerevisiae) 	ENSMUST00000032809.3|Yif1b|ENSMUSG00000030588.5|Yip1 interacting factor homolog B (S. cerevisiae) 	ENSMUST00000138128.1|Yif1b|ENSMUSG00000030588.5|Yip1 interacting factor homolog B (S. cerevisiae)
mm10_v2_chr8_-_105565985_105566071	0.256503	Hoxa10	ENSMUST00000013304.7|Atp6v0d1|ENSMUSG00000013160.7|ATPase, H+ transporting, lysosomal V0 subunit D1
mm10_v2_chr9_-_96478596_96478622	0.254236	Hoxa10	ENSMUST00000071301.4|Rnf7|ENSMUSG00000051234.5|ring finger protein 7
mm10_v2_chr11_-_101417615_101417615	0.252003	Hoxa10	ENSMUST00000070395.8|Aarsd1|ENSMUSG00000075528.7|alanyl-tRNA synthetase domain containing 1
mm10_v2_chrX_+_56609843_56609864	0.251921	Hoxa10	ENSMUST00000077741.5|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6 	ENSMUST00000114784.2|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr2_+_15049395_15049447	0.250583	Hoxa10	ENSMUST00000017562.6|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr1_+_127729405_127729418	0.24744	Hoxa10	ENSMUST00000038006.6|Acmsd|ENSMUSG00000026348.6|amino carboxymuconate semialdehyde decarboxylase
mm10_v2_chrM_+_14138_14154	0.241929	Hoxa10	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm10_v2_chr10_-_116549101_116549163	0.24174	Hoxa10	ENSMUST00000164088.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr2_+_31759993_31760173	0.237722	Hoxa10	ENSMUST00000124089.1|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr2_+_69790968_69790973	0.218	Hoxa10	ENSMUST00000180290.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr13_+_18717289_18717316	0.212851	Hoxa10	ENSMUST00000072961.4|Vps41|ENSMUSG00000041236.7|vacuolar protein sorting 41 (yeast)
mm10_v2_chr5_-_21701332_21701404	0.206526	Hoxa10	ENSMUST00000115217.1|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D 	ENSMUST00000060899.8|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D
mm10_v2_chr17_+_33824591_33824644	0.206038	Hoxa10	ENSMUST00000048249.6|Ndufa7|ENSMUSG00000041881.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm10_v2_chr16_+_32419696_32419753	0.203314	Hoxa10	ENSMUST00000014220.8|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2 	ENSMUST00000080316.7|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2
mm10_v2_chr18_-_34651703_34651741	0.203012	Hoxa10	ENSMUST00000025228.5|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23 	ENSMUST00000133181.1|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23
mm10_v2_chr1_+_59684949_59685023	0.202616	Hoxa10	ENSMUST00000027174.3|Nop58|ENSMUSG00000026020.3|NOP58 ribonucleoprotein
mm10_v2_chr7_-_29125142_29125160	0.202168	Hoxa10	ENSMUST00000179893.1|Ryr1|ENSMUSG00000030592.10|ryanodine receptor 1, skeletal muscle 	ENSMUST00000032813.9|Ryr1|ENSMUSG00000030592.10|ryanodine receptor 1, skeletal muscle
mm10_v2_chrX_+_166170449_166170512	0.19716	Hoxa10	ENSMUST00000130880.2|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000056410.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000096252.3|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000087169.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8
mm10_v2_chr18_+_37518341_37518359	0.189959	Hoxa10	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr15_+_85510812_85510812	0.187738	Hoxa10	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr17_-_25844417_25844428	0.183673	Hoxa10	ENSMUST00000176591.1|Rhot2|ENSMUSG00000025733.11|ras homolog gene family, member T2
mm10_v2_chr2_+_36230426_36230491	0.166516	Hoxa10	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr12_+_84361968_84362018	0.164422	Hoxa10	ENSMUST00000021661.6|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr7_+_102229999_102230046	0.157796	Hoxa10	ENSMUST00000120119.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr12_+_55239326_55239326	0.156107	Hoxa10	ENSMUST00000164243.1|Srp54c|ENSMUSG00000021020.9|signal recognition particle 54C
mm10_v2_chr9_+_122888471_122888471	0.147275	Hoxa10	ENSMUST00000063980.6|Zkscan7|ENSMUSG00000063488.5|zinc finger with KRAB and SCAN domains 7
mm10_v2_chr8_-_41054771_41054802	0.146598	Hoxa10	ENSMUST00000093534.4|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr1_+_153874335_153874354	0.137028	Hoxa10	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr1_+_155158703_155158776	0.132384	Hoxa10	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr6_-_122856151_122856163	0.130706	Hoxa10	ENSMUST00000042081.8|C3ar1|ENSMUSG00000040552.8|complement component 3a receptor 1
mm10_v2_chr6_-_24528013_24528034	0.130379	Hoxa10	ENSMUST00000023851.5|Ndufa5|ENSMUSG00000023089.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
mm10_v2_chr4_+_115057410_115057438	0.128207	Hoxa10	ENSMUST00000136946.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr1_-_147281942_147281942	0.122628	Hoxa10	ENSMUST00000066758.2|Gm9931|ENSMUSG00000053988.2|predicted gene 9931
mm10_v2_chrM_-_14060_14074	0.115834	Hoxa10	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr10_+_29143996_29144126	0.107718	Hoxa10	ENSMUST00000092629.2|Soga3|ENSMUSG00000038916.6|SOGA family member 3
mm10_v2_chr9_-_86464944_86464958	0.104076	Hoxa10	ENSMUST00000034986.7|Ube2cbp|ENSMUSG00000032415.8|ubiquitin-conjugating enzyme E2C binding protein
mm10_v2_chr3_+_26331150_26331150	0.097226	Hoxa10	ENSMUST00000099182.2|A830092H15Rik|ENSMUSG00000074664.2|RIKEN cDNA A830092H15 gene
mm10_v2_chr18_-_15063560_15063617	0.0947154	Hoxa10	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr14_+_60732906_60733009	0.093666	Hoxa10	ENSMUST00000162945.1|Spata13|ENSMUSG00000021990.9|spermatogenesis associated 13
mm10_v2_chr18_+_37513652_37513652	0.0921225	Hoxa10	ENSMUST00000061405.4|Pcdhb21|ENSMUSG00000044022.4|protocadherin beta 21
mm10_v2_chr2_-_91255995_91256047	0.0680906	Hoxa10	ENSMUST00000180732.1|Gm17281|ENSMUSG00000097317.1|predicted gene, 17281
mm10_v2_chr2_+_164823001_164823040	0.0667563	Hoxa10	ENSMUST00000132282.1|Zswim1|ENSMUSG00000017764.2|zinc finger SWIM-type containing 1
mm10_v2_chr2_-_174464063_174464105	0.064709	Hoxa10	ENSMUST00000016396.7|Atp5e|ENSMUSG00000016252.7|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
mm10_v2_chr4_+_115057683_115057811	0.0629415	Hoxa10	ENSMUST00000161601.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr7_+_51880312_51880356	0.0561862	Hoxa10	ENSMUST00000145049.1|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr4_-_11981265_11981265	0.0556818	Hoxa10	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr17_+_6079786_6079892	0.0553561	Hoxa10	ENSMUST00000039487.3|Gtf2h5|ENSMUSG00000034345.8|general transcription factor IIH, polypeptide 5
mm10_v2_chr11_+_85312164_85312180	0.0311218	Hoxa10	ENSMUST00000127717.1|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr14_-_54686060_54686167	0.0151792	Hoxa10	ENSMUST00000125265.1|Acin1|ENSMUSG00000022185.12|apoptotic chromatin condensation inducer 1
mm10_v2_chr13_+_109926832_109926881	0.00618774	Hoxa10	ENSMUST00000117420.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
