mm10_v2_chr17_+_35076902_35077073	11.7214	Hoxa11_Hoxc12	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr1_-_56978534_56978650	7.86979	Hoxa11_Hoxc12	ENSMUST00000177282.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr6_-_55681257_55681271	5.80605	Hoxa11_Hoxc12	ENSMUST00000044767.8|Neurod6|ENSMUSG00000037984.8|neurogenic differentiation 6
mm10_v2_chr1_+_178529113_178529134	5.54386	Hoxa11_Hoxc12	ENSMUST00000161017.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr1_+_43730593_43730633	5.24777	Hoxa11_Hoxc12	ENSMUST00000027217.8|1500015O10Rik|ENSMUSG00000026051.8|RIKEN cDNA 1500015O10 gene
mm10_v2_chr2_+_28205648_28205672	5.11649	Hoxa11_Hoxc12	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr14_+_80000292_80000309	4.04658	Hoxa11_Hoxc12	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr16_-_57231434_57231509	3.7281	Hoxa11_Hoxc12	ENSMUST00000023431.6|Tbc1d23|ENSMUSG00000022749.6|TBC1 domain family, member 23
mm10_v2_chr14_+_27622433_27622543	3.31628	Hoxa11_Hoxc12	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr15_-_43869993_43870058	3.2795	Hoxa11_Hoxc12	ENSMUST00000067469.4|Tmem74|ENSMUSG00000054409.4|transmembrane protein 74
mm10_v2_chr18_+_69346143_69346203	3.13021	Hoxa11_Hoxc12	ENSMUST00000114980.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr6_+_108213086_108213123	3.03226	Hoxa11_Hoxc12	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr9_-_55919605_55919605	3.00602	Hoxa11_Hoxc12	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr17_+_8283762_8283852	2.98082	Hoxa11_Hoxc12	ENSMUST00000155364.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000046754.8|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000124023.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1
mm10_v2_chr17_+_6270475_6270475	2.95971	Hoxa11_Hoxc12	ENSMUST00000088940.4|Tmem181a|ENSMUSG00000038141.8|transmembrane protein 181A
mm10_v2_chr16_-_45408955_45409053	2.88207	Hoxa11_Hoxc12	ENSMUST00000163230.1|Cd200|ENSMUSG00000022661.8|CD200 antigen
mm10_v2_chr2_+_23068168_23068241	2.79674	Hoxa11_Hoxc12	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr13_+_16014457_16014475	2.77343	Hoxa11_Hoxc12	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr16_-_74411776_74411792	2.65288	Hoxa11_Hoxc12	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr18_-_43393346_43393381	2.57761	Hoxa11_Hoxc12	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr11_-_115628125_115628164	2.51592	Hoxa11_Hoxc12	ENSMUST00000155709.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000021089.4|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr16_-_16600533_16600576	2.4931	Hoxa11_Hoxc12	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr11_-_115627948_115628122	2.46609	Hoxa11_Hoxc12	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr17_-_6477102_6477102	2.45587	Hoxa11_Hoxc12	ENSMUST00000167717.2|Tmem181b-ps|ENSMUSG00000079733.3|transmembrane protein 181B, pseudogene
mm10_v2_chr8_+_40307458_40307458	2.1243	Hoxa11_Hoxc12	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr11_-_115628260_115628298	2.09383	Hoxa11_Hoxc12	ENSMUST00000178003.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr17_+_22361453_22361522	2.00434	Hoxa11_Hoxc12	ENSMUST00000149699.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000088765.2|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000072477.4|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000121315.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758
mm10_v2_chr5_+_66968961_66969132	1.97206	Hoxa11_Hoxc12	ENSMUST00000132991.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chrX_+_73064787_73064787	1.90013	Hoxa11_Hoxc12	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chrX_-_165004829_165004829	1.89169	Hoxa11_Hoxc12	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr11_-_62457772_62457835	1.86006	Hoxa11_Hoxc12	ENSMUST00000127471.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr5_-_20951769_20951824	1.83814	Hoxa11_Hoxc12	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr3_+_32436376_32436376	1.83456	Hoxa11_Hoxc12	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr8_-_69625503_69625559	1.79999	Hoxa11_Hoxc12	ENSMUST00000121886.1|Zfp868|ENSMUSG00000060427.9|zinc finger protein 868
mm10_v2_chrX_+_20364481_20364616	1.73749	Hoxa11_Hoxc12	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr6_+_91878034_91878089	1.73307	Hoxa11_Hoxc12	ENSMUST00000037783.5|Ccdc174|ENSMUSG00000034083.10|coiled-coil domain containing 174
mm10_v2_chrX_+_41401304_41401427	1.58537	Hoxa11_Hoxc12	ENSMUST00000076349.5|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr17_-_13761441_13761601	1.48775	Hoxa11_Hoxc12	ENSMUST00000127032.1|Tcte2|ENSMUSG00000038347.8|t-complex-associated testis expressed 2
mm10_v2_chr6_+_96115249_96115311	1.45426	Hoxa11_Hoxc12	ENSMUST00000075080.5|Fam19a1|ENSMUSG00000059187.6|family with sequence similarity 19, member A1
mm10_v2_chr4_+_102741287_102741298	1.42972	Hoxa11_Hoxc12	ENSMUST00000097948.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr2_-_180824596_180824630	1.41899	Hoxa11_Hoxc12	ENSMUST00000148700.1|Gm14340|ENSMUSG00000074507.6|predicted gene 14340
mm10_v2_chr7_+_4460687_4460730	1.38574	Hoxa11_Hoxc12	ENSMUST00000167298.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1 	ENSMUST00000171445.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1
mm10_v2_chr3_+_88621102_88621130	1.36794	Hoxa11_Hoxc12	ENSMUST00000029694.7|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000176804.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr11_+_77216180_77216287	1.31071	Hoxa11_Hoxc12	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr9_+_3404058_3404098	1.28626	Hoxa11_Hoxc12	ENSMUST00000027027.5|Cwf19l2|ENSMUSG00000025898.5|CWF19-like 2, cell cycle control (S. pombe)
mm10_v2_chr3_-_117360876_117360876	1.24046	Hoxa11_Hoxc12	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr18_+_37655891_37655915	1.21699	Hoxa11_Hoxc12	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr19_+_4097392_4097415	1.21171	Hoxa11_Hoxc12	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chrX_+_41401128_41401200	1.19767	Hoxa11_Hoxc12	ENSMUST00000115103.2|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr6_-_118455475_118455528	1.14918	Hoxa11_Hoxc12	ENSMUST00000161519.1|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248 	ENSMUST00000069292.7|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248
mm10_v2_chr17_-_24455265_24455345	1.14497	Hoxa11_Hoxc12	ENSMUST00000056032.7|E4f1|ENSMUSG00000024137.8|E4F transcription factor 1
mm10_v2_chr7_-_73537621_73537766	1.12758	Hoxa11_Hoxc12	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr13_+_98263105_98263177	1.12387	Hoxa11_Hoxc12	ENSMUST00000150916.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr2_-_104712122_104712180	1.12174	Hoxa11_Hoxc12	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr7_-_141435327_141435397	1.08237	Hoxa11_Hoxc12	ENSMUST00000138865.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr13_+_98263242_98263302	1.01505	Hoxa11_Hoxc12	ENSMUST00000022164.8|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000150352.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr8_-_69373914_69373914	1.00582	Hoxa11_Hoxc12	ENSMUST00000095282.1|Gm10311|ENSMUSG00000071083.1|predicted gene 10311
mm10_v2_chr18_+_37333853_37333946	0.997744	Hoxa11_Hoxc12	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr5_-_123666682_123666695	0.970452	Hoxa11_Hoxc12	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr13_+_109685994_109686156	0.954498	Hoxa11_Hoxc12	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr12_+_59066908_59066931	0.935081	Hoxa11_Hoxc12	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr2_-_120970706_120970761	0.933689	Hoxa11_Hoxc12	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr5_-_73256555_73256636	0.926266	Hoxa11_Hoxc12	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr13_+_98263187_98263221	0.909077	Hoxa11_Hoxc12	ENSMUST00000091356.3|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000123924.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr16_+_23224724_23224804	0.879345	Hoxa11_Hoxc12	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr15_-_101850778_101850792	0.847621	Hoxa11_Hoxc12	ENSMUST00000023790.3|Krt1|ENSMUSG00000046834.6|keratin 1
mm10_v2_chr13_-_54749849_54749893	0.837176	Hoxa11_Hoxc12	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr3_+_129532386_129532440	0.835987	Hoxa11_Hoxc12	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr11_-_23895208_23895280	0.803388	Hoxa11_Hoxc12	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr7_-_141434532_141434605	0.80198	Hoxa11_Hoxc12	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr12_-_23780265_23780265	0.800414	Hoxa11_Hoxc12	ENSMUST00000072014.4|Gm10330|ENSMUSG00000071362.2|predicted gene 10330
mm10_v2_chr10_+_90071095_90071117	0.7883	Hoxa11_Hoxc12	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr1_+_182409162_182409184	0.700444	Hoxa11_Hoxc12	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr7_-_46795881_46796085	0.650692	Hoxa11_Hoxc12	ENSMUST00000107653.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000107654.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000014562.7|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000152759.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr3_+_79885930_79886002	0.638177	Hoxa11_Hoxc12	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr7_-_46795661_46795722	0.607811	Hoxa11_Hoxc12	ENSMUST00000123725.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr8_+_104250925_104250940	0.581028	Hoxa11_Hoxc12	ENSMUST00000098464.4|Cklf|ENSMUSG00000054400.9|chemokine-like factor
mm10_v2_chr9_-_50659780_50659801	0.570589	Hoxa11_Hoxc12	ENSMUST00000034567.3|Dlat|ENSMUSG00000000168.3|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm10_v2_chr11_-_30986326_30986372	0.558303	Hoxa11_Hoxc12	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr4_-_129378116_129378116	0.556617	Hoxa11_Hoxc12	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr1_-_93101825_93101849	0.544038	Hoxa11_Hoxc12	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr18_-_46280820_46280850	0.525235	Hoxa11_Hoxc12	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr13_-_66851513_66851513	0.501293	Hoxa11_Hoxc12	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr4_-_45408646_45408768	0.458759	Hoxa11_Hoxc12	ENSMUST00000153904.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000132815.2|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000107796.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000116341.3|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51
mm10_v2_chr6_+_42286709_42286856	0.437912	Hoxa11_Hoxc12	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr19_+_5406815_5406880	0.433797	Hoxa11_Hoxc12	ENSMUST00000174412.1|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene 	ENSMUST00000153017.2|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene
mm10_v2_chr9_-_44407526_44407551	0.421373	Hoxa11_Hoxc12	ENSMUST00000034623.6|Trappc4|ENSMUSG00000032112.9|trafficking protein particle complex 4
mm10_v2_chr11_-_62789445_62789478	0.41942	Hoxa11_Hoxc12	ENSMUST00000054654.6|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr17_-_21845759_21845759	0.413373	Hoxa11_Hoxc12	ENSMUST00000084141.4|Zfp820|ENSMUSG00000069743.4|zinc finger protein 820
mm10_v2_chr10_-_120979327_120979373	0.40694	Hoxa11_Hoxc12	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr6_+_42286676_42286687	0.403921	Hoxa11_Hoxc12	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr16_-_23225334_23225368	0.392726	Hoxa11_Hoxc12	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr7_+_43634718_43634741	0.375155	Hoxa11_Hoxc12	ENSMUST00000032663.8|Ceacam18|ENSMUSG00000030472.8|carcinoembryonic antigen-related cell adhesion molecule 18
mm10_v2_chr13_-_23430826_23431022	0.358692	Hoxa11_Hoxc12	ENSMUST00000153753.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene 	ENSMUST00000141543.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene
mm10_v2_chr11_-_5542177_5542219	0.352957	Hoxa11_Hoxc12	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr13_-_12464925_12464949	0.345449	Hoxa11_Hoxc12	ENSMUST00000124888.1|Lgals8|ENSMUSG00000057554.7|lectin, galactose binding, soluble 8
mm10_v2_chr12_+_78226627_78226655	0.333562	Hoxa11_Hoxc12	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr5_+_32611171_32611245	0.320362	Hoxa11_Hoxc12	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr3_+_89177463_89177543	0.317725	Hoxa11_Hoxc12	ENSMUST00000029684.8|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000120697.1|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000098941.4|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3
mm10_v2_chr11_-_62789402_62789443	0.282326	Hoxa11_Hoxc12	ENSMUST00000108705.1|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr6_-_87809757_87809787	0.248299	Hoxa11_Hoxc12	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr6_-_29216301_29216364	0.241937	Hoxa11_Hoxc12	ENSMUST00000162739.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000162099.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000159124.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr19_-_46338632_46338670	0.214766	Hoxa11_Hoxc12	ENSMUST00000051234.8|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2 	ENSMUST00000167861.1|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2
mm10_v2_chr8_+_105225145_105225193	0.184156	Hoxa11_Hoxc12	ENSMUST00000034361.3|D230025D16Rik|ENSMUSG00000031889.3|RIKEN cDNA D230025D16 gene
mm10_v2_chr13_-_66852017_66852017	0.136536	Hoxa11_Hoxc12	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr16_+_75592844_75592928	0.135582	Hoxa11_Hoxc12	ENSMUST00000114249.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000046378.7|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000114253.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11
mm10_v2_chr1_-_189922338_189922363	0.132333	Hoxa11_Hoxc12	ENSMUST00000027897.7|Smyd2|ENSMUSG00000026603.7|SET and MYND domain containing 2
mm10_v2_chr12_-_20900867_20900867	0.113023	Hoxa11_Hoxc12	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr11_-_97699634_97699698	0.111423	Hoxa11_Hoxc12	ENSMUST00000103148.1|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2 	ENSMUST00000169807.1|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr11_+_55213783_55213814	0.0993045	Hoxa11_Hoxc12	ENSMUST00000108867.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr3_-_142881942_142882017	0.0958815	Hoxa11_Hoxc12	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr14_-_104522615_104522707	0.0949555	Hoxa11_Hoxc12	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr6_-_29216277_29216292	0.0386464	Hoxa11_Hoxc12	ENSMUST00000162215.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr1_+_58646608_58646608	0.0352344	Hoxa11_Hoxc12	ENSMUST00000081455.4|Gm10068|ENSMUSG00000059647.4|predicted gene 10068
mm10_v2_chr7_-_30612731_30612744	0.020121	Hoxa11_Hoxc12	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
