mm10_v2_chr5_+_139543889_139543904	6.04938	Hoxa2	ENSMUST00000174792.1|Uncx|ENSMUSG00000029546.11|UNC homeobox 	ENSMUST00000031523.8|Uncx|ENSMUSG00000029546.11|UNC homeobox
mm10_v2_chr12_+_109747903_109748051	5.21489	Hoxa2	ENSMUST00000183084.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000182300.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr16_-_23890805_23890861	4.5863	Hoxa2	ENSMUST00000004480.3|Sst|ENSMUSG00000004366.3|somatostatin
mm10_v2_chr7_+_45163915_45163926	3.67514	Hoxa2	ENSMUST00000085374.5|Slc17a7|ENSMUSG00000070570.4|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm10_v2_chr5_-_24527276_24527276	3.02718	Hoxa2	ENSMUST00000088311.4|Gbx1|ENSMUSG00000067724.4|gastrulation brain homeobox 1
mm10_v2_chr2_-_117342949_117343001	2.4247	Hoxa2	ENSMUST00000102534.4|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1
mm10_v2_chr7_+_144838590_144838614	2.34171	Hoxa2	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr2_-_117342831_117342896	2.32359	Hoxa2	ENSMUST00000178884.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1
mm10_v2_chr13_+_117220584_117220637	2.26842	Hoxa2	ENSMUST00000022242.7|Emb|ENSMUSG00000021728.7|embigin
mm10_v2_chr3_+_55782500_55782521	2.24617	Hoxa2	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr8_-_87959560_87959595	2.20573	Hoxa2	ENSMUST00000109655.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr2_-_117342709_117342822	2.08536	Hoxa2	ENSMUST00000173541.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1 	ENSMUST00000172901.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1 	ENSMUST00000173252.1|Rasgrp1|ENSMUSG00000027347.12|RAS guanyl releasing protein 1
mm10_v2_chr9_-_106158109_106158138	2.06245	Hoxa2	ENSMUST00000159809.1|Glyctk|ENSMUSG00000020258.9|glycerate kinase 	ENSMUST00000162562.1|Glyctk|ENSMUSG00000020258.9|glycerate kinase 	ENSMUST00000036382.6|Glyctk|ENSMUSG00000020258.9|glycerate kinase 	ENSMUST00000112543.2|Glyctk|ENSMUSG00000020258.9|glycerate kinase
mm10_v2_chr9_+_51621425_51621425	2.04835	Hoxa2	ENSMUST00000089534.4|Gm7293|ENSMUSG00000078308.1|predicted gene 7293
mm10_v2_chr14_-_34374617_34374789	1.99991	Hoxa2	ENSMUST00000023826.4|Sncg|ENSMUSG00000023064.4|synuclein, gamma
mm10_v2_chr5_+_115235836_115235836	1.9316	Hoxa2	ENSMUST00000081497.6|Pop5|ENSMUSG00000060152.8|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm10_v2_chr10_-_92162753_92162765	1.89265	Hoxa2	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr14_+_11227511_11227552	1.88436	Hoxa2	ENSMUST00000080237.3|Rpl21-ps4|ENSMUSG00000072714.1|ribosomal protein L21, pseudogene 4
mm10_v2_chr2_-_84775420_84775444	1.83587	Hoxa2	ENSMUST00000111641.1|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr2_-_84775388_84775411	1.81542	Hoxa2	ENSMUST00000023994.3|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr2_+_103957976_103958021	1.71593	Hoxa2	ENSMUST00000156813.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2 	ENSMUST00000170926.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2
mm10_v2_chr19_+_4711153_4711258	1.64085	Hoxa2	ENSMUST00000008991.6|Sptbn2|ENSMUSG00000067889.4|spectrin beta, non-erythrocytic 2
mm10_v2_chr8_-_110902442_110902467	1.6294	Hoxa2	ENSMUST00000041382.6|Fuk|ENSMUSG00000033703.8|fucokinase
mm10_v2_chr4_+_15881255_15881272	1.61511	Hoxa2	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chr1_-_133907053_133907172	1.56405	Hoxa2	ENSMUST00000149380.1|Optc|ENSMUSG00000010311.9|opticin 	ENSMUST00000124051.2|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr6_+_5390387_5390427	1.56174	Hoxa2	ENSMUST00000183358.1|Asb4|ENSMUSG00000042607.9|ankyrin repeat and SOCS box-containing 4
mm10_v2_chr15_+_79030874_79030933	1.55564	Hoxa2	ENSMUST00000171999.1|Gcat|ENSMUSG00000006378.7|glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase) 	ENSMUST00000006544.7|Gcat|ENSMUSG00000006378.7|glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
mm10_v2_chr3_-_107931817_107931885	1.51678	Hoxa2	ENSMUST00000004137.4|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr18_-_61259987_61259987	1.47966	Hoxa2	ENSMUST00000170335.2|Rps2-ps10|ENSMUSG00000091957.2|ribosomal protein S2, pseudogene 10
mm10_v2_chr5_+_138363719_138363719	1.36943	Hoxa2	ENSMUST00000100526.2|Gm10874|ENSMUSG00000075591.2|predicted gene 10874
mm10_v2_chr9_+_58134017_58134075	1.34964	Hoxa2	ENSMUST00000134955.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000147134.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000170397.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr7_-_127260677_127260709	1.34467	Hoxa2	ENSMUST00000035276.4|Dctpp1|ENSMUSG00000042462.4|dCTP pyrophosphatase 1
mm10_v2_chr5_-_98566762_98566762	1.34021	Hoxa2	ENSMUST00000086912.4|1700010H22Rik|ENSMUSG00000067101.4|RIKEN cDNA 1700010H22 gene
mm10_v2_chrX_-_134161928_134161928	1.33233	Hoxa2	ENSMUST00000033611.4|Xkrx|ENSMUSG00000031258.4|X Kell blood group precursor related X linked
mm10_v2_chr3_-_116253467_116253484	1.3149	Hoxa2	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr19_+_24875679_24875689	1.3057	Hoxa2	ENSMUST00000073080.5|Gm10053|ENSMUSG00000058927.5|predicted gene 10053
mm10_v2_chr6_+_4504814_4504814	1.29509	Hoxa2	ENSMUST00000141483.1|Col1a2|ENSMUSG00000029661.10|collagen, type I, alpha 2
mm10_v2_chr1_-_133906973_133907014	1.29085	Hoxa2	ENSMUST00000126123.1|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr4_-_92191749_92191749	1.28418	Hoxa2	ENSMUST00000123179.1|Gm12666|ENSMUSG00000066107.6|predicted gene 12666
mm10_v2_chr7_+_100537192_100537232	1.27723	Hoxa2	ENSMUST00000120454.1|Coa4|ENSMUSG00000044881.6|cytochrome c oxidase assembly factor 4
mm10_v2_chr9_+_58129062_58129088	1.27278	Hoxa2	ENSMUST00000085677.2|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr16_+_34784917_34784935	1.24605	Hoxa2	ENSMUST00000023538.8|Mylk|ENSMUSG00000022836.10|myosin, light polypeptide kinase
mm10_v2_chr3_+_122044428_122044469	1.24144	Hoxa2	ENSMUST00000013995.8|Abca4|ENSMUSG00000028125.8|ATP-binding cassette, sub-family A (ABC1), member 4
mm10_v2_chr9_+_58129321_58129349	1.23933	Hoxa2	ENSMUST00000034880.3|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr16_+_92498122_92498175	1.23358	Hoxa2	ENSMUST00000023670.3|Clic6|ENSMUSG00000022949.3|chloride intracellular channel 6
mm10_v2_chr4_+_100776664_100776692	1.23205	Hoxa2	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr18_-_20682963_20683006	1.2299	Hoxa2	ENSMUST00000165229.2|Gm10269|ENSMUSG00000091449.2|predicted gene 10269
mm10_v2_chr15_-_55548164_55548164	1.20699	Hoxa2	ENSMUST00000165356.1|Mrpl13|ENSMUSG00000022370.7|mitochondrial ribosomal protein L13
mm10_v2_chr8_+_48110156_48110211	1.20326	Hoxa2	ENSMUST00000174379.1|Dctd|ENSMUSG00000031562.9|dCMP deaminase
mm10_v2_chr17_-_71310952_71310969	1.19346	Hoxa2	ENSMUST00000024849.9|Emilin2|ENSMUSG00000024053.10|elastin microfibril interfacer 2
mm10_v2_chr9_+_58129476_58129501	1.175	Hoxa2	ENSMUST00000133287.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr19_-_10203880_10204169	1.15989	Hoxa2	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chr9_+_58134535_58134810	1.15886	Hoxa2	ENSMUST00000128378.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000150820.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000167479.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000134450.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr4_+_46450892_46450903	1.14093	Hoxa2	ENSMUST00000102926.4|Anp32b|ENSMUSG00000028333.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
mm10_v2_chr8_+_123411424_123411562	1.09638	Hoxa2	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr10_+_5593718_5593739	1.08756	Hoxa2	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr10_-_95673451_95673451	1.07184	Hoxa2	ENSMUST00000099328.1|Anapc15-ps|ENSMUSG00000074780.1|anaphase prompoting complex C subunit 15, pseudogene
mm10_v2_chr15_-_102350692_102350771	1.02035	Hoxa2	ENSMUST00000041208.7|Aaas|ENSMUSG00000036678.7|achalasia, adrenocortical insufficiency, alacrimia
mm10_v2_chr5_-_30945393_30945480	1.00922	Hoxa2	ENSMUST00000031051.6|Cgref1|ENSMUSG00000029161.6|cell growth regulator with EF hand domain 1
mm10_v2_chr5_-_130024280_130024381	0.998486	Hoxa2	ENSMUST00000161640.1|Asl|ENSMUSG00000025533.9|argininosuccinate lyase 	ENSMUST00000161884.1|Asl|ENSMUSG00000025533.9|argininosuccinate lyase 	ENSMUST00000161094.1|Asl|ENSMUSG00000025533.9|argininosuccinate lyase
mm10_v2_chr3_+_134828993_134829015	0.992881	Hoxa2	ENSMUST00000029822.4|Tacr3|ENSMUSG00000028172.4|tachykinin receptor 3
mm10_v2_chr15_-_78773452_78773486	0.991446	Hoxa2	ENSMUST00000018313.5|Mfng|ENSMUSG00000018169.6|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr4_+_116596672_116596730	0.987121	Hoxa2	ENSMUST00000051869.7|Ccdc17|ENSMUSG00000034035.12|coiled-coil domain containing 17
mm10_v2_chr3_-_150073620_150073620	0.984104	Hoxa2	ENSMUST00000057740.5|Rpsa-ps10|ENSMUSG00000047676.5|ribosomal protein SA, pseudogene 10
mm10_v2_chr9_-_71485893_71485975	0.978675	Hoxa2	ENSMUST00000034720.5|Polr2m|ENSMUSG00000032199.6|polymerase (RNA) II (DNA directed) polypeptide M
mm10_v2_chr7_+_100495987_100496079	0.97497	Hoxa2	ENSMUST00000133044.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr2_-_126709567_126709567	0.972539	Hoxa2	ENSMUST00000099423.2|Gm10774|ENSMUSG00000074846.2|predicted pseudogene 10774
mm10_v2_chr15_-_81729864_81729919	0.963411	Hoxa2	ENSMUST00000171115.1|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1 	ENSMUST00000170134.1|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1 	ENSMUST00000052374.5|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1
mm10_v2_chr8_+_48109949_48110013	0.9412	Hoxa2	ENSMUST00000170263.2|Dctd|ENSMUSG00000031562.9|dCMP deaminase 	ENSMUST00000033966.6|Dctd|ENSMUSG00000031562.9|dCMP deaminase
mm10_v2_chr5_+_37735519_37735545	0.926578	Hoxa2	ENSMUST00000073554.3|Cytl1|ENSMUSG00000062329.3|cytokine-like 1
mm10_v2_chr17_+_78491549_78491565	0.914594	Hoxa2	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr3_-_92429403_92429426	0.912344	Hoxa2	ENSMUST00000047300.7|Gm9774|ENSMUSG00000042165.7|predicted pseudogene 9774
mm10_v2_chr10_-_26078987_26079052	0.902721	Hoxa2	ENSMUST00000066049.6|Tmem200a|ENSMUSG00000049420.8|transmembrane protein 200A
mm10_v2_chr3_+_32708546_32708738	0.899416	Hoxa2	ENSMUST00000029214.7|Actl6a|ENSMUSG00000027671.8|actin-like 6A
mm10_v2_chr17_-_32166879_32166898	0.891874	Hoxa2	ENSMUST00000087723.3|Notch3|ENSMUSG00000038146.7|notch 3
mm10_v2_chr5_+_92683625_92683648	0.889805	Hoxa2	ENSMUST00000168878.1|Shroom3|ENSMUSG00000029381.9|shroom family member 3
mm10_v2_chr6_+_14901344_14901364	0.882106	Hoxa2	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr13_-_97099296_97099296	0.868473	Hoxa2	ENSMUST00000071118.4|Gm6169|ENSMUSG00000057762.4|predicted gene 6169
mm10_v2_chr13_+_108670576_108670581	0.855795	Hoxa2	ENSMUST00000074680.6|Rps3a3|ENSMUSG00000059751.6|ribosomal protein S3A3
mm10_v2_chr9_+_50856924_50856987	0.853867	Hoxa2	ENSMUST00000174628.1|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform 	ENSMUST00000034560.7|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform 	ENSMUST00000114437.2|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform 	ENSMUST00000175645.1|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform 	ENSMUST00000176349.1|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform 	ENSMUST00000176798.1|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform 	ENSMUST00000175640.1|Ppp2r1b|ENSMUSG00000032058.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform
mm10_v2_chr7_-_27985796_27985796	0.846344	Hoxa2	ENSMUST00000099111.3|Zfp850|ENSMUSG00000074608.3|zinc finger protein 850
mm10_v2_chr17_-_71002488_71002592	0.845952	Hoxa2	ENSMUST00000148960.1|Myl12a|ENSMUSG00000024048.8|myosin, light chain 12A, regulatory, non-sarcomeric
mm10_v2_chr9_-_21760275_21760294	0.842503	Hoxa2	ENSMUST00000098942.4|Spc24|ENSMUSG00000074476.5|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm10_v2_chr12_-_87233556_87233556	0.832205	Hoxa2	ENSMUST00000021423.7|Noxred1|ENSMUSG00000072919.3|NADP+ dependent oxidoreductase domain containing 1
mm10_v2_chr5_-_100373484_100373527	0.831836	Hoxa2	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr12_+_108334341_108334406	0.80977	Hoxa2	ENSMUST00000021684.4|Cyp46a1|ENSMUSG00000021259.4|cytochrome P450, family 46, subfamily a, polypeptide 1
mm10_v2_chr4_+_134510999_134511076	0.8055	Hoxa2	ENSMUST00000105866.2|Aunip|ENSMUSG00000078521.2|aurora kinase A and ninein interacting protein
mm10_v2_chr11_-_100356116_100356128	0.805055	Hoxa2	ENSMUST00000138603.2|Hap1|ENSMUSG00000006930.9|huntingtin-associated protein 1
mm10_v2_chr9_+_15520830_15520846	0.798308	Hoxa2	ENSMUST00000178999.1|Smco4|ENSMUSG00000058173.5|single-pass membrane protein with coiled-coil domains 4
mm10_v2_chr14_+_124005355_124005355	0.790047	Hoxa2	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr2_-_149798701_149798743	0.779895	Hoxa2	ENSMUST00000148202.1|Gm14133|ENSMUSG00000087029.1|predicted gene 14133 	ENSMUST00000139471.1|Gm14133|ENSMUSG00000087029.1|predicted gene 14133
mm10_v2_chr18_+_56562443_56562593	0.777002	Hoxa2	ENSMUST00000130163.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export 	ENSMUST00000132628.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export
mm10_v2_chr18_-_35722330_35722381	0.77338	Hoxa2	ENSMUST00000133064.1|Ecscr|ENSMUSG00000073599.3|endothelial cell surface expressed chemotaxis and apoptosis regulator
mm10_v2_chr17_-_25880236_25880305	0.772782	Hoxa2	ENSMUST00000176696.1|Wfikkn1|ENSMUSG00000071192.5|WAP, FS, Ig, KU, and NTR-containing protein 1 	ENSMUST00000095487.5|Wfikkn1|ENSMUSG00000071192.5|WAP, FS, Ig, KU, and NTR-containing protein 1
mm10_v2_chr7_+_27473761_27473773	0.769759	Hoxa2	ENSMUST00000068641.6|Sertad3|ENSMUSG00000055200.6|SERTA domain containing 3
mm10_v2_chr10_+_14523062_14523065	0.769656	Hoxa2	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr5_+_24985840_24985862	0.753189	Hoxa2	ENSMUST00000075081.6|1500035N22Rik|ENSMUSG00000059631.6|RIKEN cDNA 1500035N22 gene
mm10_v2_chr11_-_58801944_58801968	0.748388	Hoxa2	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr7_-_28050028_28050101	0.748364	Hoxa2	ENSMUST00000032824.9|Psmc4|ENSMUSG00000030603.9|proteasome (prosome, macropain) 26S subunit, ATPase, 4
mm10_v2_chr12_+_87443896_87443946	0.746607	Hoxa2	ENSMUST00000161023.1|Slirp|ENSMUSG00000021040.9|SRA stem-loop interacting RNA binding protein 	ENSMUST00000160488.1|Slirp|ENSMUSG00000021040.9|SRA stem-loop interacting RNA binding protein 	ENSMUST00000077462.7|Slirp|ENSMUSG00000021040.9|SRA stem-loop interacting RNA binding protein 	ENSMUST00000160880.1|Slirp|ENSMUSG00000021040.9|SRA stem-loop interacting RNA binding protein
mm10_v2_chr6_+_142413441_142413441	0.743062	Hoxa2	ENSMUST00000088263.4|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr13_-_97760588_97760633	0.740628	Hoxa2	ENSMUST00000074072.3|Gm10260|ENSMUSG00000069117.3|predicted gene 10260
mm10_v2_chr14_-_13961202_13961278	0.73972	Hoxa2	ENSMUST00000065865.8|Thoc7|ENSMUSG00000053453.8|THO complex 7 homolog (Drosophila)
mm10_v2_chr3_+_85915722_85915722	0.739195	Hoxa2	ENSMUST00000054148.7|Gm9790|ENSMUSG00000044330.7|predicted gene 9790
mm10_v2_chr14_-_59365410_59365461	0.736524	Hoxa2	ENSMUST00000161031.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D 	ENSMUST00000160425.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr4_-_42084291_42084291	0.735345	Hoxa2	ENSMUST00000177937.1|Gm21968|ENSMUSG00000095881.1|predicted gene, 21968
mm10_v2_chr15_+_59648350_59648369	0.731525	Hoxa2	ENSMUST00000067543.6|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr3_-_37125943_37125969	0.724842	Hoxa2	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chrX_+_150547375_150547459	0.723694	Hoxa2	ENSMUST00000066337.6|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid 	ENSMUST00000112715.1|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid
mm10_v2_chr4_-_3973581_3973607	0.702746	Hoxa2	ENSMUST00000089430.4|Gm11808|ENSMUSG00000068240.4|predicted gene 11808
mm10_v2_chr11_-_106998483_106998491	0.702338	Hoxa2	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr9_-_73968901_73968999	0.701297	Hoxa2	ENSMUST00000184666.1|Unc13c|ENSMUSG00000062151.7|unc-13 homolog C (C. elegans)
mm10_v2_chr1_-_155527083_155527111	0.700727	Hoxa2	ENSMUST00000097531.2|Gm5532|ENSMUSG00000073535.4|predicted gene 5532
mm10_v2_chr10_+_102158858_102158889	0.696667	Hoxa2	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr11_-_5898771_5898788	0.694554	Hoxa2	ENSMUST00000102921.3|Myl7|ENSMUSG00000020469.8|myosin, light polypeptide 7, regulatory
mm10_v2_chr17_+_46496753_46496809	0.680687	Hoxa2	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr7_+_119690026_119690026	0.678029	Hoxa2	ENSMUST00000047045.8|Acsm4|ENSMUSG00000047026.8|acyl-CoA synthetase medium-chain family member 4
mm10_v2_chr3_+_124321031_124321113	0.677535	Hoxa2	ENSMUST00000058994.4|Tram1l1|ENSMUSG00000044528.4|translocation associated membrane protein 1-like 1
mm10_v2_chr11_+_5009515_5009530	0.676963	Hoxa2	ENSMUST00000101613.2|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr1_+_85100164_85100164	0.669236	Hoxa2	ENSMUST00000097669.1|Gm10553|ENSMUSG00000073631.1|predicted gene 10553
mm10_v2_chr3_+_89183131_89183207	0.661965	Hoxa2	ENSMUST00000140473.1|Fam189b|ENSMUSG00000032657.9|family with sequence similarity 189, member B 	ENSMUST00000041913.6|Fam189b|ENSMUSG00000032657.9|family with sequence similarity 189, member B
mm10_v2_chrX_+_73192222_73192222	0.661562	Hoxa2	ENSMUST00000101486.4|Xlr3b|ENSMUSG00000073125.4|X-linked lymphocyte-regulated 3B
mm10_v2_chrX_+_8892376_8892423	0.658391	Hoxa2	ENSMUST00000064196.3|B630019K06Rik|ENSMUSG00000052364.3|RIKEN cDNA B630019K06 gene
mm10_v2_chr12_-_87444017_87444017	0.643068	Hoxa2	ENSMUST00000091090.4|2700073G19Rik|ENSMUSG00000021041.7|RIKEN cDNA 2700073G19 gene
mm10_v2_chr7_+_142460834_142460886	0.639602	Hoxa2	ENSMUST00000018963.4|Lsp1|ENSMUSG00000018819.4|lymphocyte specific 1 	ENSMUST00000105967.1|Lsp1|ENSMUSG00000018819.4|lymphocyte specific 1
mm10_v2_chr8_-_8639363_8639363	0.632357	Hoxa2	ENSMUST00000152698.1|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr3_-_157925056_157925077	0.628332	Hoxa2	ENSMUST00000118539.1|Cth|ENSMUSG00000028179.11|cystathionase (cystathionine gamma-lyase)
mm10_v2_chr9_+_115909455_115909455	0.62788	Hoxa2	ENSMUST00000119291.1|Gadl1|ENSMUSG00000056880.6|glutamate decarboxylase-like 1 	ENSMUST00000069651.6|Gadl1|ENSMUSG00000056880.6|glutamate decarboxylase-like 1
mm10_v2_chr1_+_134560157_134560180	0.619777	Hoxa2	ENSMUST00000047714.7|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B
mm10_v2_chr11_+_94327984_94328029	0.611728	Hoxa2	ENSMUST00000107818.2|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40 	ENSMUST00000051221.6|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40
mm10_v2_chrY_-_6237995_6237995	0.609582	Hoxa2	ENSMUST00000177612.1|Gm21746|ENSMUSG00000094346.1|predicted gene, 21746
mm10_v2_chr14_+_58070547_58070547	0.604935	Hoxa2	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr6_-_99044414_99044459	0.604647	Hoxa2	ENSMUST00000177507.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000123992.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr11_-_31671727_31671856	0.598109	Hoxa2	ENSMUST00000109415.1|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr4_-_83285141_83285169	0.596467	Hoxa2	ENSMUST00000150522.1|Ttc39b|ENSMUSG00000038172.8|tetratricopeptide repeat domain 39B
mm10_v2_chrX_+_96455359_96455411	0.593902	Hoxa2	ENSMUST00000033553.7|Heph|ENSMUSG00000031209.8|hephaestin
mm10_v2_chrM_+_7759_7927	0.592631	Hoxa2	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr11_-_68927049_68927101	0.592543	Hoxa2	ENSMUST00000038932.7|Odf4|ENSMUSG00000032921.7|outer dense fiber of sperm tails 4
mm10_v2_chr4_+_105790534_105790534	0.586912	Hoxa2	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chrX_-_73921828_73921916	0.585875	Hoxa2	ENSMUST00000096316.3|Naa10|ENSMUSG00000031388.8|N(alpha)-acetyltransferase 10, NatA catalytic subunit 	ENSMUST00000114390.1|Naa10|ENSMUSG00000031388.8|N(alpha)-acetyltransferase 10, NatA catalytic subunit 	ENSMUST00000114391.3|Naa10|ENSMUSG00000031388.8|N(alpha)-acetyltransferase 10, NatA catalytic subunit 	ENSMUST00000114387.1|Naa10|ENSMUSG00000031388.8|N(alpha)-acetyltransferase 10, NatA catalytic subunit
mm10_v2_chr15_-_89149557_89149650	0.585549	Hoxa2	ENSMUST00000088823.3|Mapk11|ENSMUSG00000053137.6|mitogen-activated protein kinase 11
mm10_v2_chr17_-_57105916_57105948	0.584361	Hoxa2	ENSMUST00000112915.2|Gm11110|ENSMUSG00000079414.2|predicted gene 11110
mm10_v2_chr19_-_4042165_4042242	0.584232	Hoxa2	ENSMUST00000042700.9|Gstp2|ENSMUSG00000038155.9|glutathione S-transferase, pi 2
mm10_v2_chr4_-_141606011_141606058	0.580972	Hoxa2	ENSMUST00000123150.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000133874.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000136831.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000130181.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105785.2|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr9_-_22117123_22117174	0.578084	Hoxa2	ENSMUST00000013966.6|Elof1|ENSMUSG00000013822.6|elongation factor 1 homolog (ELF1, S. cerevisiae)
mm10_v2_chr3_+_53488677_53488727	0.577273	Hoxa2	ENSMUST00000029307.3|Stoml3|ENSMUSG00000027744.3|stomatin (Epb7.2)-like 3
mm10_v2_chr12_-_104013640_104013658	0.575476	Hoxa2	ENSMUST00000058464.4|Serpina9|ENSMUSG00000058260.2|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
mm10_v2_chr16_+_90220742_90220771	0.568951	Hoxa2	ENSMUST00000023707.9|Sod1|ENSMUSG00000022982.9|superoxide dismutase 1, soluble
mm10_v2_chr3_+_95622236_95622278	0.564169	Hoxa2	ENSMUST00000074353.4|Rps10-ps1|ENSMUSG00000060438.4|ribosomal protein S10, pseudogene 1
mm10_v2_chr1_+_86587100_86587156	0.562154	Hoxa2	ENSMUST00000027446.4|Cops7b|ENSMUSG00000026240.6|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)
mm10_v2_chr6_-_83156393_83156400	0.561544	Hoxa2	ENSMUST00000153148.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54 	ENSMUST00000125894.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54
mm10_v2_chr1_+_85650044_85650052	0.559784	Hoxa2	ENSMUST00000066427.4|Sp100|ENSMUSG00000026222.10|nuclear antigen Sp100
mm10_v2_chr16_+_10411928_10411965	0.558751	Hoxa2	ENSMUST00000023146.4|Nubp1|ENSMUSG00000022503.4|nucleotide binding protein 1
mm10_v2_chr16_-_45693658_45693743	0.558064	Hoxa2	ENSMUST00000114562.2|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7 	ENSMUST00000036617.7|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7
mm10_v2_chr15_+_31224371_31224400	0.555634	Hoxa2	ENSMUST00000044524.9|Dap|ENSMUSG00000039168.9|death-associated protein
mm10_v2_chr2_-_155826647_155826766	0.554535	Hoxa2	ENSMUST00000109638.1|Eif6|ENSMUSG00000027613.9|eukaryotic translation initiation factor 6 	ENSMUST00000134278.1|Eif6|ENSMUSG00000027613.9|eukaryotic translation initiation factor 6
mm10_v2_chr11_-_100356078_100356096	0.551032	Hoxa2	ENSMUST00000103124.4|Hap1|ENSMUSG00000006930.9|huntingtin-associated protein 1
mm10_v2_chr4_+_156235999_156236051	0.550082	Hoxa2	ENSMUST00000179543.1|Noc2l|ENSMUSG00000095567.1|nucleolar complex associated 2 homolog (S. cerevisiae) 	ENSMUST00000179886.1|Noc2l|ENSMUSG00000095567.1|nucleolar complex associated 2 homolog (S. cerevisiae)
mm10_v2_chr15_-_83510861_83510906	0.548492	Hoxa2	ENSMUST00000109479.1|Ttll1|ENSMUSG00000022442.9|tubulin tyrosine ligase-like 1 	ENSMUST00000109480.1|Ttll1|ENSMUSG00000022442.9|tubulin tyrosine ligase-like 1 	ENSMUST00000016897.4|Ttll1|ENSMUSG00000022442.9|tubulin tyrosine ligase-like 1
mm10_v2_chr18_+_56572822_56572822	0.543843	Hoxa2	ENSMUST00000008445.5|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export
mm10_v2_chr11_-_98625661_98625661	0.541191	Hoxa2	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr7_+_104218787_104218826	0.53805	Hoxa2	ENSMUST00000098180.3|Trim6|ENSMUSG00000072244.3|tripartite motif-containing 6
mm10_v2_chr1_-_180813534_180813583	0.537832	Hoxa2	ENSMUST00000159789.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000081026.4|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr6_+_71909046_71909076	0.536055	Hoxa2	ENSMUST00000055296.8|Polr1a|ENSMUSG00000049553.9|polymerase (RNA) I polypeptide A
mm10_v2_chr2_+_156840966_156841017	0.52781	Hoxa2	ENSMUST00000109564.1|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr19_-_10869757_10869940	0.527528	Hoxa2	ENSMUST00000120524.1|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A 	ENSMUST00000025645.7|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A
mm10_v2_chr9_+_75441518_75441575	0.520019	Hoxa2	ENSMUST00000048937.4|Leo1|ENSMUSG00000042487.5|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr2_-_25224653_25224702	0.516417	Hoxa2	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chr12_-_16800886_16800931	0.511061	Hoxa2	ENSMUST00000161998.1|Greb1|ENSMUSG00000036523.10|gene regulated by estrogen in breast cancer protein
mm10_v2_chr9_-_44344159_44344228	0.510225	Hoxa2	ENSMUST00000077353.7|Hmbs|ENSMUSG00000032126.9|hydroxymethylbilane synthase
mm10_v2_chr11_+_62551676_62551735	0.503396	Hoxa2	ENSMUST00000136938.1|Ubb|ENSMUSG00000019505.7|ubiquitin B
mm10_v2_chrX_-_102157065_102157096	0.503237	Hoxa2	ENSMUST00000056904.2|Ercc6l|ENSMUSG00000051220.2|excision repair cross-complementing rodent repair deficiency complementation group 6 like
mm10_v2_chr11_+_75486813_75486866	0.501435	Hoxa2	ENSMUST00000018449.4|Prpf8|ENSMUSG00000020850.8|pre-mRNA processing factor 8 	ENSMUST00000102510.1|Prpf8|ENSMUSG00000020850.8|pre-mRNA processing factor 8 	ENSMUST00000131283.1|Prpf8|ENSMUSG00000020850.8|pre-mRNA processing factor 8
mm10_v2_chr9_-_14782964_14782964	0.501394	Hoxa2	ENSMUST00000034406.3|Ankrd49|ENSMUSG00000031931.3|ankyrin repeat domain 49
mm10_v2_chr1_-_119053619_119053638	0.501206	Hoxa2	ENSMUST00000062483.8|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr8_-_89187560_89187560	0.495046	Hoxa2	ENSMUST00000093326.2|Gm5356|ENSMUSG00000069962.2|predicted pseudogene 5356
mm10_v2_chr8_+_95825353_95825354	0.492134	Hoxa2	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr7_+_24587543_24587543	0.489002	Hoxa2	ENSMUST00000077191.6|Ethe1|ENSMUSG00000064254.6|ethylmalonic encephalopathy 1
mm10_v2_chr15_-_81045467_81045546	0.488095	Hoxa2	ENSMUST00000135047.1|Mkl1|ENSMUSG00000042292.10|MKL (megakaryoblastic leukemia)/myocardin-like 1
mm10_v2_chr17_+_66123520_66123582	0.483865	Hoxa2	ENSMUST00000163605.2|Ddx11|ENSMUSG00000035842.9|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
mm10_v2_chr3_+_89215192_89215243	0.483527	Hoxa2	ENSMUST00000142051.1|Thbs3|ENSMUSG00000028047.5|thrombospondin 3 	ENSMUST00000119084.1|Thbs3|ENSMUSG00000028047.5|thrombospondin 3
mm10_v2_chr7_+_29238434_29238456	0.482581	Hoxa2	ENSMUST00000108237.1|Yif1b|ENSMUSG00000030588.5|Yip1 interacting factor homolog B (S. cerevisiae)
mm10_v2_chr4_-_42581621_42581621	0.480886	Hoxa2	ENSMUST00000178742.1|Gm10592|ENSMUSG00000096260.1|predicted gene 10592
mm10_v2_chr15_-_79505241_79505241	0.479658	Hoxa2	ENSMUST00000057801.6|Kcnj4|ENSMUSG00000044216.6|potassium inwardly-rectifying channel, subfamily J, member 4
mm10_v2_chr11_-_101417615_101417615	0.47765	Hoxa2	ENSMUST00000070395.8|Aarsd1|ENSMUSG00000075528.7|alanyl-tRNA synthetase domain containing 1
mm10_v2_chr15_+_39006272_39006365	0.472547	Hoxa2	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chr8_-_121829480_121829571	0.470573	Hoxa2	ENSMUST00000174717.1|Klhdc4|ENSMUSG00000040263.10|kelch domain containing 4 	ENSMUST00000174192.1|Klhdc4|ENSMUSG00000040263.10|kelch domain containing 4 	ENSMUST00000045884.10|Klhdc4|ENSMUSG00000040263.10|kelch domain containing 4
mm10_v2_chr10_-_81349085_81349240	0.469308	Hoxa2	ENSMUST00000141171.1|Hmg20b|ENSMUSG00000020232.11|high mobility group 20B
mm10_v2_chr15_-_84447037_84447097	0.466842	Hoxa2	ENSMUST00000080751.2|1810041L15Rik|ENSMUSG00000062760.4|RIKEN cDNA 1810041L15 gene
mm10_v2_chr2_-_152831665_152831735	0.466018	Hoxa2	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr7_+_116093336_116093372	0.457235	Hoxa2	ENSMUST00000106608.1|1110004F10Rik|ENSMUSG00000030663.6|RIKEN cDNA 1110004F10 gene 	ENSMUST00000106607.1|1110004F10Rik|ENSMUSG00000030663.6|RIKEN cDNA 1110004F10 gene
mm10_v2_chr2_+_174285256_174285284	0.45712	Hoxa2	ENSMUST00000130940.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr5_-_114128171_114128219	0.453173	Hoxa2	ENSMUST00000053657.6|Alkbh2|ENSMUSG00000044339.6|alkB, alkylation repair homolog 2 (E. coli) 	ENSMUST00000112279.1|Alkbh2|ENSMUSG00000044339.6|alkB, alkylation repair homolog 2 (E. coli)
mm10_v2_chr2_-_73625731_73625744	0.451337	Hoxa2	ENSMUST00000070579.6|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr10_-_96409038_96409038	0.450876	Hoxa2	ENSMUST00000179683.1|Gm20091|ENSMUSG00000094249.1|predicted gene, 20091
mm10_v2_chr5_+_136953246_136953406	0.448567	Hoxa2	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chr9_+_75037744_75037755	0.447845	Hoxa2	ENSMUST00000168301.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr14_-_7483762_7483762	0.447708	Hoxa2	ENSMUST00000164366.1|Gm3752|ENSMUSG00000091617.2|predicted gene 3752
mm10_v2_chr14_+_103650208_103650243	0.446717	Hoxa2	ENSMUST00000069443.7|Slain1|ENSMUSG00000055717.7|SLAIN motif family, member 1
mm10_v2_chr5_+_145140362_145140415	0.446357	Hoxa2	ENSMUST00000162594.1|Bud31|ENSMUSG00000038722.11|BUD31 homolog (yeast) 	ENSMUST00000162308.1|Bud31|ENSMUSG00000038722.11|BUD31 homolog (yeast) 	ENSMUST00000159018.1|Bud31|ENSMUSG00000038722.11|BUD31 homolog (yeast) 	ENSMUST00000160075.1|Bud31|ENSMUSG00000038722.11|BUD31 homolog (yeast)
mm10_v2_chr2_+_30845059_30845059	0.444044	Hoxa2	ENSMUST00000041659.5|Prrx2|ENSMUSG00000039476.7|paired related homeobox 2
mm10_v2_chr15_+_52712434_52712477	0.442494	Hoxa2	ENSMUST00000037115.7|Med30|ENSMUSG00000038622.7|mediator complex subunit 30
mm10_v2_chrX_+_56779699_56779819	0.442235	Hoxa2	ENSMUST00000114772.2|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1 	ENSMUST00000114768.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1 	ENSMUST00000155882.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr8_-_123515333_123515437	0.438529	Hoxa2	ENSMUST00000177240.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr2_+_174285352_174285364	0.435952	Hoxa2	ENSMUST00000130761.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr2_-_101883010_101883023	0.434999	Hoxa2	ENSMUST00000154525.1|Prr5l|ENSMUSG00000032841.9|proline rich 5 like
mm10_v2_chr4_-_141606096_141606112	0.433235	Hoxa2	ENSMUST00000153189.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr10_-_109009055_109009111	0.432365	Hoxa2	ENSMUST00000156979.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr16_+_38346986_38347050	0.426929	Hoxa2	ENSMUST00000050273.8|Cox17|ENSMUSG00000046516.10|cytochrome c oxidase assembly protein 17 	ENSMUST00000120495.1|Cox17|ENSMUSG00000046516.10|cytochrome c oxidase assembly protein 17 	ENSMUST00000119704.1|Gm21987|ENSMUSG00000095464.1|predicted gene 21987
mm10_v2_chr8_+_95715901_95715932	0.42677	Hoxa2	ENSMUST00000034096.4|Setd6|ENSMUSG00000031671.4|SET domain containing 6
mm10_v2_chr8_-_123515455_123515498	0.426403	Hoxa2	ENSMUST00000176286.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000169210.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000074879.5|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000066198.7|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1 	ENSMUST00000176155.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr16_-_93603803_93603815	0.422932	Hoxa2	ENSMUST00000023669.5|Setd4|ENSMUSG00000022948.8|SET domain containing 4 	ENSMUST00000113951.2|Setd4|ENSMUSG00000022948.8|SET domain containing 4
mm10_v2_chr6_-_113501818_113501949	0.420739	Hoxa2	ENSMUST00000101059.1|Prrt3|ENSMUSG00000045009.7|proline-rich transmembrane protein 3
mm10_v2_chr2_-_121271403_121271410	0.418814	Hoxa2	ENSMUST00000110648.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr6_+_113604749_113604772	0.414963	Hoxa2	ENSMUST00000035725.5|Brk1|ENSMUSG00000033940.7|BRICK1, SCAR/WAVE actin-nucleating complex subunit
mm10_v2_chr15_+_102977032_102977032	0.414807	Hoxa2	ENSMUST00000001706.6|Hoxc9|ENSMUSG00000036139.6|homeobox C9
mm10_v2_chr5_+_122354369_122354455	0.411972	Hoxa2	ENSMUST00000155671.1|Vps29|ENSMUSG00000029462.12|vacuolar protein sorting 29 (S. pombe) 	ENSMUST00000118830.1|Vps29|ENSMUSG00000029462.12|vacuolar protein sorting 29 (S. pombe) 	ENSMUST00000117868.1|Vps29|ENSMUSG00000029462.12|vacuolar protein sorting 29 (S. pombe) 	ENSMUST00000118765.1|Vps29|ENSMUSG00000029462.12|vacuolar protein sorting 29 (S. pombe) 	ENSMUST00000145821.1|Vps29|ENSMUSG00000029462.12|vacuolar protein sorting 29 (S. pombe)
mm10_v2_chr7_+_30751471_30751562	0.410632	Hoxa2	ENSMUST00000182229.1|Sbsn|ENSMUSG00000046056.8|suprabasin 	ENSMUST00000182227.1|Sbsn|ENSMUSG00000046056.8|suprabasin 	ENSMUST00000080518.6|Sbsn|ENSMUSG00000046056.8|suprabasin 	ENSMUST00000182721.1|Sbsn|ENSMUSG00000046056.8|suprabasin
mm10_v2_chr11_+_119913423_119913441	0.407219	Hoxa2	ENSMUST00000132197.1|Chmp6|ENSMUSG00000025371.6|charged multivesicular body protein 6
mm10_v2_chr1_-_79671966_79671993	0.406879	Hoxa2	ENSMUST00000162342.1|Ap1s3|ENSMUSG00000054702.8|adaptor-related protein complex AP-1, sigma 3
mm10_v2_chr2_-_174346712_174346712	0.404408	Hoxa2	ENSMUST00000168292.1|Gm20721|ENSMUSG00000090625.1|predicted gene, 20721
mm10_v2_chr1_+_171271627_171271640	0.400334	Hoxa2	ENSMUST00000141114.1|B4galt3|ENSMUSG00000052423.8|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
mm10_v2_chr1_+_134560190_134560213	0.399955	Hoxa2	ENSMUST00000112198.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B 	ENSMUST00000112197.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B
mm10_v2_chrX_-_73265390_73265390	0.398403	Hoxa2	ENSMUST00000080839.1|Xlr3c|ENSMUSG00000058147.1|X-linked lymphocyte-regulated 3C
mm10_v2_chr6_-_24527546_24527585	0.398333	Hoxa2	ENSMUST00000118558.1|Ndufa5|ENSMUSG00000023089.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
mm10_v2_chr3_-_119783262_119783388	0.396138	Hoxa2	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr15_-_100425050_100425075	0.395974	Hoxa2	ENSMUST00000123461.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr16_+_44347121_44347121	0.394579	Hoxa2	ENSMUST00000050897.6|Spice1|ENSMUSG00000043065.6|spindle and centriole associated protein 1
mm10_v2_chr15_-_83510793_83510859	0.392034	Hoxa2	ENSMUST00000154401.1|Ttll1|ENSMUSG00000022442.9|tubulin tyrosine ligase-like 1
mm10_v2_chr8_-_4779513_4779591	0.388791	Hoxa2	ENSMUST00000022945.7|Shcbp1|ENSMUSG00000022322.7|Shc SH2-domain binding protein 1
mm10_v2_chr15_-_35938186_35938246	0.387893	Hoxa2	ENSMUST00000014457.8|Cox6c|ENSMUSG00000014313.8|cytochrome c oxidase subunit VIc
mm10_v2_chr17_+_80290206_80290279	0.386956	Hoxa2	ENSMUST00000061703.9|Morn2|ENSMUSG00000045257.9|MORN repeat containing 2
mm10_v2_chr14_-_122913085_122913190	0.384205	Hoxa2	ENSMUST00000162164.1|Ggact|ENSMUSG00000041625.8|gamma-glutamylamine cyclotransferase 	ENSMUST00000110679.2|Ggact|ENSMUSG00000041625.8|gamma-glutamylamine cyclotransferase 	ENSMUST00000038075.5|Ggact|ENSMUSG00000041625.8|gamma-glutamylamine cyclotransferase
mm10_v2_chr7_+_140125651_140125727	0.383297	Hoxa2	ENSMUST00000026537.5|Paox|ENSMUSG00000025464.8|polyamine oxidase (exo-N4-amino) 	ENSMUST00000097967.3|Paox|ENSMUSG00000025464.8|polyamine oxidase (exo-N4-amino)
mm10_v2_chr11_+_6560183_6560240	0.38109	Hoxa2	ENSMUST00000109722.2|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr2_-_160619971_160619971	0.380559	Hoxa2	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr3_+_89215170_89215181	0.379726	Hoxa2	ENSMUST00000029682.4|Thbs3|ENSMUSG00000028047.5|thrombospondin 3
mm10_v2_chr9_+_75037809_75037820	0.379385	Hoxa2	ENSMUST00000167885.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr14_-_61037937_61037998	0.37776	Hoxa2	ENSMUST00000111236.2|Tnfrsf19|ENSMUSG00000060548.6|tumor necrosis factor receptor superfamily, member 19
mm10_v2_chr19_-_30549516_30549665	0.377735	Hoxa2	ENSMUST00000025803.8|Dkk1|ENSMUSG00000024868.8|dickkopf homolog 1 (Xenopus laevis)
mm10_v2_chrX_-_7898950_7899000	0.375996	Hoxa2	ENSMUST00000115655.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1 	ENSMUST00000156741.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr7_+_116093296_116093329	0.374525	Hoxa2	ENSMUST00000032899.5|1110004F10Rik|ENSMUSG00000030663.6|RIKEN cDNA 1110004F10 gene
mm10_v2_chr14_-_54409469_54409477	0.371244	Hoxa2	ENSMUST00000000984.4|Slc7a7|ENSMUSG00000000958.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm10_v2_chr5_+_115011111_115011208	0.370146	Hoxa2	ENSMUST00000031530.5|Sppl3|ENSMUSG00000029550.8|signal peptide peptidase 3
mm10_v2_chr7_-_78847206_78847255	0.369074	Hoxa2	ENSMUST00000032839.6|Det1|ENSMUSG00000030610.7|de-etiolated homolog 1 (Arabidopsis)
mm10_v2_chr2_-_121271341_121271397	0.366525	Hoxa2	ENSMUST00000110647.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr17_-_24724374_24724478	0.364999	Hoxa2	ENSMUST00000135708.1|Ndufb10|ENSMUSG00000040048.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 	ENSMUST00000045602.8|Ndufb10|ENSMUSG00000040048.8|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10
mm10_v2_chr4_-_155010984_155011026	0.364995	Hoxa2	ENSMUST00000105631.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2 	ENSMUST00000139976.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2 	ENSMUST00000145662.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr11_-_78984946_78984957	0.362226	Hoxa2	ENSMUST00000108268.3|Lgals9|ENSMUSG00000001123.9|lectin, galactose binding, soluble 9
mm10_v2_chr3_-_58525867_58525873	0.362211	Hoxa2	ENSMUST00000029385.7|Serp1|ENSMUSG00000027808.7|stress-associated endoplasmic reticulum protein 1
mm10_v2_chr14_+_55015454_55015571	0.356757	Hoxa2	ENSMUST00000022815.8|Ngdn|ENSMUSG00000022204.8|neuroguidin, EIF4E binding protein
mm10_v2_chr9_+_46998931_46998931	0.354973	Hoxa2	ENSMUST00000178065.1|Gm4791|ENSMUSG00000094893.1|predicted gene 4791
mm10_v2_chr7_+_17203469_17203485	0.352025	Hoxa2	ENSMUST00000075934.5|Psg29|ENSMUSG00000023159.7|pregnancy-specific glycoprotein 29
mm10_v2_chr17_-_6317474_6317517	0.351452	Hoxa2	ENSMUST00000169415.1|Dynlt1a|ENSMUSG00000092074.1|dynein light chain Tctex-type 1A
mm10_v2_chr12_-_27160311_27160476	0.350435	Hoxa2	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr6_+_14901440_14901497	0.348807	Hoxa2	ENSMUST00000128567.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr8_-_70897407_70897443	0.346873	Hoxa2	ENSMUST00000054220.8|Rpl18a|ENSMUSG00000045128.8|ribosomal protein L18A
mm10_v2_chr2_+_121358591_121358713	0.341375	Hoxa2	ENSMUST00000000317.6|Ckmt1|ENSMUSG00000000308.8|creatine kinase, mitochondrial 1, ubiquitous 	ENSMUST00000129130.1|Ckmt1|ENSMUSG00000000308.8|creatine kinase, mitochondrial 1, ubiquitous
mm10_v2_chr11_-_54956047_54956122	0.341216	Hoxa2	ENSMUST00000155316.1|Tnip1|ENSMUSG00000020400.11|TNFAIP3 interacting protein 1 	ENSMUST00000108889.3|Tnip1|ENSMUSG00000020400.11|TNFAIP3 interacting protein 1 	ENSMUST00000126703.1|Tnip1|ENSMUSG00000020400.11|TNFAIP3 interacting protein 1
mm10_v2_chr8_-_46211284_46211284	0.335673	Hoxa2	ENSMUST00000034049.4|Slc25a4|ENSMUSG00000031633.4|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm10_v2_chr12_-_20900867_20900867	0.334929	Hoxa2	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr2_-_60963192_60963251	0.334508	Hoxa2	ENSMUST00000028347.6|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr7_-_128596278_128596278	0.333877	Hoxa2	ENSMUST00000179317.1|Gm7258|ENSMUSG00000096557.1|predicted gene 7258
mm10_v2_chr4_+_57845240_57845265	0.332916	Hoxa2	ENSMUST00000102903.1|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2 	ENSMUST00000107598.3|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2
mm10_v2_chr7_+_103550368_103550368	0.33222	Hoxa2	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr6_+_86628174_86628208	0.330268	Hoxa2	ENSMUST00000043400.6|Asprv1|ENSMUSG00000033508.6|aspartic peptidase, retroviral-like 1
mm10_v2_chr14_+_3224440_3224440	0.327136	Hoxa2	ENSMUST00000112797.4|D830030K20Rik|ENSMUSG00000096039.1|RIKEN cDNA D830030K20 gene
mm10_v2_chr11_-_78984831_78984924	0.326013	Hoxa2	ENSMUST00000073001.4|Lgals9|ENSMUSG00000001123.9|lectin, galactose binding, soluble 9 	ENSMUST00000108269.3|Lgals9|ENSMUSG00000001123.9|lectin, galactose binding, soluble 9
mm10_v2_chr9_+_110656494_110656544	0.325835	Hoxa2	ENSMUST00000019803.4|Ccdc12|ENSMUSG00000019659.4|coiled-coil domain containing 12
mm10_v2_chr7_-_13038201_13038307	0.324074	Hoxa2	ENSMUST00000005714.7|Ube2m|ENSMUSG00000005575.9|ubiquitin-conjugating enzyme E2M 	ENSMUST00000156389.1|Ube2m|ENSMUSG00000005575.9|ubiquitin-conjugating enzyme E2M 	ENSMUST00000165394.2|Ube2m|ENSMUSG00000005575.9|ubiquitin-conjugating enzyme E2M
mm10_v2_chr8_-_84840627_84840681	0.321394	Hoxa2	ENSMUST00000003911.6|Rad23a|ENSMUSG00000003813.9|RAD23a homolog (S. cerevisiae) 	ENSMUST00000109761.2|Rad23a|ENSMUSG00000003813.9|RAD23a homolog (S. cerevisiae) 	ENSMUST00000128035.1|Rad23a|ENSMUSG00000003813.9|RAD23a homolog (S. cerevisiae)
mm10_v2_chr2_-_69206133_69206144	0.317991	Hoxa2	ENSMUST00000112320.1|Spc25|ENSMUSG00000005233.10|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm10_v2_chr10_+_4611971_4612021	0.316915	Hoxa2	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr5_+_30869579_30869620	0.316159	Hoxa2	ENSMUST00000046349.7|Tmem214|ENSMUSG00000038828.7|transmembrane protein 214
mm10_v2_chr2_-_69206146_69206194	0.314647	Hoxa2	ENSMUST00000127243.1|Spc25|ENSMUSG00000005233.10|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) 	ENSMUST00000149643.1|Spc25|ENSMUSG00000005233.10|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) 	ENSMUST00000167875.2|Spc25|ENSMUSG00000005233.10|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) 	ENSMUST00000005365.8|Spc25|ENSMUSG00000005233.10|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm10_v2_chr13_-_41847626_41847684	0.314014	Hoxa2	ENSMUST00000121404.1|Adtrp|ENSMUSG00000058022.7|androgen dependent TFPI regulating protein
mm10_v2_chr1_-_180813591_180813632	0.313988	Hoxa2	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr9_+_108936648_108936715	0.30865	Hoxa2	ENSMUST00000026743.8|Uqcrc1|ENSMUSG00000025651.9|ubiquinol-cytochrome c reductase core protein 1
mm10_v2_chr4_+_123183456_123183601	0.307725	Hoxa2	ENSMUST00000126995.1|Hpcal4|ENSMUSG00000046093.3|hippocalcin-like 4
mm10_v2_chr6_-_86684510_86684529	0.304655	Hoxa2	ENSMUST00000001186.4|Snrnp27|ENSMUSG00000001158.7|small nuclear ribonucleoprotein 27 (U4/U6.U5) 	ENSMUST00000113683.1|Snrnp27|ENSMUSG00000001158.7|small nuclear ribonucleoprotein 27 (U4/U6.U5)
mm10_v2_chr4_+_95557494_95557544	0.303293	Hoxa2	ENSMUST00000079223.4|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000177394.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chr5_+_31613939_31613944	0.302084	Hoxa2	ENSMUST00000031024.7|Mrpl33|ENSMUSG00000029142.8|mitochondrial ribosomal protein L33
mm10_v2_chr6_+_11925869_11925941	0.302044	Hoxa2	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr7_+_141468776_141468807	0.298728	Hoxa2	ENSMUST00000058746.5|Cd151|ENSMUSG00000025510.7|CD151 antigen
mm10_v2_chr14_+_73142490_73142564	0.297546	Hoxa2	ENSMUST00000170370.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000164822.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000165429.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr9_+_75037614_75037701	0.292682	Hoxa2	ENSMUST00000168166.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000169492.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000170308.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr11_+_72607221_72607307	0.292051	Hoxa2	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr1_-_10038106_10038169	0.291548	Hoxa2	ENSMUST00000027050.3|Cops5|ENSMUSG00000025917.3|COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)
mm10_v2_chr9_+_122923050_122923099	0.289702	Hoxa2	ENSMUST00000051667.7|Zfp105|ENSMUSG00000057895.5|zinc finger protein 105 	ENSMUST00000148851.1|Zfp105|ENSMUSG00000057895.5|zinc finger protein 105
mm10_v2_chr4_-_35157404_35157500	0.285095	Hoxa2	ENSMUST00000102975.3|Mob3b|ENSMUSG00000073910.4|MOB kinase activator 3B
mm10_v2_chr11_-_120991039_120991092	0.284899	Hoxa2	ENSMUST00000070575.7|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr7_-_133122615_133122762	0.283856	Hoxa2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr17_-_15041457_15041559	0.282476	Hoxa2	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr18_+_76930017_76930101	0.28191	Hoxa2	ENSMUST00000026487.4|Ier3ip1|ENSMUSG00000090000.1|immediate early response 3 interacting protein 1
mm10_v2_chr11_+_21239279_21239302	0.281721	Hoxa2	ENSMUST00000006221.7|Vps54|ENSMUSG00000020128.9|vacuolar protein sorting 54 (yeast) 	ENSMUST00000109578.1|Vps54|ENSMUSG00000020128.9|vacuolar protein sorting 54 (yeast)
mm10_v2_chr4_-_94603239_94603253	0.280689	Hoxa2	ENSMUST00000107107.2|Plaa|ENSMUSG00000028577.7|phospholipase A2, activating protein
mm10_v2_chrX_-_7898864_7898912	0.280602	Hoxa2	ENSMUST00000154552.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr13_-_63398167_63398261	0.280069	Hoxa2	ENSMUST00000160735.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr11_+_102041509_102041531	0.279607	Hoxa2	ENSMUST00000123895.1|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000017453.5|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000107163.2|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000107164.2|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G
mm10_v2_chr3_+_96181151_96181167	0.279502	Hoxa2	ENSMUST00000035371.8|Sv2a|ENSMUSG00000038486.8|synaptic vesicle glycoprotein 2 a
mm10_v2_chr10_+_80172934_80172961	0.273504	Hoxa2	ENSMUST00000041882.6|1600002K03Rik|ENSMUSG00000035595.6|RIKEN cDNA 1600002K03 gene
mm10_v2_chr9_-_31131817_31131853	0.273499	Hoxa2	ENSMUST00000034478.2|St14|ENSMUSG00000031995.2|suppression of tumorigenicity 14 (colon carcinoma)
mm10_v2_chr17_-_6655939_6655939	0.269685	Hoxa2	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr6_+_108828633_108828721	0.269587	Hoxa2	ENSMUST00000089162.3|Edem1|ENSMUSG00000030104.7|ER degradation enhancer, mannosidase alpha-like 1
mm10_v2_chr12_-_32061221_32061301	0.267665	Hoxa2	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chr1_+_164048214_164048234	0.26718	Hoxa2	ENSMUST00000027874.5|Sele|ENSMUSG00000026582.6|selectin, endothelial cell
mm10_v2_chr9_+_92309362_92309386	0.266745	Hoxa2	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr7_-_116084635_116084635	0.266519	Hoxa2	ENSMUST00000111755.3|Gm4353|ENSMUSG00000091900.2|predicted gene 4353
mm10_v2_chr19_+_4000580_4000659	0.265777	Hoxa2	ENSMUST00000025802.3|Nudt8|ENSMUSG00000024869.3|nudix (nucleoside diphosphate linked moiety X)-type motif 8 	ENSMUST00000122924.1|Nudt8|ENSMUSG00000024869.3|nudix (nucleoside diphosphate linked moiety X)-type motif 8
mm10_v2_chr11_-_101119814_101119849	0.265277	Hoxa2	ENSMUST00000107295.3|Fam134c|ENSMUSG00000017802.8|family with sequence similarity 134, member C
mm10_v2_chr15_-_20666750_20666780	0.26383	Hoxa2	ENSMUST00000052910.4|Acot10|ENSMUSG00000047565.4|acyl-CoA thioesterase 10
mm10_v2_chr16_+_90386382_90386454	0.2607	Hoxa2	ENSMUST00000065856.6|Hunk|ENSMUSG00000053414.7|hormonally upregulated Neu-associated kinase
mm10_v2_chr1_+_53313636_53313682	0.260459	Hoxa2	ENSMUST00000114484.1|Osgepl1|ENSMUSG00000026096.8|O-sialoglycoprotein endopeptidase-like 1
mm10_v2_chrX_-_104671048_104671071	0.258309	Hoxa2	ENSMUST00000042070.5|Zdhhc15|ENSMUSG00000033906.5|zinc finger, DHHC domain containing 15
mm10_v2_chr2_-_121271315_121271322	0.257642	Hoxa2	ENSMUST00000131245.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr5_+_29735688_29735737	0.257541	Hoxa2	ENSMUST00000008733.8|Dnajb6|ENSMUSG00000029131.8|DnaJ (Hsp40) homolog, subfamily B, member 6
mm10_v2_chr1_+_143739573_143739642	0.257295	Hoxa2	ENSMUST00000111957.3|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase) 	ENSMUST00000145571.1|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr10_-_63421739_63421739	0.255221	Hoxa2	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chrX_+_38600626_38600691	0.253048	Hoxa2	ENSMUST00000000365.2|Mcts1|ENSMUSG00000000355.7|malignant T cell amplified sequence 1
mm10_v2_chr7_-_132786914_132786941	0.250032	Hoxa2	ENSMUST00000065371.7|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B 	ENSMUST00000106166.1|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr13_+_23575753_23575773	0.245715	Hoxa2	ENSMUST00000105105.1|Hist1h3d|ENSMUSG00000062808.4|histone cluster 1, H3d
mm10_v2_chr15_-_35938009_35938178	0.244969	Hoxa2	ENSMUST00000156915.1|Cox6c|ENSMUSG00000014313.8|cytochrome c oxidase subunit VIc
mm10_v2_chrM_-_14060_14074	0.242176	Hoxa2	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr3_-_153912966_153912990	0.241415	Hoxa2	ENSMUST00000089950.4|Rabggtb|ENSMUSG00000038975.8|RAB geranylgeranyl transferase, b subunit
mm10_v2_chr17_+_87078255_87078267	0.238466	Hoxa2	ENSMUST00000090731.5|Gm5499|ENSMUSG00000071035.4|predicted pseudogene 5499
mm10_v2_chr17_+_30485511_30485511	0.237925	Hoxa2	ENSMUST00000064223.1|Gm9874|ENSMUSG00000052388.1|predicted gene 9874
mm10_v2_chr3_+_88835231_88835231	0.237613	Hoxa2	ENSMUST00000107498.2|Gon4l|ENSMUSG00000054199.10|gon-4-like (C.elegans)
mm10_v2_chr14_+_3846245_3846245	0.230583	Hoxa2	ENSMUST00000180934.1|Gm3033|ENSMUSG00000093887.2|predicted gene 3033
mm10_v2_chr9_+_75037838_75037917	0.22904	Hoxa2	ENSMUST00000169188.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr9_+_121710389_121710422	0.228471	Hoxa2	ENSMUST00000035113.9|Deb1|ENSMUSG00000032526.10|differentially expressed in B16F10 1
mm10_v2_chr5_+_119834663_119834663	0.228087	Hoxa2	ENSMUST00000018407.6|Tbx5|ENSMUSG00000018263.8|T-box 5
mm10_v2_chr2_+_156475844_156475883	0.221512	Hoxa2	ENSMUST00000103135.1|Epb4.1l1|ENSMUSG00000027624.11|erythrocyte protein band 4.1-like 1
mm10_v2_chr10_-_13868932_13869004	0.221337	Hoxa2	ENSMUST00000019942.5|Aig1|ENSMUSG00000019806.7|androgen-induced 1 	ENSMUST00000162610.1|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr10_+_57486354_57486414	0.216432	Hoxa2	ENSMUST00000079833.4|Hsf2|ENSMUSG00000019878.7|heat shock factor 2
mm10_v2_chr11_-_116581446_116581472	0.212137	Hoxa2	ENSMUST00000082152.4|Ube2o|ENSMUSG00000020802.8|ubiquitin-conjugating enzyme E2O
mm10_v2_chr1_+_53313622_53313635	0.207171	Hoxa2	ENSMUST00000027265.3|Osgepl1|ENSMUSG00000026096.8|O-sialoglycoprotein endopeptidase-like 1
mm10_v2_chr9_+_122951051_122951106	0.206172	Hoxa2	ENSMUST00000040717.5|Kif15|ENSMUSG00000036768.5|kinesin family member 15
mm10_v2_chr9_-_103202113_103202137	0.202676	Hoxa2	ENSMUST00000035157.8|Srprb|ENSMUSG00000032553.8|signal recognition particle receptor, B subunit
mm10_v2_chr13_-_107414742_107414767	0.201281	Hoxa2	ENSMUST00000061241.6|Apoo-ps|ENSMUSG00000049233.6|apolipoprotein O, pseudogene
mm10_v2_chr16_+_35983307_35983395	0.200956	Hoxa2	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr11_+_29692937_29692997	0.200812	Hoxa2	ENSMUST00000102843.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000102842.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000078830.4|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000170731.1|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr11_+_115933282_115933282	0.198518	Hoxa2	ENSMUST00000140991.1|Sap30bp|ENSMUSG00000020755.3|SAP30 binding protein
mm10_v2_chr10_-_30600662_30600749	0.197821	Hoxa2	ENSMUST00000019927.6|Trmt11|ENSMUSG00000019792.7|tRNA methyltransferase 11
mm10_v2_chr4_-_47057296_47057356	0.197707	Hoxa2	ENSMUST00000107747.1|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6 	ENSMUST00000084616.2|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6
mm10_v2_chr18_+_34777008_34777075	0.197658	Hoxa2	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr12_+_17348422_17348526	0.19536	Hoxa2	ENSMUST00000046011.10|Nol10|ENSMUSG00000061458.8|nucleolar protein 10
mm10_v2_chr5_+_130079370_130079448	0.19243	Hoxa2	ENSMUST00000040721.8|Tpst1|ENSMUSG00000034118.9|protein-tyrosine sulfotransferase 1
mm10_v2_chr3_-_107943390_107943421	0.182064	Hoxa2	ENSMUST00000106681.1|Gstm6|ENSMUSG00000068762.5|glutathione S-transferase, mu 6
mm10_v2_chr12_-_103443653_103443680	0.181674	Hoxa2	ENSMUST00000055071.8|Ifi27l2a|ENSMUSG00000079017.3|interferon, alpha-inducible protein 27 like 2A
mm10_v2_chr1_-_38898084_38898177	0.175888	Hoxa2	ENSMUST00000027249.6|Chst10|ENSMUSG00000026080.8|carbohydrate sulfotransferase 10
mm10_v2_chr1_-_45503282_45503282	0.173304	Hoxa2	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr11_-_120991305_120991339	0.172676	Hoxa2	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr13_+_4233730_4233758	0.171398	Hoxa2	ENSMUST00000081326.6|Akr1c19|ENSMUSG00000071551.6|aldo-keto reductase family 1, member C19
mm10_v2_chr11_-_101119889_101119900	0.171307	Hoxa2	ENSMUST00000017946.5|Fam134c|ENSMUSG00000017802.8|family with sequence similarity 134, member C
mm10_v2_chr7_+_16816299_16816361	0.16674	Hoxa2	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chrX_+_73214333_73214432	0.165468	Hoxa2	ENSMUST00000156188.1|Xlr4b|ENSMUSG00000067768.6|X-linked lymphocyte-regulated 4B 	ENSMUST00000069077.3|Xlr4b|ENSMUSG00000067768.6|X-linked lymphocyte-regulated 4B 	ENSMUST00000069103.4|Xlr4b|ENSMUSG00000067768.6|X-linked lymphocyte-regulated 4B 	ENSMUST00000114506.1|Xlr4b|ENSMUSG00000067768.6|X-linked lymphocyte-regulated 4B 	ENSMUST00000081827.3|Xlr4b|ENSMUSG00000067768.6|X-linked lymphocyte-regulated 4B
mm10_v2_chr5_+_143548700_143548756	0.165356	Hoxa2	ENSMUST00000169329.1|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000067145.5|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000119488.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A 	ENSMUST00000118121.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A
mm10_v2_chr2_+_181763315_181763335	0.164885	Hoxa2	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr17_+_24426676_24426701	0.164776	Hoxa2	ENSMUST00000024946.5|Eci1|ENSMUSG00000024132.5|enoyl-Coenzyme A delta isomerase 1
mm10_v2_chr15_+_78428650_78428671	0.163727	Hoxa2	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr4_+_145510759_145510791	0.162253	Hoxa2	ENSMUST00000105742.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225 	ENSMUST00000136309.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr10_-_88605017_88605152	0.16149	Hoxa2	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr1_-_175688353_175688353	0.16134	Hoxa2	ENSMUST00000104984.1|Chml|ENSMUSG00000078185.1|choroideremia-like
mm10_v2_chr9_-_67043869_67043945	0.157902	Hoxa2	ENSMUST00000113696.1|Tpm1|ENSMUSG00000032366.9|tropomyosin 1, alpha
mm10_v2_chr1_+_143739016_143739050	0.154827	Hoxa2	ENSMUST00000145969.1|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr17_+_37193889_37193897	0.153174	Hoxa2	ENSMUST00000038844.6|Ubd|ENSMUSG00000035186.6|ubiquitin D
mm10_v2_chr7_-_43505926_43505944	0.150573	Hoxa2	ENSMUST00000013497.1|4931406B18Rik|ENSMUSG00000013353.4|RIKEN cDNA 4931406B18 gene 	ENSMUST00000163619.1|4931406B18Rik|ENSMUSG00000013353.4|RIKEN cDNA 4931406B18 gene
mm10_v2_chr8_-_67818218_67818269	0.149092	Hoxa2	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr6_+_88084473_88084527	0.147063	Hoxa2	ENSMUST00000032143.6|Rpn1|ENSMUSG00000030062.6|ribophorin I
mm10_v2_chr9_+_119444923_119444982	0.146922	Hoxa2	ENSMUST00000035094.6|Exog|ENSMUSG00000042787.7|endo/exonuclease (5'-3'), endonuclease G-like 	ENSMUST00000164213.2|Exog|ENSMUSG00000042787.7|endo/exonuclease (5'-3'), endonuclease G-like
mm10_v2_chr1_+_75435930_75435992	0.145478	Hoxa2	ENSMUST00000037796.7|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A 	ENSMUST00000113584.1|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A 	ENSMUST00000145166.1|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A 	ENSMUST00000143730.1|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A 	ENSMUST00000133418.1|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A 	ENSMUST00000144874.1|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A 	ENSMUST00000140287.1|Gmppa|ENSMUSG00000033021.10|GDP-mannose pyrophosphorylase A
mm10_v2_chr1_+_143739551_143739566	0.136459	Hoxa2	ENSMUST00000050491.9|Glrx2|ENSMUSG00000018196.12|glutaredoxin 2 (thioltransferase)
mm10_v2_chr7_+_81858993_81859010	0.136286	Hoxa2	ENSMUST00000041890.1|Tm6sf1|ENSMUSG00000038623.3|transmembrane 6 superfamily member 1
mm10_v2_chr3_-_130060850_130060907	0.135966	Hoxa2	ENSMUST00000001079.8|Sec24b|ENSMUSG00000001052.9|Sec24 related gene family, member B (S. cerevisiae)
mm10_v2_chr2_+_156475803_156475837	0.135684	Hoxa2	ENSMUST00000029155.8|Epb4.1l1|ENSMUSG00000027624.11|erythrocyte protein band 4.1-like 1
mm10_v2_chr12_+_14494561_14494561	0.133535	Hoxa2	ENSMUST00000052528.3|Gm9847|ENSMUSG00000050974.3|predicted pseudogene 9847
mm10_v2_chr9_+_113930934_113930987	0.133492	Hoxa2	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr12_-_3357012_3357153	0.132227	Hoxa2	ENSMUST00000180719.1|Gm26520|ENSMUSG00000097429.1|predicted gene, 26520
mm10_v2_chr7_+_141228766_141228813	0.131524	Hoxa2	ENSMUST00000106027.2|Phrf1|ENSMUSG00000038611.10|PHD and ring finger domains 1
mm10_v2_chr5_+_76140700_76140730	0.130092	Hoxa2	ENSMUST00000152642.1|Srd5a3|ENSMUSG00000029233.9|steroid 5 alpha-reductase 3 	ENSMUST00000127278.1|Srd5a3|ENSMUSG00000029233.9|steroid 5 alpha-reductase 3
mm10_v2_chr7_+_143823135_143823167	0.129221	Hoxa2	ENSMUST00000128454.1|Dhcr7|ENSMUSG00000058454.8|7-dehydrocholesterol reductase 	ENSMUST00000073878.5|Dhcr7|ENSMUSG00000058454.8|7-dehydrocholesterol reductase
mm10_v2_chr3_-_113574758_113574774	0.123743	Hoxa2	ENSMUST00000106540.1|Amy1|ENSMUSG00000074264.6|amylase 1, salivary
mm10_v2_chr3_-_96058446_96058466	0.121117	Hoxa2	ENSMUST00000015891.5|Vps45|ENSMUSG00000015747.5|vacuolar protein sorting 45 (yeast)
mm10_v2_chr8_-_105471481_105471526	0.119932	Hoxa2	ENSMUST00000014990.6|Tppp3|ENSMUSG00000014846.6|tubulin polymerization-promoting protein family member 3
mm10_v2_chr6_-_48708206_48708252	0.118283	Hoxa2	ENSMUST00000119315.1|Gimap6|ENSMUSG00000047867.5|GTPase, IMAP family member 6 	ENSMUST00000053661.4|Gimap6|ENSMUSG00000047867.5|GTPase, IMAP family member 6
mm10_v2_chr6_+_124304646_124304671	0.114077	Hoxa2	ENSMUST00000112541.2|Cd163|ENSMUSG00000008845.3|CD163 antigen 	ENSMUST00000032234.2|Cd163|ENSMUSG00000008845.3|CD163 antigen
mm10_v2_chr11_-_103938211_103938217	0.112808	Hoxa2	ENSMUST00000133774.2|Nsf|ENSMUSG00000034187.12|N-ethylmaleimide sensitive fusion protein 	ENSMUST00000149642.1|Nsf|ENSMUSG00000034187.12|N-ethylmaleimide sensitive fusion protein
mm10_v2_chr6_+_34709442_34709497	0.111592	Hoxa2	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr3_+_103739366_103739366	0.110346	Hoxa2	ENSMUST00000106852.1|Gm10964|ENSMUSG00000078620.1|predicted gene 10964
mm10_v2_chr18_+_9707639_9707661	0.109258	Hoxa2	ENSMUST00000040069.8|Colec12|ENSMUSG00000036103.8|collectin sub-family member 12
mm10_v2_chr10_-_128804353_128804374	0.108845	Hoxa2	ENSMUST00000051011.7|Tmem198b|ENSMUSG00000047090.7|transmembrane protein 198b
mm10_v2_chr10_-_81364846_81364859	0.106983	Hoxa2	ENSMUST00000131736.1|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr2_+_172440556_172440630	0.106754	Hoxa2	ENSMUST00000029005.3|Rtfdc1|ENSMUSG00000027502.5|replication termination factor 2 domain containing 1
mm10_v2_chr7_-_24587612_24587665	0.102719	Hoxa2	ENSMUST00000094705.2|Zfp575|ENSMUSG00000066721.3|zinc finger protein 575
mm10_v2_chr17_+_34135182_34135182	0.0992328	Hoxa2	ENSMUST00000042121.9|H2-DMa|ENSMUSG00000037649.9|histocompatibility 2, class II, locus DMa
mm10_v2_chr13_-_4609122_4609189	0.099209	Hoxa2	ENSMUST00000110691.3|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1 	ENSMUST00000091848.5|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1
mm10_v2_chr3_+_27317028_27317084	0.0927689	Hoxa2	ENSMUST00000046383.5|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10 	ENSMUST00000174840.1|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10
mm10_v2_chr12_+_9029982_9030012	0.0922701	Hoxa2	ENSMUST00000085741.1|Ttc32|ENSMUSG00000066637.1|tetratricopeptide repeat domain 32
mm10_v2_chr15_-_100495239_100495267	0.0917544	Hoxa2	ENSMUST00000061457.5|Csrnp2|ENSMUSG00000044636.5|cysteine-serine-rich nuclear protein 2
mm10_v2_chr9_+_75037712_75037737	0.091057	Hoxa2	ENSMUST00000007800.7|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chr7_+_70388305_70388305	0.0905801	Hoxa2	ENSMUST00000080024.5|B130024G19Rik|ENSMUSG00000062383.5|RIKEN cDNA B130024G19 gene
mm10_v2_chr11_-_103697898_103697948	0.0903196	Hoxa2	ENSMUST00000021329.7|Gosr2|ENSMUSG00000020946.7|golgi SNAP receptor complex member 2
mm10_v2_chr5_+_86804508_86804564	0.0895436	Hoxa2	ENSMUST00000038384.7|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr10_-_81025406_81025411	0.0892363	Hoxa2	ENSMUST00000055125.4|Diras1|ENSMUSG00000043670.4|DIRAS family, GTP-binding RAS-like 1
mm10_v2_chr10_+_18469958_18469981	0.0888144	Hoxa2	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr10_-_39895821_39895821	0.0886663	Hoxa2	ENSMUST00000178045.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chr18_-_40219324_40219399	0.0822552	Hoxa2	ENSMUST00000025364.4|Yipf5|ENSMUSG00000024487.4|Yip1 domain family, member 5
mm10_v2_chr17_+_29660595_29660706	0.0781885	Hoxa2	ENSMUST00000024816.6|Cmtr1|ENSMUSG00000024019.11|cap methyltransferase 1
mm10_v2_chr4_+_43441939_43441939	0.0755145	Hoxa2	ENSMUST00000060864.6|Tesk1|ENSMUSG00000028458.6|testis specific protein kinase 1
mm10_v2_chr4_-_12171970_12172024	0.0733814	Hoxa2	ENSMUST00000087052.4|Fam92a|ENSMUSG00000028218.13|family with sequence similarity 92, member A 	ENSMUST00000108285.2|Fam92a|ENSMUSG00000028218.13|family with sequence similarity 92, member A 	ENSMUST00000177837.1|Fam92a|ENSMUSG00000028218.13|family with sequence similarity 92, member A
mm10_v2_chr7_-_100583072_100583124	0.0729312	Hoxa2	ENSMUST00000152876.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48 	ENSMUST00000150042.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48
mm10_v2_chr15_+_78428564_78428636	0.0721437	Hoxa2	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr3_-_107943362_107943379	0.0720911	Hoxa2	ENSMUST00000106683.1|Gstm6|ENSMUSG00000068762.5|glutathione S-transferase, mu 6
mm10_v2_chr8_-_3946863_3946863	0.0717012	Hoxa2	ENSMUST00000044060.7|Cd209c|ENSMUSG00000040165.7|CD209c antigen
mm10_v2_chr5_-_114858682_114858682	0.0703682	Hoxa2	ENSMUST00000066959.4|Gm9936|ENSMUSG00000054123.4|predicted gene 9936
mm10_v2_chr4_-_110290884_110290913	0.066087	Hoxa2	ENSMUST00000142722.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr1_-_163403627_163403679	0.0650555	Hoxa2	ENSMUST00000045138.4|Gorab|ENSMUSG00000040124.4|golgin, RAB6-interacting
mm10_v2_chr14_+_61599493_61599548	0.0615942	Hoxa2	ENSMUST00000039562.6|Trim13|ENSMUSG00000035235.6|tripartite motif-containing 13
mm10_v2_chr7_+_19368498_19368553	0.0604962	Hoxa2	ENSMUST00000132655.1|Ppp1r13l|ENSMUSG00000040734.8|protein phosphatase 1, regulatory (inhibitor) subunit 13 like
mm10_v2_chr17_-_53539411_53539459	0.0568814	Hoxa2	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr14_-_7450917_7450917	0.0556157	Hoxa2	ENSMUST00000169555.1|Gm3755|ENSMUSG00000091227.1|predicted gene 3755
mm10_v2_chr13_+_21787461_21787508	0.0552195	Hoxa2	ENSMUST00000110473.2|Hist1h2bp|ENSMUSG00000069308.7|histone cluster 1, H2bp 	ENSMUST00000102982.1|Hist1h2bp|ENSMUSG00000069308.7|histone cluster 1, H2bp
mm10_v2_chr5_+_25247344_25247363	0.0550701	Hoxa2	ENSMUST00000114950.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chrM_+_11734_11757	0.055057	Hoxa2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr8_+_77549393_77549444	0.0537326	Hoxa2	ENSMUST00000056237.8|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative) 	ENSMUST00000118622.1|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative)
mm10_v2_chr3_+_58526303_58526303	0.0529493	Hoxa2	ENSMUST00000138848.1|Eif2a|ENSMUSG00000027810.8|eukaryotic translation initiation factor 2A
mm10_v2_chr2_+_55411790_55411819	0.0521237	Hoxa2	ENSMUST00000155997.1|Gm14033|ENSMUSG00000087040.1|predicted gene 14033 	ENSMUST00000128307.1|Gm14033|ENSMUSG00000087040.1|predicted gene 14033
mm10_v2_chr9_+_54538984_54538993	0.0477368	Hoxa2	ENSMUST00000060242.5|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7 	ENSMUST00000118413.1|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7
mm10_v2_chr11_-_115933464_115933498	0.0461123	Hoxa2	ENSMUST00000021097.3|Recql5|ENSMUSG00000020752.5|RecQ protein-like 5
mm10_v2_chr19_+_46396885_46397004	0.0453603	Hoxa2	ENSMUST00000039922.6|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000111867.2|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000120778.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr13_-_54565368_54565435	0.0451053	Hoxa2	ENSMUST00000026989.8|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr12_-_80760541_80760730	0.0449515	Hoxa2	ENSMUST00000073251.6|Ccdc177|ENSMUSG00000062961.6|coiled-coil domain containing 177
mm10_v2_chr8_-_83594405_83594432	0.044691	Hoxa2	ENSMUST00000163837.1|Tecr|ENSMUSG00000031708.9|trans-2,3-enoyl-CoA reductase
mm10_v2_chrX_-_17571563_17571641	0.0410378	Hoxa2	ENSMUST00000177213.1|Fundc1|ENSMUSG00000025040.7|FUN14 domain containing 1
mm10_v2_chr15_+_75940952_75941015	0.0391921	Hoxa2	ENSMUST00000037260.6|Zfp623|ENSMUSG00000050846.8|zinc finger protein 623
mm10_v2_chr1_+_187215501_187215547	0.0371264	Hoxa2	ENSMUST00000097443.3|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000065573.7|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000110943.2|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000044812.5|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2
mm10_v2_chr3_-_158031705_158031774	0.0364123	Hoxa2	ENSMUST00000072875.8|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr3_+_116562965_116563004	0.0341279	Hoxa2	ENSMUST00000029573.5|Lrrc39|ENSMUSG00000027961.5|leucine rich repeat containing 39
mm10_v2_chr3_-_10351313_10351342	0.0336346	Hoxa2	ENSMUST00000108377.1|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1 	ENSMUST00000037839.5|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1
mm10_v2_chr11_-_86671169_86671186	0.0325985	Hoxa2	ENSMUST00000143991.1|Vmp1|ENSMUSG00000018171.3|vacuole membrane protein 1
mm10_v2_chr4_-_43653560_43653594	0.027171	Hoxa2	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr3_-_89245005_89245031	0.0268761	Hoxa2	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr17_-_24073479_24073490	0.0266487	Hoxa2	ENSMUST00000017090.5|Kctd5|ENSMUSG00000016946.5|potassium channel tetramerisation domain containing 5
mm10_v2_chr6_-_119388671_119388739	0.0217173	Hoxa2	ENSMUST00000169744.1|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr5_-_38159457_38159491	0.0212672	Hoxa2	ENSMUST00000031009.4|Nsg1|ENSMUSG00000029126.4|neuron specific gene family member 1
mm10_v2_chr11_+_108682602_108682639	0.0192156	Hoxa2	ENSMUST00000106718.3|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000106715.1|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000106724.3|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr4_-_109202217_109202272	0.0183731	Hoxa2	ENSMUST00000160774.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000030288.7|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000162787.2|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr17_+_66111605_66111665	0.0122814	Hoxa2	ENSMUST00000116556.2|Wash|ENSMUSG00000024101.8|WAS protein family homolog
mm10_v2_chr11_-_120990871_120991037	0.0115563	Hoxa2	ENSMUST00000154483.1|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr1_-_36445248_36445271	0.0114064	Hoxa2	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr6_+_49367739_49367896	0.00963092	Hoxa2	ENSMUST00000060561.8|Fam221a|ENSMUSG00000047115.9|family with sequence similarity 221, member A 	ENSMUST00000121903.1|Fam221a|ENSMUSG00000047115.9|family with sequence similarity 221, member A 	ENSMUST00000134786.1|Fam221a|ENSMUSG00000047115.9|family with sequence similarity 221, member A
mm10_v2_chr12_-_59061425_59061477	0.00961599	Hoxa2	ENSMUST00000021380.8|Trappc6b|ENSMUSG00000020993.8|trafficking protein particle complex 6B
mm10_v2_chr9_+_80066939_80066983	0.00940857	Hoxa2	ENSMUST00000164859.1|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr6_+_37870786_37870882	0.00845925	Hoxa2	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr17_+_6430112_6430204	0.00843535	Hoxa2	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr3_+_88716884_88716906	0.00825053	Hoxa2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr16_+_35983424_35983582	0.00721056	Hoxa2	ENSMUST00000173555.1|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr18_-_10610048_10610116	0.00516862	Hoxa2	ENSMUST00000115864.1|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr4_-_42856771_42856771	0.00208402	Hoxa2	ENSMUST00000107981.1|Gm12394|ENSMUSG00000078722.2|predicted gene 12394
mm10_v2_chr11_-_121204626_121204717	0.00161163	Hoxa2	ENSMUST00000026169.6|Ogfod3|ENSMUSG00000025169.6|2-oxoglutarate and iron-dependent oxygenase domain containing 3
mm10_v2_chr6_-_112696604_112696686	0.00113958	Hoxa2	ENSMUST00000113182.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000113180.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000068487.5|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000077088.4|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae)
