mm10_v2_chr2_-_168767136_168767201	3.45217	Hoxa3	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr3_+_55782500_55782521	3.02142	Hoxa3	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr17_-_70853482_70853546	2.95532	Hoxa3	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr2_-_168767029_168767104	2.61798	Hoxa3	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr9_+_119063429_119063467	2.53408	Hoxa3	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr2_+_109917639_109917656	1.45639	Hoxa3	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr13_-_102905740_102905814	1.29052	Hoxa3	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr13_-_102906046_102906111	1.27107	Hoxa3	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr3_+_159839729_159839745	1.21071	Hoxa3	ENSMUST00000068952.5|Wls|ENSMUSG00000028173.6|wntless homolog (Drosophila)
mm10_v2_chr3_-_86548268_86548290	1.03871	Hoxa3	ENSMUST00000077524.3|Mab21l2|ENSMUSG00000057777.3|mab-21-like 2 (C. elegans)
mm10_v2_chr17_+_17402672_17402771	0.809744	Hoxa3	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr10_+_37139558_37139558	0.762647	Hoxa3	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr10_-_37138863_37138937	0.762558	Hoxa3	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr12_+_59013379_59013398	0.645089	Hoxa3	ENSMUST00000021379.7|Gemin2|ENSMUSG00000060121.9|gem (nuclear organelle) associated protein 2
mm10_v2_chr5_-_138187177_138187237	0.595326	Hoxa3	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr7_-_38019505_38019552	0.539156	Hoxa3	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr5_+_138187485_138187521	0.523217	Hoxa3	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr1_-_172027269_172027313	0.489252	Hoxa3	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr2_+_36230426_36230491	0.350603	Hoxa3	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr16_-_45724600_45724619	0.342452	Hoxa3	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr2_-_164171113_164171113	0.206883	Hoxa3	ENSMUST00000045196.3|Kcns1|ENSMUSG00000040164.3|K+ voltage-gated channel, subfamily S, 1
mm10_v2_chr5_-_137531952_137531984	0.190505	Hoxa3	ENSMUST00000140139.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr2_-_69712461_69712606	0.151734	Hoxa3	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr4_-_14621669_14621786	0.146423	Hoxa3	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr7_-_45103747_45103822	0.144208	Hoxa3	ENSMUST00000003512.7|Fcgrt|ENSMUSG00000003420.7|Fc receptor, IgG, alpha chain transporter
mm10_v2_chr11_+_95384662_95384757	0.142118	Hoxa3	ENSMUST00000021243.7|Slc35b1|ENSMUSG00000020873.7|solute carrier family 35, member B1 	ENSMUST00000146556.1|Slc35b1|ENSMUSG00000020873.7|solute carrier family 35, member B1
mm10_v2_chr5_-_137531204_137531297	0.140703	Hoxa3	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr16_-_92400067_92400083	0.112341	Hoxa3	ENSMUST00000023672.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr14_+_79515618_79515694	0.103822	Hoxa3	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr14_+_64589802_64589848	0.100332	Hoxa3	ENSMUST00000180610.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr10_+_26772477_26772515	0.0834097	Hoxa3	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr7_-_116038734_116038750	0.0630058	Hoxa3	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr15_-_11037968_11037968	0.042501	Hoxa3	ENSMUST00000058007.5|Rxfp3|ENSMUSG00000060735.3|relaxin family peptide receptor 3
