mm10_v2_chr13_-_84064772_84064808	6.60554	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr1_+_159737510_159737510	6.49451	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111669.3|Tnr|ENSMUSG00000015829.8|tenascin R
mm10_v2_chr17_-_91092715_91092822	6.31618	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr5_-_62766153_62766246	5.88536	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr4_+_144893127_144893151	4.90879	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr15_+_81936753_81936839	4.85179	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr15_+_81936911_81936982	4.78472	Hoxd11_Cdx1_Hoxc11	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr4_+_144892813_144892835	3.18156	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr5_-_62765618_62765656	2.99912	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr4_-_64046925_64047015	2.94506	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107377.3|Tnc|ENSMUSG00000028364.9|tenascin C
mm10_v2_chr3_+_62419668_62419668	2.94087	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161057.1|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr8_+_57455898_57455923	2.77699	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr13_-_101692624_101692647	2.68254	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035532.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr17_+_3397189_3397207	2.55901	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr4_+_144893077_144893103	2.37718	Hoxd11_Cdx1_Hoxc11	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr3_+_76074270_76074270	2.32356	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038364.8|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr8_-_105943382_105943407	2.22874	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038896.7|Lcat|ENSMUSG00000035237.7|lecithin cholesterol acyltransferase
mm10_v2_chr18_+_69593361_69593450	2.22417	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr11_-_79504078_79504089	1.99247	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr4_+_136143497_136143497	1.79754	Hoxd11_Cdx1_Hoxc11	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr9_+_62858085_62858138	1.5987	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr7_-_134232005_134232054	1.55371	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134504.1|Adam12|ENSMUSG00000054555.5|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm10_v2_chr18_-_42899470_42899643	1.50857	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120632.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr6_+_80018877_80018945	1.44964	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr19_-_45812291_45812307	1.44285	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086993.4|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2
mm10_v2_chr10_-_25200110_25200178	1.40619	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr7_-_134232125_134232146	1.39367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127524.1|Adam12|ENSMUSG00000054555.5|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm10_v2_chr13_-_22035589_22035643	1.35416	Hoxd11_Cdx1_Hoxc11	ENSMUST00000091742.4|Hist1h2ah|ENSMUSG00000069302.4|histone cluster 1, H2ah
mm10_v2_chr2_-_24048857_24048868	1.26592	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114497.1|Hnmt|ENSMUSG00000026986.8|histamine N-methyltransferase
mm10_v2_chr5_+_63812447_63812538	1.16181	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr16_-_89508313_89508327	1.15821	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056118.2|Krtap7-1|ENSMUSG00000056706.2|keratin associated protein 7-1
mm10_v2_chr16_+_42907563_42907684	1.07199	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr19_-_50678642_50678702	1.06955	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072685.6|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1 	ENSMUST00000164039.2|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1
mm10_v2_chr11_-_109298066_109298079	1.03036	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr11_-_109298121_109298142	1.02851	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr11_-_109472611_109472688	1.0045	Hoxd11_Cdx1_Hoxc11	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr13_+_80883403_80883422	1.00005	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr5_-_51567717_51567732	0.959557	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127135.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 	ENSMUST00000151104.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr7_-_73537621_73537766	0.939539	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr13_-_23622502_23622563	0.903574	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062045.2|Hist1h1e|ENSMUSG00000051627.2|histone cluster 1, H1e
mm10_v2_chr9_-_55919605_55919605	0.878344	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr7_+_25306085_25306157	0.877386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119703.1|Tmem145|ENSMUSG00000043843.10|transmembrane protein 145 	ENSMUST00000108409.1|Tmem145|ENSMUSG00000043843.10|transmembrane protein 145
mm10_v2_chr11_-_110251736_110251776	0.842419	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.7|Abca6|ENSMUSG00000044749.7|ATP-binding cassette, sub-family A (ABC1), member 6
mm10_v2_chr4_+_20008357_20008451	0.837786	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117632.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein 	ENSMUST00000098244.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein
mm10_v2_chr3_+_108591279_108591414	0.834319	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr2_+_73271925_73271939	0.826133	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr10_+_116177351_116177417	0.802446	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155606.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R 	ENSMUST00000128399.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr11_+_29463735_29463888	0.800258	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155854.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr17_-_90455872_90456026	0.789646	Hoxd11_Cdx1_Hoxc11	ENSMUST00000174337.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000172466.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chrX_-_12673540_12673668	0.72188	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060108.6|1810030O07Rik|ENSMUSG00000044148.6|RIKEN cDNA 1810030O07 gene
mm10_v2_chr3_+_66985680_66985692	0.712588	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr1_+_19103022_19103043	0.708455	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chrX_+_106920618_106920632	0.706006	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060576.7|Lpar4|ENSMUSG00000049929.7|lysophosphatidic acid receptor 4
mm10_v2_chr1_-_175491130_175491130	0.700392	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr18_-_35498856_35498925	0.699829	Hoxd11_Cdx1_Hoxc11	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr16_-_4880284_4880315	0.629002	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr4_+_11704439_11704457	0.615023	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr6_-_13839916_13839942	0.609305	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr3_+_66219909_66219927	0.607502	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr18_-_42899294_42899317	0.606342	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117687.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr5_+_32611171_32611245	0.602065	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr2_+_145785980_145786152	0.597405	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110005.1|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2 	ENSMUST00000094480.4|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2
mm10_v2_chr10_+_26822560_26822602	0.59715	Hoxd11_Cdx1_Hoxc11	ENSMUST00000135866.1|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chrX_+_141475385_141475468	0.592118	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112931.1|Col4a5|ENSMUSG00000031274.10|collagen, type IV, alpha 5 	ENSMUST00000112930.1|Col4a5|ENSMUSG00000031274.10|collagen, type IV, alpha 5
mm10_v2_chr7_-_27181149_27181162	0.582121	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071986.6|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity 	ENSMUST00000121848.1|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity
mm10_v2_chr4_+_31964081_31964263	0.580451	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037607.4|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000080933.6|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108183.1|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108184.2|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7
mm10_v2_chr1_+_180109192_180109265	0.573196	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143176.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000135056.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr11_-_109298090_109298118	0.55348	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chrX_+_20364481_20364616	0.545076	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr17_+_31433054_31433071	0.527069	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr2_-_45112890_45113010	0.525482	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr5_-_24030649_24030707	0.511938	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030849.6|Fam126a|ENSMUSG00000028995.8|family with sequence similarity 126, member A
mm10_v2_chr18_-_62756275_62756347	0.51165	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr1_-_105659008_105659008	0.511443	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070699.8|Pign|ENSMUSG00000056536.8|phosphatidylinositol glycan anchor biosynthesis, class N
mm10_v2_chrX_-_75578188_75578247	0.508039	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr7_-_29906087_29906137	0.496765	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053521.8|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr2_-_26122769_26122838	0.477419	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140993.1|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing 	ENSMUST00000028300.5|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr5_+_107497718_107497759	0.475207	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr3_+_66985647_66985678	0.466794	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr14_+_65806066_65806232	0.459587	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139644.1|Pbk|ENSMUSG00000022033.3|PDZ binding kinase
mm10_v2_chr4_+_105789869_105789869	0.458973	Hoxd11_Cdx1_Hoxc11	ENSMUST00000184254.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr6_+_8259288_8259312	0.458768	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr11_-_77607812_77607860	0.458021	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058496.7|Taok1|ENSMUSG00000017291.7|TAO kinase 1
mm10_v2_chrX_+_82948861_82948915	0.450752	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr5_+_107497762_107497802	0.433649	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr9_+_121950988_121951044	0.432077	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043011.7|Fam198a|ENSMUSG00000038233.8|family with sequence similarity 198, member A
mm10_v2_chr11_-_109473220_109473294	0.431277	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070872.6|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr9_-_44799179_44799307	0.424336	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114705.1|Tmem25|ENSMUSG00000002032.10|transmembrane protein 25 	ENSMUST00000002100.7|Tmem25|ENSMUSG00000002032.10|transmembrane protein 25
mm10_v2_chr9_-_42124276_42124333	0.418038	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060989.8|Sorl1|ENSMUSG00000049313.8|sortilin-related receptor, LDLR class A repeats-containing
mm10_v2_chr4_+_62286441_62286516	0.399611	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084530.2|Slc31a2|ENSMUSG00000066152.5|solute carrier family 31, member 2
mm10_v2_chr2_+_32395896_32395896	0.382704	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr3_+_66985947_66985986	0.381557	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161726.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000160504.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr5_-_73256555_73256636	0.378612	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr2_+_22622183_22622205	0.367355	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr13_-_41273977_41273977	0.363321	Hoxd11_Cdx1_Hoxc11	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr15_-_81843699_81843755	0.363207	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092020.2|Gm8444|ENSMUSG00000069439.2|predicted gene 8444
mm10_v2_chr12_+_55836365_55836408	0.359455	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059250.6|Brms1l|ENSMUSG00000012076.7|breast cancer metastasis-suppressor 1-like
mm10_v2_chr2_-_114013619_114013638	0.355935	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090275.4|Gjd2|ENSMUSG00000068615.4|gap junction protein, delta 2
mm10_v2_chr4_-_82850721_82850814	0.343298	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr9_-_101198999_101199080	0.342717	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chrX_-_162565514_162565617	0.337583	Hoxd11_Cdx1_Hoxc11	ENSMUST00000154424.1|Reps2|ENSMUSG00000040855.9|RALBP1 associated Eps domain containing protein 2
mm10_v2_chr2_+_116900152_116900216	0.333884	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126467.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000128305.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000155323.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene
mm10_v2_chr10_+_123264076_123264125	0.330396	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr10_-_30655859_30655868	0.326676	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr7_+_4922251_4922251	0.323988	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047309.5|Nat14|ENSMUSG00000035285.5|N-acetyltransferase 14
mm10_v2_chr13_+_49582745_49582778	0.321389	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr3_-_141931523_141931565	0.321151	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106232.1|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr18_+_36939178_36939318	0.31708	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr8_+_40307458_40307458	0.316717	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr14_+_28511344_28511405	0.316133	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr18_+_37655891_37655915	0.312665	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr11_-_103267405_103267472	0.312367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr5_+_150259922_150259936	0.310375	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087204.5|Fry|ENSMUSG00000056602.8|furry homolog (Drosophila)
mm10_v2_chr2_-_31845925_31846005	0.30659	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028188.7|Fibcd1|ENSMUSG00000026841.7|fibrinogen C domain containing 1
mm10_v2_chr18_-_6490808_6490869	0.303197	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028100.6|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila) 	ENSMUST00000050542.5|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
mm10_v2_chr3_+_103575275_103575286	0.300822	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090697.4|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr3_+_88965812_88965812	0.298562	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chrX_+_36195938_36195946	0.292178	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048067.3|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr11_+_97798995_97799021	0.291725	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143571.1|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr10_-_105574435_105574451	0.280684	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061506.8|Tmtc2|ENSMUSG00000036019.8|transmembrane and tetratricopeptide repeat containing 2
mm10_v2_chrX_+_36195904_36195932	0.279526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chrX_+_36195968_36195993	0.277513	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115256.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr1_-_176807124_176807124	0.276235	Hoxd11_Cdx1_Hoxc11	ENSMUST00000057037.7|Cep170|ENSMUSG00000057335.6|centrosomal protein 170
mm10_v2_chr7_+_127800604_127800696	0.272691	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr11_-_21370452_21370485	0.271823	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102875.4|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr14_+_65805832_65805846	0.268655	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022612.3|Pbk|ENSMUSG00000022033.3|PDZ binding kinase
mm10_v2_chr2_+_178141920_178141939	0.268089	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103066.3|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr19_-_6067785_6067865	0.265347	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162575.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000159084.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161718.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000162810.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000025713.5|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000113543.2|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161528.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2
mm10_v2_chrX_+_36195950_36195959	0.264992	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115257.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr9_-_39604124_39604403	0.259367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000042485.4|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984 	ENSMUST00000141370.1|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984
mm10_v2_chr16_-_35769356_35769384	0.258543	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023554.8|Dirc2|ENSMUSG00000022848.8|disrupted in renal carcinoma 2 (human)
mm10_v2_chr1_-_155099630_155099636	0.257066	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr16_+_32877775_32877831	0.251757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr4_+_59035088_59035247	0.251186	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041160.6|Gng10|ENSMUSG00000038607.6|guanine nucleotide binding protein (G protein), gamma 10
mm10_v2_chr4_-_133968611_133968650	0.242661	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102552.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr19_+_60755947_60755987	0.240959	Hoxd11_Cdx1_Hoxc11	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr1_-_157256682_157256701	0.240858	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134543.1|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2
mm10_v2_chr1_-_152625212_152625220	0.23992	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr3_-_96220880_96220899	0.236814	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090782.3|Hist2h2ac|ENSMUSG00000068855.3|histone cluster 2, H2ac
mm10_v2_chr16_-_55838827_55838899	0.234722	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096026.2|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000036273.6|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000114457.1|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
mm10_v2_chr16_-_91728599_91728637	0.230954	Hoxd11_Cdx1_Hoxc11	ENSMUST00000122254.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr19_-_6987621_6987764	0.230688	Hoxd11_Cdx1_Hoxc11	ENSMUST00000130048.1|Vegfb|ENSMUSG00000024962.7|vascular endothelial growth factor B 	ENSMUST00000025914.6|Vegfb|ENSMUSG00000024962.7|vascular endothelial growth factor B
mm10_v2_chr4_-_88033328_88033373	0.226356	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr4_-_154636831_154636873	0.225508	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030902.6|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105637.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000070313.7|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105636.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000105638.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000097759.2|Prdm16|ENSMUSG00000039410.10|PR domain containing 16 	ENSMUST00000124771.1|Prdm16|ENSMUSG00000039410.10|PR domain containing 16
mm10_v2_chr1_-_144177259_144177372	0.225042	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr4_+_102254739_102254761	0.221559	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr15_-_42676967_42676978	0.216915	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr7_+_45062429_45062505	0.216565	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107830.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000003513.3|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000107829.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000150609.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein
mm10_v2_chr6_-_87335758_87335775	0.216489	Hoxd11_Cdx1_Hoxc11	ENSMUST00000042025.9|Antxr1|ENSMUSG00000033420.10|anthrax toxin receptor 1
mm10_v2_chr9_-_21989427_21989456	0.209888	Hoxd11_Cdx1_Hoxc11	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr1_-_72536930_72536999	0.20916	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047786.5|March4|ENSMUSG00000039372.5|membrane-associated ring finger (C3HC4) 4
mm10_v2_chr2_+_116067213_116067250	0.199869	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr6_+_95117740_95117880	0.198912	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032107.7|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8 	ENSMUST00000119582.1|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8
mm10_v2_chr4_+_5724304_5724357	0.193806	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr1_-_56969827_56969850	0.192636	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176759.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr16_-_91728701_91728802	0.190986	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114023.2|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1 	ENSMUST00000117644.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr15_+_6422240_6422327	0.19005	Hoxd11_Cdx1_Hoxc11	ENSMUST00000163082.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr17_-_35897073_35897141	0.188497	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150056.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000156817.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000146451.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene 	ENSMUST00000148482.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chr1_-_165934900_165935036	0.182424	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr2_-_116064721_116064749	0.180832	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr4_-_11981265_11981265	0.176116	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr14_+_8098196_8098296	0.175943	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112689.2|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase 	ENSMUST00000036682.7|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase
mm10_v2_chr6_+_125215551_125215591	0.175105	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032487.7|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000100942.2|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000063588.8|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1
mm10_v2_chr11_+_94211431_94211454	0.174011	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr4_-_155086271_155086379	0.17269	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030914.3|Rer1|ENSMUSG00000029048.3|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm10_v2_chr6_-_124965485_124965543	0.16798	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112439.2|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr17_-_35897371_35897431	0.167875	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148721.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chr2_-_33086366_33086447	0.165923	Hoxd11_Cdx1_Hoxc11	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr11_-_19018714_19018828	0.164365	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177417.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr11_-_69662625_69662642	0.163226	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018905.5|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr1_+_58646608_58646608	0.160921	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081455.4|Gm10068|ENSMUSG00000059647.4|predicted gene 10068
mm10_v2_chr6_-_87981482_87981622	0.159996	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056403.5|H1fx|ENSMUSG00000044927.5|H1 histone family, member X
mm10_v2_chr7_-_31051431_31051488	0.148297	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr6_+_71282280_71282280	0.137981	Hoxd11_Cdx1_Hoxc11	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr14_+_47663756_47663756	0.137875	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022391.7|Ktn1|ENSMUSG00000021843.10|kinectin 1
mm10_v2_chr9_-_123678873_123678885	0.133721	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr5_-_148552783_148552843	0.132798	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079324.7|Ubl3|ENSMUSG00000001687.9|ubiquitin-like 3 	ENSMUST00000164904.1|Ubl3|ENSMUSG00000001687.9|ubiquitin-like 3
mm10_v2_chr10_+_4611971_4612021	0.132314	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr2_-_79456750_79456761	0.128377	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr18_-_3281712_3281747	0.127537	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182204.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000154705.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000182833.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000151084.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr13_+_104109752_104109829	0.117453	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160322.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 	ENSMUST00000159574.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm10_v2_chr14_+_20674311_20674371	0.116736	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr2_+_69670100_69670134	0.116239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100050.3|Klhl41|ENSMUSG00000075307.3|kelch-like 41
mm10_v2_chr3_+_10088173_10088173	0.114497	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr8_-_83458386_83458397	0.113932	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081506.3|Scoc|ENSMUSG00000063253.4|short coiled-coil protein
mm10_v2_chr3_+_103575231_103575255	0.11343	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121834.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr18_-_37020679_37020679	0.0980946	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097612.2|Gm10545|ENSMUSG00000073594.2|predicted gene 10545
mm10_v2_chr13_+_23581563_23581598	0.0953427	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102968.1|Hist1h4d|ENSMUSG00000061482.6|histone cluster 1, H4d
mm10_v2_chr3_-_88458876_88459043	0.0885041	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr3_-_87768932_87768960	0.0790837	Hoxd11_Cdx1_Hoxc11	ENSMUST00000173184.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000172621.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000174759.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000172590.1|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1 	ENSMUST00000079083.5|Pear1|ENSMUSG00000028073.9|platelet endothelial aggregation receptor 1
mm10_v2_chr3_+_96221111_96221134	0.0784483	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chr2_+_71786923_71786978	0.0731758	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112101.1|Itga6|ENSMUSG00000027111.9|integrin alpha 6 	ENSMUST00000028522.3|Itga6|ENSMUSG00000027111.9|integrin alpha 6
mm10_v2_chr16_-_32877723_32877766	0.0727583	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119810.1|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr10_-_13324160_13324242	0.0717858	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr3_-_88459047_88459101	0.0697286	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr18_-_47333311_47333373	0.0659706	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr14_+_66868850_66868850	0.0648759	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100453.1|Gm5464|ENSMUSG00000075553.1|predicted gene 5464
mm10_v2_chr6_-_124965403_124965458	0.0634352	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129446.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana) 	ENSMUST00000032220.8|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr7_+_30565410_30565432	0.0632831	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr7_+_66109474_66109515	0.0606512	Hoxd11_Cdx1_Hoxc11	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr8_+_69902178_69902194	0.05924	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050373.5|Tssk6|ENSMUSG00000047654.5|testis-specific serine kinase 6
mm10_v2_chr19_-_56548122_56548222	0.058986	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr17_-_35910032_35910076	0.0589454	Hoxd11_Cdx1_Hoxc11	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr18_+_4994600_4994623	0.0588781	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr1_+_153874335_153874354	0.0578953	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr6_-_12749193_12749253	0.0574822	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046121.6|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A 	ENSMUST00000172356.1|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A
mm10_v2_chr15_+_59315088_59315128	0.0430261	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100640.4|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr6_+_125552948_125552980	0.0425106	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr17_+_35059035_35059130	0.0412235	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr15_-_82047579_82047610	0.04107	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166578.1|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 	ENSMUST00000080622.7|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
mm10_v2_chr2_-_79908428_79908438	0.0377014	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr13_+_22035821_22035848	0.0372904	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110455.2|Hist1h2bk|ENSMUSG00000062727.3|histone cluster 1, H2bk
mm10_v2_chr13_-_56895737_56895793	0.0370573	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr1_+_89454769_89454885	0.0359645	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr6_+_87981683_87981717	0.0310855	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143871.1|Gm5577|ENSMUSG00000084950.1|predicted gene 5577 	ENSMUST00000153372.1|Gm5577|ENSMUSG00000084950.1|predicted gene 5577
mm10_v2_chr2_-_180824596_180824630	0.0306129	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148700.1|Gm14340|ENSMUSG00000074507.6|predicted gene 14340
mm10_v2_chr17_-_78985428_78985468	0.0299326	Hoxd11_Cdx1_Hoxc11	ENSMUST00000118991.1|Prkd3|ENSMUSG00000024070.9|protein kinase D3
mm10_v2_chr17_-_71475285_71475343	0.028585	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127430.1|Smchd1|ENSMUSG00000024054.7|SMC hinge domain containing 1
mm10_v2_chr3_-_89349968_89350001	0.0284955	Hoxd11_Cdx1_Hoxc11	ENSMUST00000074582.6|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin) 	ENSMUST00000107448.2|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin) 	ENSMUST00000029676.5|Adam15|ENSMUSG00000028041.11|a disintegrin and metallopeptidase domain 15 (metargidin)
mm10_v2_chr4_+_105790534_105790534	0.0237832	Hoxd11_Cdx1_Hoxc11	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr6_-_124965207_124965243	0.0220814	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148485.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr1_-_56969864_56969875	0.019689	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177424.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr19_+_56548254_56548283	0.018694	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr4_-_14826582_14826589	0.0178165	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117268.1|Otud6b|ENSMUSG00000040550.10|OTU domain containing 6B
mm10_v2_chr7_-_119895446_119895543	0.0171849	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098080.2|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr19_-_46395722_46395756	0.0124416	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr9_-_123678782_123678850	0.00235312	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr5_+_137641334_137641437	0.0016766	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177466.1|Sap25|ENSMUSG00000079165.4|sin3 associated polypeptide 	ENSMUST00000166099.2|Sap25|ENSMUSG00000079165.4|sin3 associated polypeptide
mm10_v2_chr11_-_120624973_120625014	0.0013973	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106183.2|Sirt7|ENSMUSG00000025138.8|sirtuin 7 	ENSMUST00000080202.5|Sirt7|ENSMUSG00000025138.8|sirtuin 7
