mm10_v2_chr14_-_48665098_48665246	11.0399	Lhx4	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr19_+_44493472_44493472	7.11664	Lhx4	ENSMUST00000041163.4|Wnt8b|ENSMUSG00000036961.4|wingless related MMTV integration site 8b
mm10_v2_chr4_+_136143497_136143497	6.82087	Lhx4	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr7_-_49636847_49636851	6.76402	Lhx4	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr3_+_122419772_122419787	5.27559	Lhx4	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr11_+_59306920_59306935	4.7924	Lhx4	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr5_-_62765618_62765656	4.44616	Lhx4	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr9_+_72806874_72806874	4.00002	Lhx4	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr2_-_166155272_166155286	3.81408	Lhx4	ENSMUST00000088086.3|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr7_-_37773555_37773641	3.62611	Lhx4	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr15_-_56694525_56694554	3.56725	Lhx4	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr1_-_163289214_163289235	3.48917	Lhx4	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr2_-_166155624_166155671	3.40021	Lhx4	ENSMUST00000109249.2|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr4_+_65124174_65124174	3.06788	Lhx4	ENSMUST00000084501.3|Pappa|ENSMUSG00000028370.7|pregnancy-associated plasma protein A
mm10_v2_chr2_-_28916412_28916440	2.70763	Lhx4	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr7_-_45103747_45103822	2.70051	Lhx4	ENSMUST00000003512.7|Fcgrt|ENSMUSG00000003420.7|Fc receptor, IgG, alpha chain transporter
mm10_v2_chr15_-_103215285_103215366	2.66443	Lhx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr12_-_73047179_73047179	2.65986	Lhx4	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr5_-_62766153_62766246	2.52038	Lhx4	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr17_+_34592248_34592329	2.493	Lhx4	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chrX_+_150547375_150547459	2.48968	Lhx4	ENSMUST00000066337.6|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid 	ENSMUST00000112715.1|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid
mm10_v2_chr17_-_24073479_24073490	2.46624	Lhx4	ENSMUST00000017090.5|Kctd5|ENSMUSG00000016946.5|potassium channel tetramerisation domain containing 5
mm10_v2_chr13_-_102905740_102905814	2.30318	Lhx4	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr3_-_141982224_141982264	2.29926	Lhx4	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr1_+_153665666_153665709	2.27237	Lhx4	ENSMUST00000111814.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111810.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr10_-_37138863_37138937	2.22152	Lhx4	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr13_-_102906046_102906111	2.17651	Lhx4	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr2_+_83724397_83724555	2.16733	Lhx4	ENSMUST00000028499.4|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000141725.1|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000111740.2|Itgav|ENSMUSG00000027087.5|integrin alpha V
mm10_v2_chr2_-_73453918_73453979	2.15726	Lhx4	ENSMUST00000102679.1|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr2_-_174346712_174346712	2.14485	Lhx4	ENSMUST00000168292.1|Gm20721|ENSMUSG00000090625.1|predicted gene, 20721
mm10_v2_chr17_-_48432723_48432741	2.10433	Lhx4	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr9_+_120929216_120929251	2.06434	Lhx4	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr9_+_119063429_119063467	2.06079	Lhx4	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr1_+_153665587_153665595	2.05791	Lhx4	ENSMUST00000147700.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr18_-_15403680_15403687	2.03149	Lhx4	ENSMUST00000079081.6|Aqp4|ENSMUSG00000024411.9|aquaporin 4
mm10_v2_chr1_+_153665627_153665657	2.01065	Lhx4	ENSMUST00000147482.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr2_-_28916668_28916668	2.01038	Lhx4	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr14_+_69347587_69347587	2.00331	Lhx4	ENSMUST00000064831.5|Entpd4|ENSMUSG00000095463.2|ectonucleoside triphosphate diphosphohydrolase 4
mm10_v2_chr19_+_5474681_5474775	1.98132	Lhx4	ENSMUST00000165485.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000166253.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167371.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167855.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000070118.7|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm10_v2_chr7_-_37772868_37772891	1.96951	Lhx4	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr1_-_89933290_89933290	1.84645	Lhx4	ENSMUST00000036954.7|Gbx2|ENSMUSG00000034486.7|gastrulation brain homeobox 2
mm10_v2_chr15_+_25752860_25752979	1.74859	Lhx4	ENSMUST00000022882.5|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000135173.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr15_-_8710409_8710498	1.74577	Lhx4	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr17_-_14694223_14694262	1.74439	Lhx4	ENSMUST00000170872.1|Thbs2|ENSMUSG00000023885.8|thrombospondin 2
mm10_v2_chr8_-_46294592_46294671	1.72857	Lhx4	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr19_+_38395980_38396022	1.71378	Lhx4	ENSMUST00000054098.2|Slc35g1|ENSMUSG00000044026.2|solute carrier family 35, member G1
mm10_v2_chr11_+_109543694_109543754	1.69233	Lhx4	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr6_+_29859662_29859685	1.69227	Lhx4	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr16_-_22161450_22161450	1.68684	Lhx4	ENSMUST00000115379.1|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr6_+_29859686_29859710	1.67907	Lhx4	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr8_-_61902669_61902713	1.67292	Lhx4	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr1_+_106171752_106171879	1.66587	Lhx4	ENSMUST00000061047.6|Phlpp1|ENSMUSG00000044340.6|PH domain and leucine rich repeat protein phosphatase 1
mm10_v2_chrX_-_139871637_139871677	1.65636	Lhx4	ENSMUST00000033811.7|Morc4|ENSMUSG00000031434.9|microrchidia 4 	ENSMUST00000087401.5|Morc4|ENSMUSG00000031434.9|microrchidia 4
mm10_v2_chr15_-_64922290_64922315	1.624	Lhx4	ENSMUST00000023007.5|Adcy8|ENSMUSG00000022376.7|adenylate cyclase 8
mm10_v2_chr4_-_3938354_3938401	1.6001	Lhx4	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr9_+_64281575_64281630	1.5944	Lhx4	ENSMUST00000034964.6|Tipin|ENSMUSG00000032397.6|timeless interacting protein
mm10_v2_chr7_-_37769624_37769677	1.56189	Lhx4	ENSMUST00000175941.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr6_+_29859374_29859381	1.55895	Lhx4	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr15_-_42676967_42676978	1.5493	Lhx4	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr15_-_8710734_8710764	1.51709	Lhx4	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr3_-_39359128_39359160	1.49497	Lhx4	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr10_+_75037066_75037100	1.48853	Lhx4	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr10_+_75037291_75037332	1.46692	Lhx4	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr1_+_167598450_167598480	1.46037	Lhx4	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr9_-_71896047_71896102	1.44875	Lhx4	ENSMUST00000184448.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chrX_-_102157065_102157096	1.44706	Lhx4	ENSMUST00000056904.2|Ercc6l|ENSMUSG00000051220.2|excision repair cross-complementing rodent repair deficiency complementation group 6 like
mm10_v2_chrX_+_169685191_169685250	1.44416	Lhx4	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr1_-_72284248_72284314	1.413	Lhx4	ENSMUST00000097698.4|Pecr|ENSMUSG00000026189.7|peroxisomal trans-2-enoyl-CoA reductase 	ENSMUST00000027381.6|Pecr|ENSMUSG00000026189.7|peroxisomal trans-2-enoyl-CoA reductase
mm10_v2_chr4_-_58499398_58499409	1.41256	Lhx4	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr11_-_89418948_89418948	1.39274	Lhx4	ENSMUST00000050983.1|4932411E22Rik|ENSMUSG00000047490.1|RIKEN cDNA 4932411E22 gene
mm10_v2_chr12_+_38783455_38783482	1.36229	Lhx4	ENSMUST00000161980.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160701.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr3_-_67515487_67515523	1.31922	Lhx4	ENSMUST00000178314.1|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1 	ENSMUST00000054825.4|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1
mm10_v2_chr12_+_38783503_38783527	1.31833	Lhx4	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr10_-_40302186_40302206	1.30007	Lhx4	ENSMUST00000099945.4|Amd1|ENSMUSG00000075232.4|S-adenosylmethionine decarboxylase 1
mm10_v2_chr12_+_59013379_59013398	1.28011	Lhx4	ENSMUST00000021379.7|Gemin2|ENSMUSG00000060121.9|gem (nuclear organelle) associated protein 2
mm10_v2_chr17_-_78684262_78684352	1.1936	Lhx4	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr11_+_58171648_58171688	1.16025	Lhx4	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr2_+_132847719_132847743	1.15662	Lhx4	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr5_-_28210168_28210179	1.1455	Lhx4	ENSMUST00000117098.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr6_-_115037824_115037881	1.12606	Lhx4	ENSMUST00000174848.1|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 	ENSMUST00000032461.5|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)
mm10_v2_chr1_-_127840290_127840290	1.12558	Lhx4	ENSMUST00000061512.2|Map3k19|ENSMUSG00000051590.2|mitogen-activated protein kinase kinase kinase 19
mm10_v2_chr10_+_37139558_37139558	1.12146	Lhx4	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr5_+_9266097_9266202	1.11762	Lhx4	ENSMUST00000134991.1|9330182L06Rik|ENSMUSG00000056004.10|RIKEN cDNA 9330182L06 gene 	ENSMUST00000069538.7|9330182L06Rik|ENSMUSG00000056004.10|RIKEN cDNA 9330182L06 gene 	ENSMUST00000115348.2|9330182L06Rik|ENSMUSG00000056004.10|RIKEN cDNA 9330182L06 gene
mm10_v2_chr6_-_13871459_13871471	1.11033	Lhx4	ENSMUST00000155856.1|2610001J05Rik|ENSMUSG00000052419.6|RIKEN cDNA 2610001J05 gene
mm10_v2_chr13_-_95250166_95250336	1.10522	Lhx4	ENSMUST00000162153.1|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B 	ENSMUST00000160957.2|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B 	ENSMUST00000159598.1|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B 	ENSMUST00000162412.1|Pde8b|ENSMUSG00000021684.10|phosphodiesterase 8B
mm10_v2_chr5_-_28210022_28210034	1.09379	Lhx4	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr1_+_167598384_167598411	1.08354	Lhx4	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr12_+_38780284_38780349	1.06884	Lhx4	ENSMUST00000162563.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000161164.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160996.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr1_-_162866502_162866616	1.0644	Lhx4	ENSMUST00000046049.7|Fmo1|ENSMUSG00000040181.8|flavin containing monooxygenase 1
mm10_v2_chr17_+_82539258_82539258	1.04849	Lhx4	ENSMUST00000097278.3|Gm6594|ENSMUSG00000073371.3|predicted pseudogene 6594
mm10_v2_chr18_+_34758890_34758906	1.0359	Lhx4	ENSMUST00000049281.5|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chr15_+_31224371_31224400	1.03295	Lhx4	ENSMUST00000044524.9|Dap|ENSMUSG00000039168.9|death-associated protein
mm10_v2_chr6_+_34029421_34029456	1.02849	Lhx4	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr4_+_95557494_95557544	0.992275	Lhx4	ENSMUST00000079223.4|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000177394.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chr15_-_50889691_50889714	0.97742	Lhx4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr4_-_119294520_119294604	0.972083	Lhx4	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr5_-_70842617_70842617	0.969015	Lhx4	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr4_-_97778042_97778071	0.931243	Lhx4	ENSMUST00000146447.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr3_-_59220150_59220259	0.915135	Lhx4	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr1_-_185329331_185329401	0.898705	Lhx4	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr5_-_3647806_3648009	0.884011	Lhx4	ENSMUST00000119783.1|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1 	ENSMUST00000007559.8|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1
mm10_v2_chr6_+_145934113_145934136	0.883743	Lhx4	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr3_-_49757257_49757316	0.878044	Lhx4	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr3_+_102734496_102734530	0.867309	Lhx4	ENSMUST00000029451.5|Tspan2|ENSMUSG00000027858.7|tetraspanin 2
mm10_v2_chr16_-_56024628_56024668	0.85354	Lhx4	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr5_-_5266038_5266292	0.830486	Lhx4	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chrX_-_74246364_74246438	0.828735	Lhx4	ENSMUST00000130007.1|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chrX_+_16619698_16619758	0.827474	Lhx4	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr1_-_93445642_93445686	0.803848	Lhx4	ENSMUST00000042498.7|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chrX_-_160138375_160138435	0.800917	Lhx4	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr17_-_67950908_67950983	0.784331	Lhx4	ENSMUST00000164647.1|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr2_+_163658370_163658510	0.736221	Lhx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr5_+_15516489_15516489	0.735046	Lhx4	ENSMUST00000178227.1|Gm21847|ENSMUSG00000094230.1|predicted gene, 21847
mm10_v2_chr6_+_113333304_113333332	0.734196	Lhx4	ENSMUST00000147945.1|Ogg1|ENSMUSG00000030271.8|8-oxoguanine DNA-glycosylase 1
mm10_v2_chr10_-_35711891_35711891	0.722864	Lhx4	ENSMUST00000080898.2|Amd2|ENSMUSG00000063953.2|S-adenosylmethionine decarboxylase 2
mm10_v2_chr3_+_66985700_66985740	0.721702	Lhx4	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr16_-_45844303_45844381	0.714344	Lhx4	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr16_-_45844228_45844236	0.696686	Lhx4	ENSMUST00000076333.5|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr10_-_64090241_64090262	0.695845	Lhx4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr12_+_38780817_38780854	0.685361	Lhx4	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr14_+_74735641_74735663	0.679467	Lhx4	ENSMUST00000177283.1|Esd|ENSMUSG00000021996.10|esterase D/formylglutathione hydrolase
mm10_v2_chr13_-_89742244_89742334	0.673166	Lhx4	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr7_-_45830776_45830944	0.672958	Lhx4	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr7_+_100159241_100159315	0.667984	Lhx4	ENSMUST00000032967.3|Lipt2|ENSMUSG00000030725.3|lipoyl(octanoyl) transferase 2 (putative)
mm10_v2_chr9_+_96258697_96258711	0.6664	Lhx4	ENSMUST00000179416.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr7_+_140941550_140941615	0.661758	Lhx4	ENSMUST00000079403.4|Athl1|ENSMUSG00000062031.6|ATH1, acid trehalase-like 1 (yeast)
mm10_v2_chr1_-_82586781_82586849	0.637584	Lhx4	ENSMUST00000087050.5|Col4a4|ENSMUSG00000067158.8|collagen, type IV, alpha 4
mm10_v2_chr15_+_81744848_81744848	0.619204	Lhx4	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr13_-_97747373_97747384	0.619122	Lhx4	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr2_-_33718789_33718899	0.616534	Lhx4	ENSMUST00000130532.1|9430024E24Rik|ENSMUSG00000085463.1|RIKEN cDNA 9430024E24 gene
mm10_v2_chr2_-_109280718_109280767	0.600573	Lhx4	ENSMUST00000147770.1|Mettl15|ENSMUSG00000057234.3|methyltransferase like 15
mm10_v2_chr14_+_26122609_26122609	0.590963	Lhx4	ENSMUST00000100810.6|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr7_-_38019505_38019552	0.59035	Lhx4	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr11_+_60537978_60538074	0.586352	Lhx4	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr17_+_46650328_46650340	0.561038	Lhx4	ENSMUST00000043464.7|Cul7|ENSMUSG00000038545.7|cullin 7
mm10_v2_chr2_+_153161303_153161339	0.549641	Lhx4	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr9_+_100597686_100597798	0.544693	Lhx4	ENSMUST00000124487.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr5_+_96209463_96209493	0.540156	Lhx4	ENSMUST00000117766.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chr3_+_24333046_24333046	0.530596	Lhx4	ENSMUST00000077389.6|Gm7536|ENSMUSG00000057036.6|predicted gene 7536
mm10_v2_chr6_-_136941887_136941911	0.522035	Lhx4	ENSMUST00000111891.1|Arhgdib|ENSMUSG00000030220.7|Rho, GDP dissociation inhibitor (GDI) beta
mm10_v2_chr19_+_46397009_46397033	0.518775	Lhx4	ENSMUST00000118440.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr13_-_58354862_58354862	0.515268	Lhx4	ENSMUST00000043605.5|Kif27|ENSMUSG00000060176.3|kinesin family member 27
mm10_v2_chr4_+_147492417_147492417	0.50792	Lhx4	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chr3_-_66296807_66296837	0.50521	Lhx4	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr11_-_31671727_31671856	0.494618	Lhx4	ENSMUST00000109415.1|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr11_-_31671863_31671885	0.488299	Lhx4	ENSMUST00000058060.7|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr16_-_44016387_44016436	0.481459	Lhx4	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr17_-_56036546_56036647	0.449097	Lhx4	ENSMUST00000003268.9|Sh3gl1|ENSMUSG00000003200.9|SH3-domain GRB2-like 1
mm10_v2_chr6_+_38381469_38381528	0.424405	Lhx4	ENSMUST00000162554.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26 	ENSMUST00000161751.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26
mm10_v2_chr16_-_16829276_16829349	0.419283	Lhx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr17_-_26099257_26099259	0.412104	Lhx4	ENSMUST00000053575.3|Gm8186|ENSMUSG00000049124.3|predicted gene 8186
mm10_v2_chr19_+_46396885_46397004	0.411334	Lhx4	ENSMUST00000039922.6|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000111867.2|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000120778.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr16_-_90810365_90810429	0.391835	Lhx4	ENSMUST00000140920.1|Urb1|ENSMUSG00000039929.8|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm10_v2_chr19_+_10015016_10015055	0.38507	Lhx4	ENSMUST00000137637.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1 	ENSMUST00000149967.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1
mm10_v2_chr6_+_7555053_7555096	0.382793	Lhx4	ENSMUST00000090679.2|Tac1|ENSMUSG00000061762.6|tachykinin 1 	ENSMUST00000184986.1|Tac1|ENSMUSG00000061762.6|tachykinin 1
mm10_v2_chrX_-_74246534_74246556	0.378357	Lhx4	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr4_+_15881255_15881272	0.364439	Lhx4	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chr11_-_4095344_4095445	0.33549	Lhx4	ENSMUST00000004868.5|Mtfp1|ENSMUSG00000004748.5|mitochondrial fission process 1
mm10_v2_chr9_+_72958785_72958850	0.318918	Lhx4	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr5_+_96210115_96210161	0.309748	Lhx4	ENSMUST00000036437.6|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1 	ENSMUST00000121477.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chr18_-_56975333_56975376	0.295689	Lhx4	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr2_-_170194033_170194064	0.290889	Lhx4	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr10_-_64090265_64090297	0.29051	Lhx4	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr14_-_96519067_96519102	0.267607	Lhx4	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr10_-_63927434_63927434	0.255976	Lhx4	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr8_-_21906412_21906437	0.247269	Lhx4	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr13_-_83729544_83729584	0.240119	Lhx4	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr2_+_36230426_36230491	0.20504	Lhx4	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr16_+_43235856_43235880	0.195426	Lhx4	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr10_-_62507737_62507764	0.185001	Lhx4	ENSMUST00000020271.6|Srgn|ENSMUSG00000020077.8|serglycin
mm10_v2_chr17_-_46031813_46031863	0.172195	Lhx4	ENSMUST00000024747.7|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr7_-_46667375_46667378	0.140825	Lhx4	ENSMUST00000107669.2|Tph1|ENSMUSG00000040046.7|tryptophan hydroxylase 1
mm10_v2_chr8_+_13869641_13869740	0.139227	Lhx4	ENSMUST00000051870.7|Champ1|ENSMUSG00000047710.7|chromosome alignment maintaining phosphoprotein 1 	ENSMUST00000128557.1|Champ1|ENSMUSG00000047710.7|chromosome alignment maintaining phosphoprotein 1
mm10_v2_chr1_-_152625212_152625220	0.132258	Lhx4	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr1_-_168432270_168432347	0.131163	Lhx4	ENSMUST00000072863.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr6_+_40471352_40471526	0.13078	Lhx4	ENSMUST00000114779.2|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000031971.6|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000121360.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117411.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117830.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1
mm10_v2_chr1_+_63176818_63176919	0.120618	Lhx4	ENSMUST00000129339.1|Eef1b2|ENSMUSG00000025967.10|eukaryotic translation elongation factor 1 beta 2
mm10_v2_chr14_-_104522615_104522707	0.118444	Lhx4	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr5_-_17888884_17888959	0.114807	Lhx4	ENSMUST00000169095.1|Cd36|ENSMUSG00000002944.9|CD36 antigen
mm10_v2_chr9_+_108339048_108339080	0.108069	Lhx4	ENSMUST00000082429.5|Gpx1|ENSMUSG00000063856.6|glutathione peroxidase 1
mm10_v2_chr2_-_112480817_112480817	0.0843569	Lhx4	ENSMUST00000099589.2|Chrm5|ENSMUSG00000074939.2|cholinergic receptor, muscarinic 5
mm10_v2_chr11_+_82781108_82781224	0.081818	Lhx4	ENSMUST00000092849.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000021039.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000080461.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173347.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173727.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173009.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000131537.2|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173722.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent
mm10_v2_chr3_-_116711820_116711847	0.0542852	Lhx4	ENSMUST00000153108.1|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr2_-_148046896_148046991	0.0498949	Lhx4	ENSMUST00000172928.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2 	ENSMUST00000047315.3|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chr6_+_34780412_34780467	0.0386915	Lhx4	ENSMUST00000115016.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115017.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr2_-_160619971_160619971	0.0359246	Lhx4	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr7_-_5014645_5014697	0.0290723	Lhx4	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr2_-_72986716_72986716	0.0110285	Lhx4	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr6_+_136518820_136518851	0.00587427	Lhx4	ENSMUST00000032335.6|Atf7ip|ENSMUSG00000030213.6|activating transcription factor 7 interacting protein
mm10_v2_chr8_+_110618577_110618638	0.000516987	Lhx4	ENSMUST00000034190.9|Vac14|ENSMUSG00000010936.10|Vac14 homolog (S. cerevisiae)
