mm10_v2_chr18_-_78206408_78206440	4.51842	Nanog	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr3_+_62419668_62419668	4.1002	Nanog	ENSMUST00000161057.1|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr14_+_65970610_65970621	3.64213	Nanog	ENSMUST00000127387.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr19_-_36736653_36736670	3.61075	Nanog	ENSMUST00000087321.2|Ppp1r3c|ENSMUSG00000067279.2|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm10_v2_chr10_-_25200110_25200178	3.52037	Nanog	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr18_-_35215008_35215033	3.39879	Nanog	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr15_+_9436028_9436083	3.26666	Nanog	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr4_+_154960915_154960930	3.20717	Nanog	ENSMUST00000049621.6|Hes5|ENSMUSG00000048001.7|hairy and enhancer of split 5 (Drosophila)
mm10_v2_chr14_+_65971049_65971074	3.15448	Nanog	ENSMUST00000128539.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr1_+_146497614_146497707	3.1534	Nanog	ENSMUST00000132847.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3 	ENSMUST00000166814.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3
mm10_v2_chr11_-_109298121_109298142	2.95801	Nanog	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr14_+_65970804_65970903	2.95524	Nanog	ENSMUST00000138191.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr11_-_109298066_109298079	2.94925	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr1_+_169655493_169655508	2.88713	Nanog	ENSMUST00000027997.3|Rgs5|ENSMUSG00000026678.5|regulator of G-protein signaling 5
mm10_v2_chr4_+_20008357_20008451	2.73386	Nanog	ENSMUST00000117632.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein 	ENSMUST00000098244.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein
mm10_v2_chr13_-_41273977_41273977	2.67963	Nanog	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr11_+_62248977_62249011	2.64225	Nanog	ENSMUST00000018644.2|Adora2b|ENSMUSG00000018500.2|adenosine A2b receptor
mm10_v2_chr4_-_109665249_109665372	2.58943	Nanog	ENSMUST00000063531.4|Cdkn2c|ENSMUSG00000028551.8|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm10_v2_chr11_-_20332689_20332774	2.50507	Nanog	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr11_-_20332654_20332688	2.43734	Nanog	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr10_+_58394381_58394395	2.36112	Nanog	ENSMUST00000105468.1|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr1_-_52490736_52490736	2.29177	Nanog	ENSMUST00000170269.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chr10_+_58394361_58394380	2.27541	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr2_+_11339461_11339501	2.20388	Nanog	ENSMUST00000131188.1|Gm13293|ENSMUSG00000086006.1|predicted gene 13293
mm10_v2_chr6_+_80018877_80018945	2.19967	Nanog	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr8_+_110721462_110721486	2.1715	Nanog	ENSMUST00000052457.8|Mtss1l|ENSMUSG00000033763.8|metastasis suppressor 1-like
mm10_v2_chr1_+_74362108_74362156	2.08673	Nanog	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr13_-_51567084_51567084	2.07827	Nanog	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr11_+_43151599_43151599	2.07042	Nanog	ENSMUST00000077659.5|Atp10b|ENSMUSG00000055415.7|ATPase, class V, type 10B
mm10_v2_chr2_+_62664279_62664300	2.05461	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr9_-_58159201_58159239	1.97036	Nanog	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr11_+_86484647_86484716	1.88778	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr5_+_63812447_63812538	1.83536	Nanog	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr2_+_134786154_134786170	1.71826	Nanog	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr15_-_71954395_71954424	1.71771	Nanog	ENSMUST00000159410.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr6_+_80019008_80019048	1.6853	Nanog	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr1_+_153899937_153899953	1.68049	Nanog	ENSMUST00000086199.5|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr6_-_146502099_146502133	1.61987	Nanog	ENSMUST00000053273.8|Itpr2|ENSMUSG00000030287.9|inositol 1,4,5-triphosphate receptor 2
mm10_v2_chr10_+_90576570_90576668	1.60119	Nanog	ENSMUST00000182786.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182600.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr2_-_144527341_144527424	1.51679	Nanog	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr10_+_38965515_38965558	1.51599	Nanog	ENSMUST00000019992.5|Lama4|ENSMUSG00000019846.5|laminin, alpha 4
mm10_v2_chr11_+_109485606_109485713	1.50543	Nanog	ENSMUST00000106697.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr11_-_109298090_109298118	1.50003	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr16_-_3872378_3872411	1.44275	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr12_+_35047180_35047230	1.43191	Nanog	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr7_+_112742025_112742060	1.4281	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr7_+_49246131_49246202	1.40833	Nanog	ENSMUST00000064395.6|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr3_-_57301919_57301956	1.40658	Nanog	ENSMUST00000029376.8|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr2_+_116067213_116067250	1.39025	Nanog	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr5_+_19907774_19907861	1.38552	Nanog	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr9_-_15357692_15357788	1.36846	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr12_-_72408934_72409054	1.35804	Nanog	ENSMUST00000078505.7|Rtn1|ENSMUSG00000021087.11|reticulon 1
mm10_v2_chr10_-_78352469_78352515	1.35104	Nanog	ENSMUST00000138035.1|Agpat3|ENSMUSG00000001211.8|1-acylglycerol-3-phosphate O-acyltransferase 3
mm10_v2_chr12_-_34528844_34528904	1.32796	Nanog	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr3_-_110143937_110144011	1.31596	Nanog	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr3_+_68869563_68869589	1.30647	Nanog	ENSMUST00000054551.2|1110032F04Rik|ENSMUSG00000046999.2|RIKEN cDNA 1110032F04 gene
mm10_v2_chr6_-_124779686_124779742	1.28905	Nanog	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chrX_-_135009185_135009225	1.27351	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr5_+_19907502_19907551	1.27216	Nanog	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr10_+_33905015_33905111	1.26281	Nanog	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr7_+_64287665_64287676	1.25676	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr17_+_3397189_3397207	1.25496	Nanog	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr1_-_153900198_153900210	1.2357	Nanog	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr3_+_79884576_79884597	1.21343	Nanog	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr2_-_173276144_173276189	1.17609	Nanog	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr3_+_79884496_79884571	1.17518	Nanog	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr12_-_40037387_40037429	1.16601	Nanog	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr13_-_85127514_85127514	1.13683	Nanog	ENSMUST00000179230.1|Gm4076|ENSMUSG00000096449.1|predicted gene 4076
mm10_v2_chr7_+_128246953_128246993	1.10577	Nanog	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr2_+_164948219_164948245	1.09756	Nanog	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr3_-_146499721_146499803	1.03705	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr17_-_81649607_81649607	1.03525	Nanog	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr10_+_26772477_26772515	1.02729	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr7_+_128246812_128246948	1.01041	Nanog	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr14_-_26971232_26971232	0.981479	Nanog	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr13_-_89742244_89742334	0.981475	Nanog	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr7_-_115846080_115846112	0.957204	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr12_+_24651346_24651409	0.933913	Nanog	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chr1_+_174501796_174501843	0.899382	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr13_+_104178797_104178872	0.893372	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr15_-_51991679_51991760	0.88971	Nanog	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr6_+_8259288_8259312	0.886538	Nanog	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr12_+_111814170_111814245	0.87989	Nanog	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr2_-_45112890_45113010	0.872559	Nanog	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr4_-_49597425_49597493	0.863304	Nanog	ENSMUST00000150664.1|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr16_+_19760902_19761054	0.840622	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr19_-_56822161_56822220	0.81172	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr15_-_50889043_50889054	0.806962	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr17_-_43543639_43543639	0.803585	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr10_+_40349265_40349387	0.793307	Nanog	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr13_-_9765137_9765321	0.786109	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr14_-_78536762_78536851	0.783086	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr18_+_57142782_57142796	0.773477	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr15_+_99393219_99393248	0.757395	Nanog	ENSMUST00000159209.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr12_-_83487708_83487729	0.754041	Nanog	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr2_+_29060239_29060287	0.747026	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr1_+_50927511_50927543	0.744738	Nanog	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr6_+_29348069_29348123	0.74205	Nanog	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr6_+_8259327_8259350	0.734809	Nanog	ENSMUST00000159378.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr18_+_77185815_77185879	0.727004	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chrX_-_53269786_53269858	0.712943	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr6_+_71282280_71282280	0.711463	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr13_-_19619820_19619830	0.710922	Nanog	ENSMUST00000002885.6|Epdr1|ENSMUSG00000002808.6|ependymin related protein 1 (zebrafish)
mm10_v2_chr13_-_89742490_89742515	0.697037	Nanog	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr10_+_39612934_39612934	0.687867	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr12_-_101958148_101958246	0.681956	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chrX_+_134308084_134308209	0.679235	Nanog	ENSMUST00000081064.5|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000101251.1|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000129782.1|Cenpi|ENSMUSG00000031262.6|centromere protein I
mm10_v2_chr3_-_152193803_152193831	0.675278	Nanog	ENSMUST00000050073.6|Dnajb4|ENSMUSG00000028035.7|DnaJ (Hsp40) homolog, subfamily B, member 4
mm10_v2_chr15_+_99392882_99392903	0.666952	Nanog	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr4_-_42661893_42661893	0.663687	Nanog	ENSMUST00000108006.3|Il11ra2|ENSMUSG00000078735.3|interleukin 11 receptor, alpha chain 2
mm10_v2_chr11_+_69088490_69088553	0.660451	Nanog	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chr6_-_39725448_39725478	0.650788	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr10_-_127121125_127121160	0.649308	Nanog	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr3_+_88965812_88965812	0.647899	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr15_+_99392948_99393022	0.642163	Nanog	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr9_+_58554799_58554799	0.637528	Nanog	ENSMUST00000098676.2|Gm10657|ENSMUSG00000074273.2|predicted gene 10657
mm10_v2_chr2_+_112379204_112379253	0.630796	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr2_+_69897255_69897303	0.629936	Nanog	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr12_+_72441852_72441866	0.622736	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr3_+_121291725_121291817	0.62251	Nanog	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr13_-_47106176_47106206	0.60235	Nanog	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr17_-_59013264_59013372	0.60108	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr6_-_108185552_108185587	0.591474	Nanog	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr9_-_51102062_51102085	0.589673	Nanog	ENSMUST00000170947.1|4833427G06Rik|ENSMUSG00000032057.8|RIKEN cDNA 4833427G06 gene
mm10_v2_chr5_+_135168382_135168442	0.588115	Nanog	ENSMUST00000111187.3|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B 	ENSMUST00000111188.1|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chrX_-_56822308_56822346	0.587761	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr12_+_102128718_102128739	0.582203	Nanog	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr13_+_12565868_12565883	0.580943	Nanog	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr11_-_94321957_94321988	0.576089	Nanog	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr7_+_59228743_59228769	0.5593	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr3_-_37312418_37312465	0.557273	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr1_-_182282218_182282239	0.546333	Nanog	ENSMUST00000133052.1|Degs1|ENSMUSG00000038633.5|degenerative spermatocyte homolog 1 (Drosophila)
mm10_v2_chr19_+_7557473_7557497	0.535313	Nanog	ENSMUST00000141887.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136756.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr7_+_113514085_113514109	0.533181	Nanog	ENSMUST00000122890.1|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr11_+_75531690_75531743	0.529742	Nanog	ENSMUST00000149727.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000042561.7|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000108433.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000143035.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr2_-_176149825_176149825	0.529258	Nanog	ENSMUST00000109049.3|Gm2004|ENSMUSG00000095648.1|predicted gene 2004 	ENSMUST00000179349.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr10_+_75037066_75037100	0.511079	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr7_+_100706623_100706668	0.507023	Nanog	ENSMUST00000107042.1|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr7_+_25267669_25267723	0.506578	Nanog	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr9_-_7184440_7184518	0.504316	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chrX_-_153037549_153037581	0.501405	Nanog	ENSMUST00000051484.3|Mageh1|ENSMUSG00000047238.3|melanoma antigen, family H, 1
mm10_v2_chr2_-_140066661_140066805	0.497343	Nanog	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr11_-_46052311_46052311	0.478304	Nanog	ENSMUST00000093169.2|Gm12166|ENSMUSG00000069899.3|predicted gene 12166
mm10_v2_chr13_+_23752267_23752351	0.475849	Nanog	ENSMUST00000091703.2|Hist1h3b|ENSMUSG00000069267.2|histone cluster 1, H3b
mm10_v2_chr6_+_8259379_8259460	0.472585	Nanog	ENSMUST00000162034.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000160705.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000159433.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr7_+_128688480_128688500	0.467302	Nanog	ENSMUST00000118605.1|Inpp5f|ENSMUSG00000042105.12|inositol polyphosphate-5-phosphatase F
mm10_v2_chr3_-_39359128_39359160	0.459624	Nanog	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr11_-_40733373_40733442	0.459599	Nanog	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr19_+_7557452_7557465	0.459119	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr3_+_114030532_114030571	0.45789	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chrX_+_159840463_159840481	0.456743	Nanog	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr9_-_15301555_15301607	0.456735	Nanog	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr15_+_25773985_25774042	0.443658	Nanog	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr14_-_26534870_26534931	0.438854	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr18_+_82554463_82554583	0.427337	Nanog	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr6_+_125145235_125145251	0.419895	Nanog	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr5_-_137684665_137684729	0.418965	Nanog	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr4_+_109343029_109343081	0.414131	Nanog	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr6_-_102464667_102464667	0.411345	Nanog	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr3_+_65666223_65666259	0.407031	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr3_-_82876483_82876527	0.398332	Nanog	ENSMUST00000048647.7|Rbm46|ENSMUSG00000033882.9|RNA binding motif protein 46
mm10_v2_chr13_-_9764943_9764994	0.396848	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr2_+_69897220_69897247	0.394232	Nanog	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr8_-_89044162_89044195	0.393709	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr5_-_124249758_124249782	0.379012	Nanog	ENSMUST00000162812.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr8_+_78509319_78509399	0.378837	Nanog	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr14_+_79515618_79515694	0.375553	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr16_+_3872368_3872385	0.374905	Nanog	ENSMUST00000151988.1|Naa60|ENSMUSG00000005982.7|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm10_v2_chr11_+_115154139_115154194	0.37227	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr19_-_50030735_50030735	0.370631	Nanog	ENSMUST00000071866.1|Rpl13a-ps1|ENSMUSG00000062083.1|ribosomal protein 13A, pseudogene 1
mm10_v2_chr5_+_135168283_135168373	0.363718	Nanog	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr11_-_101171302_101171353	0.362794	Nanog	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr15_+_80097866_80097873	0.361373	Nanog	ENSMUST00000143928.1|Syngr1|ENSMUSG00000022415.6|synaptogyrin 1
mm10_v2_chr16_+_87454976_87454987	0.360042	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr5_+_57718021_57718104	0.359186	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr1_+_135584773_135584773	0.354913	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr10_+_42502197_42502290	0.349172	Nanog	ENSMUST00000105499.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr16_-_23520579_23520673	0.342203	Nanog	ENSMUST00000089883.5|Masp1|ENSMUSG00000022887.8|mannan-binding lectin serine peptidase 1
mm10_v2_chr5_-_139484475_139484549	0.3373	Nanog	ENSMUST00000110851.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A 	ENSMUST00000079996.6|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr15_-_81843699_81843755	0.335103	Nanog	ENSMUST00000092020.2|Gm8444|ENSMUSG00000069439.2|predicted gene 8444
mm10_v2_chr6_+_38551334_38551493	0.334239	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr9_-_123678873_123678885	0.327182	Nanog	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr4_+_59035088_59035247	0.326763	Nanog	ENSMUST00000041160.6|Gng10|ENSMUSG00000038607.6|guanine nucleotide binding protein (G protein), gamma 10
mm10_v2_chr12_+_36381519_36381594	0.326667	Nanog	ENSMUST00000062041.5|Ispd|ENSMUSG00000043153.5|isoprenoid synthase domain containing
mm10_v2_chr15_-_66831625_66831668	0.319103	Nanog	ENSMUST00000164163.1|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr16_+_13671858_13671918	0.318936	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr3_+_10088173_10088173	0.314242	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr10_-_9901079_9901250	0.309639	Nanog	ENSMUST00000141722.1|Stxbp5|ENSMUSG00000019790.10|syntaxin binding protein 5 (tomosyn)
mm10_v2_chr4_+_12906838_12906881	0.305668	Nanog	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr5_-_124187150_124187225	0.298305	Nanog	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr16_+_13671980_13672032	0.297417	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr11_+_70970181_70970213	0.296441	Nanog	ENSMUST00000018593.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr2_+_156144203_156144245	0.290752	Nanog	ENSMUST00000109597.3|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1 	ENSMUST00000109598.3|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1 	ENSMUST00000119950.1|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1
mm10_v2_chr12_+_72441933_72441970	0.290656	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr2_-_116067391_116067444	0.289622	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr6_-_120531289_120531328	0.287088	Nanog	ENSMUST00000075303.6|Cecr5|ENSMUSG00000058979.6|cat eye syndrome chromosome region, candidate 5
mm10_v2_chr12_-_91384403_91384430	0.283666	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr19_-_32196393_32196428	0.281688	Nanog	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr19_-_45783512_45783558	0.279472	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr8_-_34965631_34965714	0.278412	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr17_+_35841668_35841683	0.276165	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr16_+_20696175_20696211	0.275183	Nanog	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr7_-_98656530_98656600	0.270784	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr9_+_44334685_44334715	0.265741	Nanog	ENSMUST00000052686.2|H2afx|ENSMUSG00000049932.2|H2A histone family, member X
mm10_v2_chr9_+_108662098_108662219	0.250965	Nanog	ENSMUST00000035222.5|Slc25a20|ENSMUSG00000032602.5|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm10_v2_chr1_-_152625212_152625220	0.244969	Nanog	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr6_+_125552948_125552980	0.237156	Nanog	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chrX_+_8271133_8271179	0.237104	Nanog	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr7_+_110627650_110627669	0.234302	Nanog	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr11_-_98053415_98053467	0.232393	Nanog	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr8_-_25201349_25201459	0.230481	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr13_+_111686303_111686351	0.229411	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr18_+_24205303_24205348	0.224139	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr6_-_23132981_23132992	0.218918	Nanog	ENSMUST00000031707.7|Aass|ENSMUSG00000029695.7|aminoadipate-semialdehyde synthase
mm10_v2_chr5_+_25246775_25246802	0.218128	Nanog	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr15_+_76246747_76246807	0.211682	Nanog	ENSMUST00000023225.6|Grina|ENSMUSG00000022564.6|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
mm10_v2_chr4_+_136310991_136311054	0.211644	Nanog	ENSMUST00000084219.5|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr5_+_33658550_33658563	0.207213	Nanog	ENSMUST00000152847.1|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr3_+_106113229_106113390	0.2001	Nanog	ENSMUST00000079132.5|Chia|ENSMUSG00000062778.6|chitinase, acidic 	ENSMUST00000139086.1|Chia|ENSMUSG00000062778.6|chitinase, acidic
mm10_v2_chr18_+_37518341_37518359	0.198089	Nanog	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr2_+_144527718_144527773	0.1944	Nanog	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr5_+_135806859_135806902	0.19245	Nanog	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr16_+_18811772_18811832	0.188984	Nanog	ENSMUST00000168822.1|Ufd1l|ENSMUSG00000005262.6|ubiquitin fusion degradation 1 like 	ENSMUST00000115578.3|Ufd1l|ENSMUSG00000005262.6|ubiquitin fusion degradation 1 like
mm10_v2_chr4_+_136310952_136310984	0.18281	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr9_-_52168111_52168111	0.182725	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr3_-_55055038_55055055	0.177723	Nanog	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr7_-_63212514_63212531	0.17716	Nanog	ENSMUST00000032738.5|Chrna7|ENSMUSG00000030525.7|cholinergic receptor, nicotinic, alpha polypeptide 7
mm10_v2_chr16_+_32877775_32877831	0.171709	Nanog	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr11_-_107337556_107337637	0.163986	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr6_-_29179584_29179584	0.151467	Nanog	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr8_-_35495487_35495545	0.150746	Nanog	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr9_+_109096659_109096710	0.13898	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr4_+_107968332_107968424	0.130202	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chrX_+_7822289_7822289	0.129064	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr3_-_54915867_54915887	0.128942	Nanog	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr4_+_136310936_136310947	0.123454	Nanog	ENSMUST00000131671.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr18_-_67245818_67245842	0.10682	Nanog	ENSMUST00000073054.3|Mppe1|ENSMUSG00000062526.3|metallophosphoesterase 1
mm10_v2_chr17_-_32800938_32800938	0.0986756	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr14_+_61607455_61607482	0.0913603	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr9_-_123678782_123678850	0.0886803	Nanog	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr7_-_25072287_25072369	0.0764153	Nanog	ENSMUST00000003468.8|Grik5|ENSMUSG00000003378.8|glutamate receptor, ionotropic, kainate 5 (gamma 2)
mm10_v2_chr11_+_75532099_75532125	0.0722841	Nanog	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr10_-_115362191_115362262	0.0715401	Nanog	ENSMUST00000092170.5|Tmem19|ENSMUSG00000069520.5|transmembrane protein 19
mm10_v2_chr1_+_93512079_93512125	0.0657187	Nanog	ENSMUST00000120301.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000041983.4|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000122402.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2
mm10_v2_chr7_+_28693032_28693144	0.0619459	Nanog	ENSMUST00000151227.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27 	ENSMUST00000108281.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr1_-_172082757_172082795	0.049741	Nanog	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr13_-_21716143_21716189	0.0432347	Nanog	ENSMUST00000091756.1|Hist1h2bl|ENSMUSG00000094338.1|histone cluster 1, H2bl
mm10_v2_chr1_+_153874335_153874354	0.0331827	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr6_+_38551786_38551851	0.0329225	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr4_-_126968124_126968154	0.0248619	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr12_-_83921809_83921898	0.0208149	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr15_-_97247287_97247315	0.0163034	Nanog	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr4_-_9669068_9669162	0.00770337	Nanog	ENSMUST00000078139.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108340.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084915.4|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108337.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084912.5|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000038564.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000146441.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000098275.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
