mm10_v2_chr13_-_71963713_71963729	3.07656	Nkx2-9	ENSMUST00000077337.8|Irx1|ENSMUSG00000060969.8|Iroquois related homeobox 1 (Drosophila)
mm10_v2_chr12_-_56536895_56536937	2.43816	Nkx2-9	ENSMUST00000001536.8|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr6_+_66896397_66896479	1.89414	Nkx2-9	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr3_+_122419772_122419787	1.72582	Nkx2-9	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr6_+_135362931_135362961	1.6823	Nkx2-9	ENSMUST00000032330.9|Emp1|ENSMUSG00000030208.9|epithelial membrane protein 1
mm10_v2_chr6_+_66896480_66896549	1.51257	Nkx2-9	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr15_-_88978958_88979007	1.39271	Nkx2-9	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chr11_+_88718442_88718645	1.31153	Nkx2-9	ENSMUST00000138007.1|C030037D09Rik|ENSMUSG00000087574.1|RIKEN cDNA C030037D09 gene
mm10_v2_chr5_-_62765618_62765656	1.24535	Nkx2-9	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr8_-_46294592_46294671	1.14675	Nkx2-9	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr18_+_73859366_73859402	1.12692	Nkx2-9	ENSMUST00000120033.1|Mro|ENSMUSG00000064036.9|maestro 	ENSMUST00000179472.1|Mro|ENSMUSG00000064036.9|maestro 	ENSMUST00000119239.1|Mro|ENSMUSG00000064036.9|maestro
mm10_v2_chr7_-_142576492_142576538	1.09895	Nkx2-9	ENSMUST00000140716.1|H19|ENSMUSG00000000031.9|H19 fetal liver mRNA
mm10_v2_chr13_+_72632597_72632625	1.05547	Nkx2-9	ENSMUST00000172353.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr12_+_24572276_24572308	1.04527	Nkx2-9	ENSMUST00000085553.5|Grhl1|ENSMUSG00000020656.9|grainyhead-like 1 (Drosophila)
mm10_v2_chr9_-_54647199_54647346	1.0386	Nkx2-9	ENSMUST00000128163.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr17_+_34263209_34263256	1.03794	Nkx2-9	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr11_+_117849223_117849251	0.991047	Nkx2-9	ENSMUST00000081387.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr6_-_101377342_101377388	0.949624	Nkx2-9	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr11_+_117849286_117849340	0.911002	Nkx2-9	ENSMUST00000093906.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr16_+_30065333_30065351	0.866459	Nkx2-9	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr10_+_88091070_88091076	0.842521	Nkx2-9	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr16_-_35490873_35490891	0.818024	Nkx2-9	ENSMUST00000023550.7|Pdia5|ENSMUSG00000022844.7|protein disulfide isomerase associated 5
mm10_v2_chrX_-_49788204_49788243	0.796882	Nkx2-9	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr16_-_33380717_33380755	0.794182	Nkx2-9	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr11_+_87699897_87699897	0.767845	Nkx2-9	ENSMUST00000040089.4|Rnf43|ENSMUSG00000034177.9|ring finger protein 43
mm10_v2_chr6_-_6217023_6217125	0.762474	Nkx2-9	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr1_-_128103016_128103053	0.703026	Nkx2-9	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr8_+_95633500_95633586	0.694545	Nkx2-9	ENSMUST00000034094.9|Gins3|ENSMUSG00000031669.9|GINS complex subunit 3 (Psf3 homolog)
mm10_v2_chr7_+_4925802_4925868	0.692436	Nkx2-9	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chr4_-_21685782_21685805	0.608193	Nkx2-9	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr6_-_37442095_37442154	0.607903	Nkx2-9	ENSMUST00000041093.5|Creb3l2|ENSMUSG00000038648.5|cAMP responsive element binding protein 3-like 2
mm10_v2_chr13_-_51567084_51567084	0.597423	Nkx2-9	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr11_+_108920342_108920358	0.572535	Nkx2-9	ENSMUST00000052915.7|Axin2|ENSMUSG00000000142.9|axin2
mm10_v2_chr2_-_129699833_129699850	0.565379	Nkx2-9	ENSMUST00000028883.5|Pdyn|ENSMUSG00000027400.5|prodynorphin
mm10_v2_chr14_+_53665912_53665946	0.562576	Nkx2-9	ENSMUST00000181768.1|Trav3-3|ENSMUSG00000094828.4|T cell receptor alpha variable 3-3
mm10_v2_chr1_-_181842334_181842401	0.56217	Nkx2-9	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr7_+_35186370_35186408	0.560342	Nkx2-9	ENSMUST00000135452.1|Slc7a10|ENSMUSG00000030495.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10 	ENSMUST00000001854.5|Slc7a10|ENSMUSG00000030495.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm10_v2_chr16_+_70313949_70314016	0.559183	Nkx2-9	ENSMUST00000163832.1|Gbe1|ENSMUSG00000022707.10|glucan (1,4-alpha-), branching enzyme 1
mm10_v2_chr11_-_100759740_100759754	0.510211	Nkx2-9	ENSMUST00000107361.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr2_+_173022360_173022438	0.472035	Nkx2-9	ENSMUST00000173997.1|Rbm38|ENSMUSG00000027510.11|RNA binding motif protein 38
mm10_v2_chr18_-_35662180_35662195	0.465489	Nkx2-9	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr13_+_75839868_75839881	0.464243	Nkx2-9	ENSMUST00000022082.7|Glrx|ENSMUSG00000021591.7|glutaredoxin
mm10_v2_chr16_-_59555752_59555752	0.458854	Nkx2-9	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr5_-_45639501_45639525	0.456733	Nkx2-9	ENSMUST00000016023.7|Fam184b|ENSMUSG00000015879.7|family with sequence similarity 184, member B
mm10_v2_chr1_+_87264345_87264370	0.453278	Nkx2-9	ENSMUST00000118687.1|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1 	ENSMUST00000027472.6|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1
mm10_v2_chr10_-_59221757_59221847	0.403237	Nkx2-9	ENSMUST00000165971.1|Sept10|ENSMUSG00000019917.9|septin 10
mm10_v2_chrX_+_42149288_42149412	0.375015	Nkx2-9	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chrX_+_42149534_42149683	0.371393	Nkx2-9	ENSMUST00000127618.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr17_-_25861456_25861510	0.367462	Nkx2-9	ENSMUST00000079461.8|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90 	ENSMUST00000176923.1|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90
mm10_v2_chr10_+_68723723_68723760	0.367131	Nkx2-9	ENSMUST00000080995.6|Tmem26|ENSMUSG00000060044.7|transmembrane protein 26
mm10_v2_chr17_+_46496753_46496809	0.366069	Nkx2-9	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr1_-_131097535_131097576	0.364838	Nkx2-9	ENSMUST00000016672.4|Mapkapk2|ENSMUSG00000016528.4|MAP kinase-activated protein kinase 2
mm10_v2_chr4_+_8690399_8690470	0.345388	Nkx2-9	ENSMUST00000127476.1|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr3_-_34351685_34351715	0.339055	Nkx2-9	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chrX_+_135993820_135993820	0.321781	Nkx2-9	ENSMUST00000058119.7|Arxes2|ENSMUSG00000048040.7|adipocyte-related X-chromosome expressed sequence 2
mm10_v2_chr2_+_80315461_80315511	0.319494	Nkx2-9	ENSMUST00000028392.7|Dnajc10|ENSMUSG00000027006.7|DnaJ (Hsp40) homolog, subfamily C, member 10
mm10_v2_chr9_-_56161051_56161075	0.309554	Nkx2-9	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chrX_+_56779437_56779565	0.307337	Nkx2-9	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr11_-_22982090_22982382	0.30171	Nkx2-9	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr4_-_72852622_72852648	0.288226	Nkx2-9	ENSMUST00000179234.1|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1 	ENSMUST00000078617.4|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1
mm10_v2_chr16_-_46155077_46155077	0.278469	Nkx2-9	ENSMUST00000059524.5|Gm4737|ENSMUSG00000048087.5|predicted gene 4737
mm10_v2_chr2_-_6130117_6130211	0.251208	Nkx2-9	ENSMUST00000126551.1|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000054254.5|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000114942.2|Proser2|ENSMUSG00000045319.7|proline and serine rich 2
mm10_v2_chr7_+_75610038_75610080	0.244578	Nkx2-9	ENSMUST00000125771.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr7_-_126676357_126676383	0.239587	Nkx2-9	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr7_+_30280094_30280188	0.235243	Nkx2-9	ENSMUST00000108187.1|Thap8|ENSMUSG00000013928.6|THAP domain containing 8 	ENSMUST00000014072.5|Thap8|ENSMUSG00000013928.6|THAP domain containing 8
mm10_v2_chr1_+_74153981_74154003	0.224854	Nkx2-9	ENSMUST00000027372.7|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2 	ENSMUST00000106899.2|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2
mm10_v2_chr7_-_19665005_19665030	0.215423	Nkx2-9	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr19_+_43752996_43753137	0.197387	Nkx2-9	ENSMUST00000026199.7|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000112047.3|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000153295.1|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli)
mm10_v2_chr5_+_67260696_67260711	0.187892	Nkx2-9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr10_+_94198955_94199043	0.17264	Nkx2-9	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr1_+_9545397_9545479	0.1723	Nkx2-9	ENSMUST00000072079.7|Rrs1|ENSMUSG00000061024.7|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm10_v2_chr15_-_10470490_10470527	0.166795	Nkx2-9	ENSMUST00000136591.1|Dnajc21|ENSMUSG00000044224.10|DnaJ (Hsp40) homolog, subfamily C, member 21
mm10_v2_chr3_-_153912966_153912990	0.164208	Nkx2-9	ENSMUST00000089950.4|Rabggtb|ENSMUSG00000038975.8|RAB geranylgeranyl transferase, b subunit
mm10_v2_chr8_+_123212857_123212911	0.160021	Nkx2-9	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chr17_+_69969073_69969086	0.155779	Nkx2-9	ENSMUST00000133983.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr4_+_44981389_44981461	0.145736	Nkx2-9	ENSMUST00000045078.6|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000128973.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000151148.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase
mm10_v2_chr9_+_75775355_75775378	0.143734	Nkx2-9	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chrM_+_7759_7927	0.142078	Nkx2-9	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr11_-_109363654_109363654	0.141566	Nkx2-9	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr16_+_24448082_24448153	0.141182	Nkx2-9	ENSMUST00000078988.2|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr1_-_63176653_63176822	0.137351	Nkx2-9	ENSMUST00000027111.8|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1 	ENSMUST00000168099.2|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm10_v2_chr1_-_135688094_135688149	0.13041	Nkx2-9	ENSMUST00000112103.1|Nav1|ENSMUSG00000090399.1|neuron navigator 1
mm10_v2_chr12_-_55080098_55080121	0.128759	Nkx2-9	ENSMUST00000021406.5|2700097O09Rik|ENSMUSG00000062198.4|RIKEN cDNA 2700097O09 gene
mm10_v2_chr7_+_70388305_70388305	0.124596	Nkx2-9	ENSMUST00000080024.5|B130024G19Rik|ENSMUSG00000062383.5|RIKEN cDNA B130024G19 gene
mm10_v2_chr2_+_80638798_80638834	0.11732	Nkx2-9	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chr15_-_79285502_79285537	0.116541	Nkx2-9	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chrX_-_102189371_102189394	0.104196	Nkx2-9	ENSMUST00000033683.7|Rps4x|ENSMUSG00000031320.9|ribosomal protein S4, X-linked
mm10_v2_chrX_+_13632769_13632798	0.099698	Nkx2-9	ENSMUST00000096492.3|Gpr34|ENSMUSG00000040229.5|G protein-coupled receptor 34
mm10_v2_chr16_-_76403673_76403717	0.094079	Nkx2-9	ENSMUST00000052867.7|Gm9843|ENSMUSG00000050299.7|predicted gene 9843
mm10_v2_chr4_+_108834601_108834617	0.086146	Nkx2-9	ENSMUST00000030296.8|Txndc12|ENSMUSG00000028567.8|thioredoxin domain containing 12 (endoplasmic reticulum)
mm10_v2_chr7_-_101921186_101921230	0.0758621	Nkx2-9	ENSMUST00000106965.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106968.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106967.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr3_-_33844255_33844313	0.0707454	Nkx2-9	ENSMUST00000029222.5|Ccdc39|ENSMUSG00000027676.5|coiled-coil domain containing 39
mm10_v2_chr14_-_46831984_46832057	0.0633251	Nkx2-9	ENSMUST00000181311.1|Gm10101|ENSMUSG00000061510.3|predicted gene 10101 	ENSMUST00000074862.2|Gm10101|ENSMUSG00000061510.3|predicted gene 10101
mm10_v2_chr15_+_58933774_58933836	0.0620156	Nkx2-9	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chrX_+_152001845_152001908	0.059174	Nkx2-9	ENSMUST00000026289.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10 	ENSMUST00000112617.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10
mm10_v2_chr12_-_71136611_71136701	0.0586649	Nkx2-9	ENSMUST00000021486.8|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9 	ENSMUST00000166120.1|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9
mm10_v2_chr2_+_181767040_181767073	0.0544638	Nkx2-9	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr3_+_138277489_138277495	0.0542288	Nkx2-9	ENSMUST00000004232.9|Adh1|ENSMUSG00000074207.4|alcohol dehydrogenase 1 (class I)
mm10_v2_chr9_+_74861888_74861921	0.0538806	Nkx2-9	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr2_+_140152043_140152043	0.0519607	Nkx2-9	ENSMUST00000104994.2|Gm17374|ENSMUSG00000078197.2|predicted gene, 17374
mm10_v2_chr6_+_122707489_122707608	0.0519517	Nkx2-9	ENSMUST00000112581.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000112580.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000012540.4|Nanog|ENSMUSG00000012396.6|Nanog homeobox
mm10_v2_chr16_+_32271468_32271523	0.0465909	Nkx2-9	ENSMUST00000093183.3|Smco1|ENSMUSG00000046345.4|single-pass membrane protein with coiled-coil domains 1
mm10_v2_chr4_-_119190005_119190016	0.0344106	Nkx2-9	ENSMUST00000138395.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein 	ENSMUST00000156746.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein
mm10_v2_chr13_-_107890059_107890073	0.0233787	Nkx2-9	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr13_+_63282142_63282142	0.0232678	Nkx2-9	ENSMUST00000159152.1|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr5_+_67260565_67260692	0.0228612	Nkx2-9	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr11_+_114668524_114668626	0.022385	Nkx2-9	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr4_-_41275091_41275144	0.0196162	Nkx2-9	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr6_+_35177610_35177629	0.0172272	Nkx2-9	ENSMUST00000170234.1|Nup205|ENSMUSG00000038759.9|nucleoporin 205
mm10_v2_chr4_-_141664063_141664170	0.0122764	Nkx2-9	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr6_-_87851011_87851060	0.00946951	Nkx2-9	ENSMUST00000113617.1|Cnbp|ENSMUSG00000030057.9|cellular nucleic acid binding protein
mm10_v2_chr17_-_35897371_35897431	0.00819754	Nkx2-9	ENSMUST00000148721.1|2310061I04Rik|ENSMUSG00000050705.9|RIKEN cDNA 2310061I04 gene
mm10_v2_chrX_+_7899350_7899362	0.00722736	Nkx2-9	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chr9_-_106887000_106887094	0.00397225	Nkx2-9	ENSMUST00000055843.7|Rbm15b|ENSMUSG00000045365.7|RNA binding motif protein 15B
mm10_v2_chr7_-_126475082_126475130	0.00122459	Nkx2-9	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
