mm10_v2_chrX_+_164269371_164269522	3.1282	Nkx3-1	ENSMUST00000145412.1|Pir|ENSMUSG00000031379.7|pirin 	ENSMUST00000033749.7|Pir|ENSMUSG00000031379.7|pirin
mm10_v2_chr9_+_78191966_78191999	2.89207	Nkx3-1	ENSMUST00000034903.5|Gsta4|ENSMUSG00000032348.5|glutathione S-transferase, alpha 4
mm10_v2_chr4_-_140774196_140774236	2.81862	Nkx3-1	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr9_-_20976762_20976793	2.34629	Nkx3-1	ENSMUST00000054197.5|S1pr2|ENSMUSG00000043895.5|sphingosine-1-phosphate receptor 2
mm10_v2_chr10_-_13324160_13324242	2.3262	Nkx3-1	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr19_+_20601958_20601974	2.08075	Nkx3-1	ENSMUST00000087638.3|Aldh1a1|ENSMUSG00000053279.6|aldehyde dehydrogenase family 1, subfamily A1
mm10_v2_chr13_+_51408618_51408781	2.03733	Nkx3-1	ENSMUST00000087978.3|S1pr3|ENSMUSG00000067586.3|sphingosine-1-phosphate receptor 3
mm10_v2_chr1_-_163289214_163289235	1.90907	Nkx3-1	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chrX_+_150547375_150547459	1.90395	Nkx3-1	ENSMUST00000066337.6|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid 	ENSMUST00000112715.1|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid
mm10_v2_chrX_-_75875101_75875182	1.89841	Nkx3-1	ENSMUST00000114059.3|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chrX_-_75874536_75874590	1.75679	Nkx3-1	ENSMUST00000033547.7|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr4_-_132757162_132757252	1.70449	Nkx3-1	ENSMUST00000030709.8|Smpdl3b|ENSMUSG00000028885.8|sphingomyelin phosphodiesterase, acid-like 3B
mm10_v2_chr10_-_13324250_13324318	1.54627	Nkx3-1	ENSMUST00000105543.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr10_+_94514825_94514922	1.54336	Nkx3-1	ENSMUST00000065060.5|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr10_-_12861735_12861735	1.54002	Nkx3-1	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr8_+_114133557_114133597	1.51646	Nkx3-1	ENSMUST00000073521.5|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7 	ENSMUST00000066514.6|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm10_v2_chr17_+_56304313_56304407	1.47487	Nkx3-1	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chr9_-_124493793_124493793	1.46177	Nkx3-1	ENSMUST00000178787.1|Gm21836|ENSMUSG00000096734.1|predicted gene, 21836
mm10_v2_chr8_+_114133635_114133662	1.45216	Nkx3-1	ENSMUST00000147605.1|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7 	ENSMUST00000134593.1|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm10_v2_chr3_-_104818539_104818572	1.43567	Nkx3-1	ENSMUST00000106774.1|Mov10|ENSMUSG00000002227.9|Moloney leukemia virus 10 	ENSMUST00000106775.1|Mov10|ENSMUSG00000002227.9|Moloney leukemia virus 10 	ENSMUST00000166979.1|Mov10|ENSMUSG00000002227.9|Moloney leukemia virus 10 	ENSMUST00000136148.1|Mov10|ENSMUSG00000002227.9|Moloney leukemia virus 10
mm10_v2_chr6_+_128362919_128363058	1.29581	Nkx3-1	ENSMUST00000073316.6|Foxm1|ENSMUSG00000001517.8|forkhead box M1
mm10_v2_chr3_+_14863495_14863538	1.27979	Nkx3-1	ENSMUST00000029076.4|Car3|ENSMUSG00000027559.4|carbonic anhydrase 3
mm10_v2_chrX_+_100625737_100625737	1.22522	Nkx3-1	ENSMUST00000048962.3|Kif4|ENSMUSG00000034311.3|kinesin family member 4
mm10_v2_chr1_-_175688353_175688353	1.16775	Nkx3-1	ENSMUST00000104984.1|Chml|ENSMUSG00000078185.1|choroideremia-like
mm10_v2_chr14_-_55788810_55788857	1.10993	Nkx3-1	ENSMUST00000022830.6|Ripk3|ENSMUSG00000022221.7|receptor-interacting serine-threonine kinase 3 	ENSMUST00000168716.1|Ripk3|ENSMUSG00000022221.7|receptor-interacting serine-threonine kinase 3 	ENSMUST00000178399.1|Ripk3|ENSMUSG00000022221.7|receptor-interacting serine-threonine kinase 3
mm10_v2_chr11_+_97685903_97685966	1.10912	Nkx3-1	ENSMUST00000107583.2|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3
mm10_v2_chr17_+_37270214_37270249	1.05298	Nkx3-1	ENSMUST00000038580.6|H2-M3|ENSMUSG00000016206.6|histocompatibility 2, M region locus 3
mm10_v2_chr9_+_72438534_72438578	1.03886	Nkx3-1	ENSMUST00000034746.8|Mns1|ENSMUSG00000032221.8|meiosis-specific nuclear structural protein 1
mm10_v2_chr7_-_127930066_127930122	1.03748	Nkx3-1	ENSMUST00000032988.8|Prss8|ENSMUSG00000030800.9|protease, serine, 8 (prostasin)
mm10_v2_chr7_+_43607169_43607225	1.02731	Nkx3-1	ENSMUST00000120935.1|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819 	ENSMUST00000127765.1|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819 	ENSMUST00000032661.7|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819
mm10_v2_chr5_-_8422582_8422693	1.00121	Nkx3-1	ENSMUST00000168500.1|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae) 	ENSMUST00000002368.9|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae)
mm10_v2_chr8_-_123318553_123318579	0.998113	Nkx3-1	ENSMUST00000118395.1|Fanca|ENSMUSG00000032815.9|Fanconi anemia, complementation group A 	ENSMUST00000035495.8|Fanca|ENSMUSG00000032815.9|Fanconi anemia, complementation group A
mm10_v2_chr17_-_25727364_25727426	0.984008	Nkx3-1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr9_+_77921908_77921932	0.966244	Nkx3-1	ENSMUST00000133757.1|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr9_+_72438519_72438533	0.926418	Nkx3-1	ENSMUST00000184604.1|Mns1|ENSMUSG00000032221.8|meiosis-specific nuclear structural protein 1
mm10_v2_chr13_-_99900645_99900683	0.917476	Nkx3-1	ENSMUST00000022150.6|Cartpt|ENSMUSG00000021647.6|CART prepropeptide
mm10_v2_chr18_+_60963517_60963603	0.907718	Nkx3-1	ENSMUST00000115295.2|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000039904.6|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr15_-_50882806_50882822	0.894043	Nkx3-1	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr5_-_149051300_149051390	0.877423	Nkx3-1	ENSMUST00000110505.1|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr18_+_82910863_82910885	0.849704	Nkx3-1	ENSMUST00000171238.1|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr11_-_21370452_21370485	0.832551	Nkx3-1	ENSMUST00000102875.4|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr2_+_3114220_3114225	0.828454	Nkx3-1	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr3_-_57575907_57575912	0.810397	Nkx3-1	ENSMUST00000120977.1|Wwtr1|ENSMUSG00000027803.8|WW domain containing transcription regulator 1
mm10_v2_chr14_-_54864055_54864158	0.809372	Nkx3-1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr4_-_156255327_156255344	0.795221	Nkx3-1	ENSMUST00000179919.1|Samd11|ENSMUSG00000096351.1|sterile alpha motif domain containing 11
mm10_v2_chrX_+_56454871_56454887	0.791961	Nkx3-1	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr12_+_52516077_52516077	0.779088	Nkx3-1	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr7_+_58658181_58658294	0.773361	Nkx3-1	ENSMUST00000168747.1|Atp10a|ENSMUSG00000025324.7|ATPase, class V, type 10A
mm10_v2_chr1_+_167598450_167598480	0.770524	Nkx3-1	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr11_-_3976778_3976778	0.765593	Nkx3-1	ENSMUST00000042344.1|4930556J24Rik|ENSMUSG00000034493.1|RIKEN cDNA 4930556J24 gene
mm10_v2_chr15_+_78597047_78597121	0.760485	Nkx3-1	ENSMUST00000043069.5|Cyth4|ENSMUSG00000018008.7|cytohesin 4
mm10_v2_chr11_-_45955183_45955193	0.751433	Nkx3-1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr17_-_79715034_79715047	0.731149	Nkx3-1	ENSMUST00000024894.1|Cyp1b1|ENSMUSG00000024087.3|cytochrome P450, family 1, subfamily b, polypeptide 1
mm10_v2_chr2_+_71873224_71873326	0.72269	Nkx3-1	ENSMUST00000006669.5|Pdk1|ENSMUSG00000006494.5|pyruvate dehydrogenase kinase, isoenzyme 1
mm10_v2_chr7_+_75455534_75455629	0.720383	Nkx3-1	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr4_+_3940747_3940854	0.717532	Nkx3-1	ENSMUST00000119403.1|Chchd7|ENSMUSG00000042198.6|coiled-coil-helix-coiled-coil-helix domain containing 7
mm10_v2_chr10_+_4432467_4432661	0.71701	Nkx3-1	ENSMUST00000095893.4|1700052N19Rik|ENSMUSG00000061759.9|RIKEN cDNA 1700052N19 gene 	ENSMUST00000118544.1|1700052N19Rik|ENSMUSG00000061759.9|RIKEN cDNA 1700052N19 gene 	ENSMUST00000117489.1|1700052N19Rik|ENSMUSG00000061759.9|RIKEN cDNA 1700052N19 gene
mm10_v2_chr10_-_128211788_128211823	0.713458	Nkx3-1	ENSMUST00000061995.8|Spryd4|ENSMUSG00000051346.8|SPRY domain containing 4
mm10_v2_chr1_-_174921813_174921827	0.71211	Nkx3-1	ENSMUST00000055294.3|Grem2|ENSMUSG00000050069.3|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm10_v2_chr3_-_57575760_57575836	0.709789	Nkx3-1	ENSMUST00000029380.7|Wwtr1|ENSMUSG00000027803.8|WW domain containing transcription regulator 1
mm10_v2_chrX_+_140456613_140456632	0.699621	Nkx3-1	ENSMUST00000033809.3|Prps1|ENSMUSG00000031432.3|phosphoribosyl pyrophosphate synthetase 1
mm10_v2_chr11_+_97685794_97685845	0.693838	Nkx3-1	ENSMUST00000107584.1|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3 	ENSMUST00000107585.2|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3
mm10_v2_chr19_-_61297069_61297069	0.691234	Nkx3-1	ENSMUST00000179346.1|Gm21060|ENSMUSG00000095993.1|predicted gene, 21060
mm10_v2_chr11_-_80080928_80081001	0.667517	Nkx3-1	ENSMUST00000103233.3|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3 	ENSMUST00000061283.8|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3
mm10_v2_chr9_+_105053239_105053259	0.633849	Nkx3-1	ENSMUST00000035177.8|Mrpl3|ENSMUSG00000032563.9|mitochondrial ribosomal protein L3 	ENSMUST00000149243.1|Mrpl3|ENSMUSG00000032563.9|mitochondrial ribosomal protein L3
mm10_v2_chr15_-_75048837_75048837	0.607048	Nkx3-1	ENSMUST00000179762.1|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1 	ENSMUST00000065408.9|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1
mm10_v2_chr5_-_86676346_86676369	0.595769	Nkx3-1	ENSMUST00000038448.6|Tmprss11bnl|ENSMUSG00000035861.6|transmembrane protease, serine 11b N terminal like
mm10_v2_chr1_-_75046639_75046639	0.594135	Nkx3-1	ENSMUST00000152855.1|Nhej1|ENSMUSG00000026162.6|nonhomologous end-joining factor 1
mm10_v2_chr1_+_167598384_167598411	0.591264	Nkx3-1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chrX_-_100625901_100625954	0.588492	Nkx3-1	ENSMUST00000059099.6|Pdzd11|ENSMUSG00000015668.7|PDZ domain containing 11
mm10_v2_chr17_-_47692466_47692466	0.583553	Nkx3-1	ENSMUST00000113300.1|Prickle4|ENSMUSG00000096549.3|prickle homolog 4 (Drosophila)
mm10_v2_chr7_+_100537192_100537232	0.572272	Nkx3-1	ENSMUST00000120454.1|Coa4|ENSMUSG00000044881.6|cytochrome c oxidase assembly factor 4
mm10_v2_chr2_+_163994960_163994960	0.571764	Nkx3-1	ENSMUST00000018470.3|Ywhab|ENSMUSG00000018326.3|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm10_v2_chr15_-_52478228_52478228	0.569334	Nkx3-1	ENSMUST00000081993.1|Gm10020|ENSMUSG00000057262.1|predicted pseudogene 10020
mm10_v2_chr9_+_40873981_40874127	0.562597	Nkx3-1	ENSMUST00000067375.3|Bsx|ENSMUSG00000054360.3|brain specific homeobox
mm10_v2_chr16_+_36934976_36935013	0.557019	Nkx3-1	ENSMUST00000023531.8|Hcls1|ENSMUSG00000022831.8|hematopoietic cell specific Lyn substrate 1
mm10_v2_chr2_+_79707780_79707927	0.545998	Nkx3-1	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chrY_+_17874741_17874741	0.544317	Nkx3-1	ENSMUST00000177639.1|Gm20831|ENSMUSG00000094325.1|predicted gene, 20831
mm10_v2_chr2_+_110597298_110597316	0.541271	Nkx3-1	ENSMUST00000045972.6|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12 	ENSMUST00000111026.2|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm10_v2_chr11_-_17008647_17008702	0.531583	Nkx3-1	ENSMUST00000102881.3|Plek|ENSMUSG00000020120.9|pleckstrin
mm10_v2_chr7_+_100537052_100537139	0.520498	Nkx3-1	ENSMUST00000054310.3|Coa4|ENSMUSG00000044881.6|cytochrome c oxidase assembly factor 4
mm10_v2_chr4_+_116708571_116708609	0.495332	Nkx3-1	ENSMUST00000106462.2|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163 	ENSMUST00000138305.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163 	ENSMUST00000125671.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163 	ENSMUST00000130828.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr18_-_12862624_12862714	0.479219	Nkx3-1	ENSMUST00000121808.1|Osbpl1a|ENSMUSG00000044252.11|oxysterol binding protein-like 1A 	ENSMUST00000118313.1|Osbpl1a|ENSMUSG00000044252.11|oxysterol binding protein-like 1A
mm10_v2_chr9_+_89199319_89199379	0.436105	Nkx3-1	ENSMUST00000138109.1|Mthfs|ENSMUSG00000066442.10|5, 10-methenyltetrahydrofolate synthetase
mm10_v2_chr2_-_84775420_84775444	0.434141	Nkx3-1	ENSMUST00000111641.1|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr2_-_84715160_84715218	0.431861	Nkx3-1	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr5_+_136919137_136919188	0.429738	Nkx3-1	ENSMUST00000181045.1|4933404O12Rik|ENSMUSG00000097908.1|RIKEN cDNA 4933404O12 gene
mm10_v2_chr8_-_23237623_23237681	0.419575	Nkx3-1	ENSMUST00000033950.5|Gins4|ENSMUSG00000031546.5|GINS complex subunit 4 (Sld5 homolog)
mm10_v2_chr1_-_53297001_53297023	0.419305	Nkx3-1	ENSMUST00000126590.1|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae) 	ENSMUST00000126412.1|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae) 	ENSMUST00000135246.1|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae) 	ENSMUST00000027267.7|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae)
mm10_v2_chr5_+_138161071_138161116	0.41149	Nkx3-1	ENSMUST00000019638.8|Cops6|ENSMUSG00000019494.8|COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana) 	ENSMUST00000110951.1|Cops6|ENSMUSG00000019494.8|COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)
mm10_v2_chr10_-_62486575_62486604	0.40652	Nkx3-1	ENSMUST00000092473.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr1_+_99772765_99772765	0.372578	Nkx3-1	ENSMUST00000086738.3|Cntnap5b|ENSMUSG00000067028.5|contactin associated protein-like 5B
mm10_v2_chr19_+_5406815_5406880	0.366491	Nkx3-1	ENSMUST00000174412.1|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene 	ENSMUST00000153017.2|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene
mm10_v2_chr7_+_139214661_139214681	0.363954	Nkx3-1	ENSMUST00000135509.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr17_-_65772686_65772752	0.347419	Nkx3-1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr5_+_142629537_142629593	0.338623	Nkx3-1	ENSMUST00000036872.9|Wipi2|ENSMUSG00000029578.9|WD repeat domain, phosphoinositide interacting 2 	ENSMUST00000110778.1|Wipi2|ENSMUSG00000029578.9|WD repeat domain, phosphoinositide interacting 2
mm10_v2_chr15_-_75111684_75111684	0.336265	Nkx3-1	ENSMUST00000100542.3|Ly6c2|ENSMUSG00000022584.8|lymphocyte antigen 6 complex, locus C2
mm10_v2_chr14_+_79515618_79515694	0.334935	Nkx3-1	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr1_+_161142706_161142767	0.318445	Nkx3-1	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr18_-_42262053_42262140	0.315319	Nkx3-1	ENSMUST00000097590.3|Lars|ENSMUSG00000024493.8|leucyl-tRNA synthetase
mm10_v2_chr9_+_78051938_78051958	0.312279	Nkx3-1	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr5_+_90367204_90367204	0.304481	Nkx3-1	ENSMUST00000068250.3|Gm9958|ENSMUSG00000054945.3|predicted gene 9958
mm10_v2_chr5_-_38491948_38491961	0.296005	Nkx3-1	ENSMUST00000129099.1|Slc2a9|ENSMUSG00000005107.7|solute carrier family 2 (facilitated glucose transporter), member 9
mm10_v2_chr12_+_17266545_17266601	0.294721	Nkx3-1	ENSMUST00000057288.5|Pdia6|ENSMUSG00000020571.6|protein disulfide isomerase associated 6
mm10_v2_chrX_-_111537947_111537964	0.290511	Nkx3-1	ENSMUST00000132319.1|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6 	ENSMUST00000123951.1|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6
mm10_v2_chr2_-_84775388_84775411	0.290103	Nkx3-1	ENSMUST00000023994.3|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr2_-_155582656_155582668	0.263105	Nkx3-1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr6_-_108185552_108185587	0.261112	Nkx3-1	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr7_-_126922887_126922926	0.247318	Nkx3-1	ENSMUST00000134134.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000119781.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000121612.2|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219
mm10_v2_chr8_+_36457548_36457574	0.242777	Nkx3-1	ENSMUST00000135373.1|6430573F11Rik|ENSMUSG00000039620.10|RIKEN cDNA 6430573F11 gene 	ENSMUST00000147525.1|6430573F11Rik|ENSMUSG00000039620.10|RIKEN cDNA 6430573F11 gene
mm10_v2_chr11_-_103697661_103697718	0.238178	Nkx3-1	ENSMUST00000107013.2|Gosr2|ENSMUSG00000020946.7|golgi SNAP receptor complex member 2
mm10_v2_chr5_+_28071356_28071372	0.238089	Nkx3-1	ENSMUST00000059155.10|Insig1|ENSMUSG00000045294.10|insulin induced gene 1
mm10_v2_chr6_+_88465409_88465482	0.23681	Nkx3-1	ENSMUST00000032165.9|Ruvbl1|ENSMUSG00000030079.9|RuvB-like protein 1
mm10_v2_chr5_-_21785115_21785251	0.232734	Nkx3-1	ENSMUST00000115193.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115192.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115195.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000030771.5|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2
mm10_v2_chr17_-_78418083_78418131	0.221188	Nkx3-1	ENSMUST00000070039.7|Fez2|ENSMUSG00000056121.9|fasciculation and elongation protein zeta 2 (zygin II) 	ENSMUST00000112487.1|Fez2|ENSMUSG00000056121.9|fasciculation and elongation protein zeta 2 (zygin II)
mm10_v2_chr11_-_69920581_69920630	0.219155	Nkx3-1	ENSMUST00000108610.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr6_-_69284319_69284319	0.194894	Nkx3-1	ENSMUST00000103349.1|Igkv4-69|ENSMUSG00000076548.1|immunoglobulin kappa variable 4-69
mm10_v2_chr1_-_156034800_156034817	0.188612	Nkx3-1	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr7_-_28598140_28598185	0.184803	Nkx3-1	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chr5_+_107597760_107597784	0.180296	Nkx3-1	ENSMUST00000112655.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2
mm10_v2_chr5_-_72559599_72559691	0.16749	Nkx3-1	ENSMUST00000074948.4|Nfxl1|ENSMUSG00000072889.3|nuclear transcription factor, X-box binding-like 1 	ENSMUST00000087216.5|Nfxl1|ENSMUSG00000072889.3|nuclear transcription factor, X-box binding-like 1
mm10_v2_chr4_+_32623985_32624084	0.167377	Nkx3-1	ENSMUST00000108178.1|Casp8ap2|ENSMUSG00000028282.6|caspase 8 associated protein 2
mm10_v2_chr7_+_110627650_110627669	0.161326	Nkx3-1	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr16_+_20611585_20611635	0.157119	Nkx3-1	ENSMUST00000115522.2|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000119224.1|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000079600.4|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000120394.1|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2
mm10_v2_chr1_-_162866502_162866616	0.14881	Nkx3-1	ENSMUST00000046049.7|Fmo1|ENSMUSG00000040181.8|flavin containing monooxygenase 1
mm10_v2_chr2_+_132846638_132846708	0.148131	Nkx3-1	ENSMUST00000028835.6|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000110122.3|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr6_+_145953429_145953584	0.143103	Nkx3-1	ENSMUST00000111701.1|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr10_+_90576678_90576691	0.108915	Nkx3-1	ENSMUST00000182284.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr14_-_104522615_104522707	0.0889263	Nkx3-1	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chrX_-_101222426_101222563	0.0830171	Nkx3-1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr10_+_100488289_100488289	0.0818248	Nkx3-1	ENSMUST00000164751.1|Cep290|ENSMUSG00000019971.9|centrosomal protein 290
mm10_v2_chr1_+_135133272_135133336	0.0638495	Nkx3-1	ENSMUST00000167080.1|Ptpn7|ENSMUSG00000031506.5|protein tyrosine phosphatase, non-receptor type 7
mm10_v2_chr5_+_21424934_21425013	0.0592491	Nkx3-1	ENSMUST00000056045.4|Fam185a|ENSMUSG00000047221.5|family with sequence similarity 185, member A
mm10_v2_chr10_-_115185015_115185029	0.0553746	Nkx3-1	ENSMUST00000006949.8|Tph2|ENSMUSG00000006764.8|tryptophan hydroxylase 2
mm10_v2_chr17_-_35162969_35163040	0.0552334	Nkx3-1	ENSMUST00000174805.1|Prrc2a|ENSMUSG00000024393.8|proline-rich coiled-coil 2A
mm10_v2_chr1_-_133906973_133907014	0.0528092	Nkx3-1	ENSMUST00000126123.1|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr8_-_106011422_106011486	0.0459444	Nkx3-1	ENSMUST00000058579.5|Ddx28|ENSMUSG00000045538.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
mm10_v2_chr7_-_25237849_25237856	0.0439365	Nkx3-1	ENSMUST00000071739.5|Gsk3a|ENSMUSG00000057177.6|glycogen synthase kinase 3 alpha 	ENSMUST00000108411.1|Gsk3a|ENSMUSG00000057177.6|glycogen synthase kinase 3 alpha
mm10_v2_chr16_+_20535475_20535546	0.0420617	Nkx3-1	ENSMUST00000090023.6|Ap2m1|ENSMUSG00000022841.8|adaptor-related protein complex 2, mu 1 subunit 	ENSMUST00000007216.8|Ap2m1|ENSMUSG00000022841.8|adaptor-related protein complex 2, mu 1 subunit
mm10_v2_chr11_-_106193511_106193584	0.0373853	Nkx3-1	ENSMUST00000007444.7|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha 	ENSMUST00000152008.1|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha 	ENSMUST00000103072.3|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha 	ENSMUST00000106867.1|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha
mm10_v2_chr10_-_14718191_14718228	0.0373204	Nkx3-1	ENSMUST00000020016.4|Gje1|ENSMUSG00000019867.4|gap junction protein, epsilon 1
mm10_v2_chr10_+_90576252_90576517	0.0334675	Nkx3-1	ENSMUST00000182427.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182053.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182113.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr12_-_100159601_100159672	0.0279969	Nkx3-1	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr9_-_103222063_103222149	0.0266654	Nkx3-1	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr4_+_62619515_62619582	0.0155408	Nkx3-1	ENSMUST00000084521.4|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3 	ENSMUST00000107424.1|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr9_-_43116514_43116572	0.0126138	Nkx3-1	ENSMUST00000061833.4|Tmem136|ENSMUSG00000048503.6|transmembrane protein 136
mm10_v2_chr8_+_69791163_69791257	0.0120132	Nkx3-1	ENSMUST00000034326.6|Atp13a1|ENSMUSG00000031862.10|ATPase type 13A1
mm10_v2_chr19_+_11469353_11469381	0.0117613	Nkx3-1	ENSMUST00000165310.1|Ms4a6c|ENSMUSG00000079419.3|membrane-spanning 4-domains, subfamily A, member 6C
mm10_v2_chr1_+_161142661_161142701	0.00510642	Nkx3-1	ENSMUST00000125018.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr15_-_74997634_74997634	0.00232045	Nkx3-1	ENSMUST00000023248.6|Ly6a|ENSMUSG00000075602.4|lymphocyte antigen 6 complex, locus A
