mm10_v2_chr2_-_36105271_36105434	1.41771	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr12_-_90969768_90969790	1.05644	Pax1_Pax9	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr2_+_178193075_178193099	0.934873	Pax1_Pax9	ENSMUST00000103065.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr15_-_84105662_84105754	0.588537	Pax1_Pax9	ENSMUST00000082365.5|Sult4a1|ENSMUSG00000018865.8|sulfotransferase family 4A, member 1
mm10_v2_chr18_+_69344503_69344530	0.564888	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr4_-_110286581_110286617	0.484558	Pax1_Pax9	ENSMUST00000138972.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr19_-_7105729_7105729	0.36274	Pax1_Pax9	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr17_-_24205514_24205562	0.325837	Pax1_Pax9	ENSMUST00000097376.3|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000168410.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000167791.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000040474.7|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24
mm10_v2_chr2_+_84734050_84734107	0.240659	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr13_-_62607499_62607499	0.205715	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr13_-_62777089_62777089	0.202998	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr17_+_27909337_27909409	0.198829	Pax1_Pax9	ENSMUST00000114842.1|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000025058.7|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000088027.5|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1
mm10_v2_chr9_-_97111117_97111159	0.185436	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr11_+_83753689_83753722	0.182494	Pax1_Pax9	ENSMUST00000001002.7|Heatr6|ENSMUSG00000000976.7|HEAT repeat containing 6
mm10_v2_chr2_-_33468493_33468572	0.167323	Pax1_Pax9	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr3_-_117360876_117360876	0.16674	Pax1_Pax9	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr13_-_62520451_62520544	0.163406	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr7_-_24299310_24299368	0.144842	Pax1_Pax9	ENSMUST00000145131.1|Zfp61|ENSMUSG00000050605.11|zinc finger protein 61
mm10_v2_chr5_-_93206428_93206470	0.143292	Pax1_Pax9	ENSMUST00000144514.1|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr19_+_8840519_8840549	0.138294	Pax1_Pax9	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chrX_+_86191764_86191782	0.0845573	Pax1_Pax9	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr8_-_94838255_94838358	0.0745131	Pax1_Pax9	ENSMUST00000161762.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1 	ENSMUST00000162538.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1
mm10_v2_chr9_+_21337828_21337859	0.0661754	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr9_+_96196246_96196280	0.0560984	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr5_-_93206489_93206498	0.0295715	Pax1_Pax9	ENSMUST00000058550.8|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr5_-_31291026_31291143	0.0218141	Pax1_Pax9	ENSMUST00000041565.7|Ift172|ENSMUSG00000038564.7|intraflagellar transport 172
