mm10_v2_chr13_+_94875600_94875611	4.70959	Rara	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr6_+_30723541_30723552	3.21498	Rara	ENSMUST00000115127.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr4_-_141599835_141600032	3.02307	Rara	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr17_+_34593388_34593417	2.73052	Rara	ENSMUST00000174532.1|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr11_+_98960412_98960485	2.15596	Rara	ENSMUST00000107473.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr4_+_150853919_150854050	2.05921	Rara	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr14_-_16575456_16575501	1.73006	Rara	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chr14_+_55618023_55618037	1.50799	Rara	ENSMUST00000002395.7|Rec8|ENSMUSG00000002324.7|REC8 homolog (yeast)
mm10_v2_chr12_-_108893197_108893215	1.44136	Rara	ENSMUST00000161154.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase 	ENSMUST00000161410.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr2_+_5845243_5845311	1.39213	Rara	ENSMUST00000127116.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr4_-_128609981_128610098	1.34908	Rara	ENSMUST00000141040.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000147876.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000097877.2|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20
mm10_v2_chr1_-_175692624_175692776	1.33917	Rara	ENSMUST00000027809.7|Opn3|ENSMUSG00000026525.9|opsin 3
mm10_v2_chr11_+_94629741_94629834	1.29226	Rara	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr4_+_48045144_48045160	1.14349	Rara	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr11_-_5915124_5915141	1.03716	Rara	ENSMUST00000109823.2|Gck|ENSMUSG00000041798.9|glucokinase 	ENSMUST00000109822.1|Gck|ENSMUSG00000041798.9|glucokinase
mm10_v2_chr4_+_32238950_32238964	0.956914	Rara	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr12_+_87026564_87026616	0.943913	Rara	ENSMUST00000110187.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c 	ENSMUST00000156162.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c
mm10_v2_chr2_-_5012716_5012791	0.923606	Rara	ENSMUST00000027980.7|Mcm10|ENSMUSG00000026669.8|minichromosome maintenance deficient 10 (S. cerevisiae)
mm10_v2_chr2_+_5845017_5845062	0.897042	Rara	ENSMUST00000026927.3|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENSMUST00000179748.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr6_-_6217023_6217125	0.874788	Rara	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr3_-_36475688_36475843	0.819893	Rara	ENSMUST00000029266.8|Anxa5|ENSMUSG00000027712.8|annexin A5
mm10_v2_chr7_+_120635176_120635251	0.791005	Rara	ENSMUST00000033176.5|Uqcrc2|ENSMUSG00000030884.5|ubiquinol cytochrome c reductase core protein 2
mm10_v2_chr8_-_94876269_94876321	0.778042	Rara	ENSMUST00000046461.7|Dok4|ENSMUSG00000040631.7|docking protein 4
mm10_v2_chr19_-_7241216_7241226	0.749929	Rara	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr2_+_26319741_26319773	0.749414	Rara	ENSMUST00000066889.6|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chrX_+_106187100_106187179	0.734231	Rara	ENSMUST00000081593.6|Pgk1|ENSMUSG00000062070.6|phosphoglycerate kinase 1
mm10_v2_chr14_+_58070547_58070547	0.684262	Rara	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr11_-_50953745_50953768	0.653129	Rara	ENSMUST00000162420.1|Prop1|ENSMUSG00000044542.3|paired like homeodomain factor 1 	ENSMUST00000051159.2|Prop1|ENSMUSG00000044542.3|paired like homeodomain factor 1
mm10_v2_chr4_+_41348996_41349064	0.6432	Rara	ENSMUST00000072866.5|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1 	ENSMUST00000108060.3|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1
mm10_v2_chr6_+_91157373_91157397	0.590513	Rara	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chr11_-_97700327_97700497	0.586748	Rara	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr8_+_106150359_106150417	0.564085	Rara	ENSMUST00000034377.6|Pla2g15|ENSMUSG00000031903.6|phospholipase A2, group XV
mm10_v2_chr11_+_4986824_4986894	0.545867	Rara	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr2_-_5845164_5845164	0.533072	Rara	ENSMUST00000043864.3|Cdc123|ENSMUSG00000039128.7|cell division cycle 123
mm10_v2_chrX_+_74254736_74254752	0.506871	Rara	ENSMUST00000096424.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr8_-_119778380_119778431	0.5014	Rara	ENSMUST00000049156.5|Tldc1|ENSMUSG00000034105.8|TBC/LysM associated domain containing 1
mm10_v2_chr14_+_76488436_76488541	0.499844	Rara	ENSMUST00000101618.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr7_-_17056669_17056696	0.464306	Rara	ENSMUST00000037762.4|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit
mm10_v2_chr4_+_141444654_141444714	0.46198	Rara	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr2_-_34754364_34754561	0.450962	Rara	ENSMUST00000142436.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000113099.3|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000028224.8|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chrX_+_74254782_74254872	0.438497	Rara	ENSMUST00000119197.1|Emd|ENSMUSG00000001964.8|emerin 	ENSMUST00000088313.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr17_-_32388885_32389116	0.43669	Rara	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr3_+_152210458_152210534	0.434157	Rara	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr10_+_19951055_19951055	0.414625	Rara	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr9_-_109074049_109074140	0.40823	Rara	ENSMUST00000161521.1|Atrip|ENSMUSG00000025646.2|ATR interacting protein 	ENSMUST00000045011.2|Atrip|ENSMUSG00000025646.2|ATR interacting protein
mm10_v2_chrX_-_75874536_75874590	0.395631	Rara	ENSMUST00000033547.7|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr10_+_79910856_79910856	0.387668	Rara	ENSMUST00000181321.1|Gm26602|ENSMUSG00000097854.1|predicted gene, 26602
mm10_v2_chr6_+_18848571_18848582	0.383029	Rara	ENSMUST00000056398.8|Naa38|ENSMUSG00000044155.8|N(alpha)-acetyltransferase 38, NatC auxiliary subunit
mm10_v2_chr5_+_53590215_53590351	0.3769	Rara	ENSMUST00000037618.6|Rbpj|ENSMUSG00000039191.6|recombination signal binding protein for immunoglobulin kappa J region
mm10_v2_chr2_+_131262469_131262563	0.322103	Rara	ENSMUST00000150843.1|Pank2|ENSMUSG00000037514.11|pantothenate kinase 2
mm10_v2_chr2_+_181365384_181365414	0.275237	Rara	ENSMUST00000108807.2|Zgpat|ENSMUSG00000027582.10|zinc finger, CCCH-type with G patch domain
mm10_v2_chr14_+_20674311_20674371	0.274003	Rara	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr2_-_181365306_181365404	0.2699	Rara	ENSMUST00000108808.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000170190.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000127988.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1
mm10_v2_chr6_+_115601907_115601940	0.259805	Rara	ENSMUST00000000449.7|Mkrn2|ENSMUSG00000000439.8|makorin, ring finger protein, 2
mm10_v2_chr7_-_141429351_141429429	0.250352	Rara	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr9_-_43105718_43105793	0.214142	Rara	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr1_+_134037490_134037530	0.213546	Rara	ENSMUST00000162779.1|Fmod|ENSMUSG00000041559.7|fibromodulin
mm10_v2_chr7_+_45873127_45873187	0.202156	Rara	ENSMUST00000107718.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr3_-_95015214_95015246	0.19719	Rara	ENSMUST00000128438.1|Zfp687|ENSMUSG00000019338.7|zinc finger protein 687 	ENSMUST00000149747.1|Zfp687|ENSMUSG00000019338.7|zinc finger protein 687 	ENSMUST00000019482.1|Zfp687|ENSMUSG00000019338.7|zinc finger protein 687
mm10_v2_chr10_-_89257790_89257831	0.195092	Rara	ENSMUST00000045601.7|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr7_-_141429433_141429491	0.192674	Rara	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr1_-_36369173_36369186	0.188509	Rara	ENSMUST00000010597.3|Kansl3|ENSMUSG00000010453.6|KAT8 regulatory NSL complex subunit 3
mm10_v2_chr7_+_17150210_17150400	0.175704	Rara	ENSMUST00000108491.1|Ceacam3|ENSMUSG00000053228.6|carcinoembryonic antigen-related cell adhesion molecule 3 	ENSMUST00000065540.5|Ceacam3|ENSMUSG00000053228.6|carcinoembryonic antigen-related cell adhesion molecule 3
mm10_v2_chr3_-_54915867_54915887	0.130203	Rara	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chrX_-_59567348_59567472	0.116997	Rara	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr8_+_11556061_11556099	0.093231	Rara	ENSMUST00000054399.4|Ing1|ENSMUSG00000045969.7|inhibitor of growth family, member 1
mm10_v2_chr13_+_49421229_49421311	0.0827165	Rara	ENSMUST00000021817.8|Ippk|ENSMUSG00000021385.9|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm10_v2_chr7_+_45872772_45872857	0.0788384	Rara	ENSMUST00000002855.5|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 	ENSMUST00000107719.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr9_+_54586450_54586512	0.0195414	Rara	ENSMUST00000167866.1|Idh3a|ENSMUSG00000032279.10|isocitrate dehydrogenase 3 (NAD+) alpha
mm10_v2_chr1_-_163403627_163403679	0.0177676	Rara	ENSMUST00000045138.4|Gorab|ENSMUSG00000040124.4|golgin, RAB6-interacting
mm10_v2_chr4_-_152318458_152318654	0.00630177	Rara	ENSMUST00000170820.1|Rnf207|ENSMUSG00000058498.6|ring finger protein 207 	ENSMUST00000076183.5|Rnf207|ENSMUSG00000058498.6|ring finger protein 207
