mm10_v2_chr10_-_127534540_127534566	4.04864	Smad4	ENSMUST00000095266.2|Nxph4|ENSMUSG00000040258.6|neurexophilin 4
mm10_v2_chr13_-_22042949_22042978	3.66309	Smad4	ENSMUST00000091741.4|Hist1h2ag|ENSMUSG00000069301.4|histone cluster 1, H2ag
mm10_v2_chr19_+_5740885_5740904	2.86662	Smad4	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr13_-_21832194_21832198	2.47327	Smad4	ENSMUST00000102979.1|Hist1h4n|ENSMUSG00000069305.3|histone cluster 1, H4n
mm10_v2_chr11_-_95514570_95514707	2.47158	Smad4	ENSMUST00000058866.7|Nxph3|ENSMUSG00000046719.7|neurexophilin 3
mm10_v2_chr4_-_148130678_148130706	2.09184	Smad4	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr13_+_23581563_23581598	1.93125	Smad4	ENSMUST00000102968.1|Hist1h4d|ENSMUSG00000061482.6|histone cluster 1, H4d
mm10_v2_chr7_-_70360593_70360746	1.92527	Smad4	ENSMUST00000032768.7|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr7_-_27181149_27181162	1.91827	Smad4	ENSMUST00000071986.6|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity 	ENSMUST00000121848.1|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity
mm10_v2_chr3_+_127633134_127633140	1.64017	Smad4	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr14_-_25903100_25903100	1.51127	Smad4	ENSMUST00000052286.8|Plac9a|ENSMUSG00000095304.2|placenta specific 9a
mm10_v2_chr13_+_22043189_22043214	1.43592	Smad4	ENSMUST00000110452.1|Hist1h2bj|ENSMUSG00000069300.3|histone cluster 1, H2bj
mm10_v2_chr18_+_57133065_57133090	1.34838	Smad4	ENSMUST00000075770.6|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr11_-_89302545_89302567	1.25398	Smad4	ENSMUST00000061728.3|Nog|ENSMUSG00000048616.3|noggin
mm10_v2_chr3_-_96220880_96220899	1.17807	Smad4	ENSMUST00000090782.3|Hist2h2ac|ENSMUSG00000068855.3|histone cluster 2, H2ac
mm10_v2_chr13_-_23551648_23551672	1.14911	Smad4	ENSMUST00000102971.1|Hist1h4f|ENSMUSG00000069274.3|histone cluster 1, H4f
mm10_v2_chr10_-_92164666_92164754	1.14551	Smad4	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr10_+_75589363_75589390	1.10425	Smad4	ENSMUST00000072217.2|Ggt5|ENSMUSG00000006344.10|gamma-glutamyltransferase 5
mm10_v2_chr13_+_21735055_21735070	1.10418	Smad4	ENSMUST00000087714.4|Hist1h4j|ENSMUSG00000067455.4|histone cluster 1, H4j
mm10_v2_chr6_+_54040078_54040091	1.08054	Smad4	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr2_+_27079371_27079385	1.06412	Smad4	ENSMUST00000091233.6|Adamtsl2|ENSMUSG00000036040.8|ADAMTS-like 2
mm10_v2_chr6_+_54039558_54039575	1.05733	Smad4	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr13_+_23531044_23531088	1.02973	Smad4	ENSMUST00000102972.3|Hist1h4h|ENSMUSG00000060981.5|histone cluster 1, H4h
mm10_v2_chr4_+_97772734_97772848	0.978696	Smad4	ENSMUST00000152023.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr17_+_75178911_75178961	0.977398	Smad4	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr17_-_29888570_29888629	0.967304	Smad4	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr17_+_75178797_75178824	0.965186	Smad4	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr19_+_46328179_46328205	0.888717	Smad4	ENSMUST00000026256.2|Fbxl15|ENSMUSG00000025226.5|F-box and leucine-rich repeat protein 15 	ENSMUST00000177667.1|Fbxl15|ENSMUSG00000025226.5|F-box and leucine-rich repeat protein 15
mm10_v2_chr1_-_173367638_173367695	0.836766	Smad4	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr8_+_54954728_54954820	0.833019	Smad4	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr3_-_116968969_116969004	0.823916	Smad4	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr12_+_103314944_103314962	0.774702	Smad4	ENSMUST00000179363.1|Fam181a|ENSMUSG00000096753.1|family with sequence similarity 181, member A
mm10_v2_chr14_+_57826210_57826272	0.751976	Smad4	ENSMUST00000022538.3|Mrp63|ENSMUSG00000021967.3|mitochondrial ribosomal protein 63
mm10_v2_chr1_+_177445660_177445821	0.747085	Smad4	ENSMUST00000077225.6|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr13_-_23934156_23934225	0.746647	Smad4	ENSMUST00000052776.2|Hist1h2ba|ENSMUSG00000050799.2|histone cluster 1, H2ba
mm10_v2_chr10_+_33905015_33905111	0.727813	Smad4	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr6_+_15720654_15720747	0.719998	Smad4	ENSMUST00000101663.3|Mdfic|ENSMUSG00000041390.12|MyoD family inhibitor domain containing
mm10_v2_chr14_-_54577578_54577661	0.718932	Smad4	ENSMUST00000054487.8|Ajuba|ENSMUSG00000022178.10|ajuba LIM protein
mm10_v2_chrX_+_56779437_56779565	0.698564	Smad4	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr1_+_187997821_187997834	0.695938	Smad4	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr1_+_187997835_187997882	0.688801	Smad4	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr15_+_39076885_39076938	0.683166	Smad4	ENSMUST00000067072.3|Cthrc1|ENSMUSG00000054196.6|collagen triple helix repeat containing 1
mm10_v2_chr7_+_45216671_45216695	0.670399	Smad4	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr6_+_54039935_54040039	0.660753	Smad4	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr2_-_128967725_128967725	0.656657	Smad4	ENSMUST00000099385.2|Gm10762|ENSMUSG00000074807.2|predicted gene 10762
mm10_v2_chr10_-_42583628_42583639	0.644474	Smad4	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr14_+_12189943_12190001	0.625459	Smad4	ENSMUST00000119888.1|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr7_+_45215753_45215852	0.619068	Smad4	ENSMUST00000033060.6|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000155313.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000107801.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr2_+_152736244_152736261	0.607084	Smad4	ENSMUST00000038368.8|Id1|ENSMUSG00000042745.9|inhibitor of DNA binding 1 	ENSMUST00000109824.1|Id1|ENSMUSG00000042745.9|inhibitor of DNA binding 1
mm10_v2_chr15_+_81936753_81936839	0.599412	Smad4	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chrX_+_99136119_99136138	0.592699	Smad4	ENSMUST00000052839.6|Efnb1|ENSMUSG00000031217.8|ephrin B1
mm10_v2_chr15_+_81936911_81936982	0.582356	Smad4	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr4_-_95052170_95052181	0.562308	Smad4	ENSMUST00000058555.2|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr19_-_23448322_23448350	0.55162	Smad4	ENSMUST00000036069.6|Mamdc2|ENSMUSG00000033207.6|MAM domain containing 2
mm10_v2_chr8_-_34146974_34147033	0.542111	Smad4	ENSMUST00000033910.8|Leprotl1|ENSMUSG00000031513.8|leptin receptor overlapping transcript-like 1
mm10_v2_chr5_+_19907502_19907551	0.536615	Smad4	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr5_-_137741102_137741185	0.533436	Smad4	ENSMUST00000149512.1|Nyap1|ENSMUSG00000045348.9|neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1
mm10_v2_chr4_+_148130883_148130915	0.523288	Smad4	ENSMUST00000084129.2|Mad2l2|ENSMUSG00000029003.5|MAD2 mitotic arrest deficient-like 2
mm10_v2_chr18_-_35498856_35498925	0.519883	Smad4	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr17_-_70851710_70851738	0.507815	Smad4	ENSMUST00000166395.2|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr10_+_91082940_91083028	0.50344	Smad4	ENSMUST00000020150.3|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chr10_+_80150448_80150482	0.495859	Smad4	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr8_+_45658273_45658298	0.475619	Smad4	ENSMUST00000153798.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr4_+_127172866_127172898	0.465837	Smad4	ENSMUST00000106094.2|Dlgap3|ENSMUSG00000042388.8|discs, large (Drosophila) homolog-associated protein 3
mm10_v2_chr6_-_83775767_83775826	0.46272	Smad4	ENSMUST00000014892.6|Tex261|ENSMUSG00000014748.7|testis expressed gene 261
mm10_v2_chr12_+_76404168_76404264	0.451219	Smad4	ENSMUST00000080449.5|Hspa2|ENSMUSG00000059970.6|heat shock protein 2
mm10_v2_chrX_+_10485121_10485163	0.442619	Smad4	ENSMUST00000076354.6|Tspan7|ENSMUSG00000058254.6|tetraspanin 7 	ENSMUST00000115526.1|Tspan7|ENSMUSG00000058254.6|tetraspanin 7
mm10_v2_chr5_-_92278155_92278171	0.441661	Smad4	ENSMUST00000159345.1|Naaa|ENSMUSG00000029413.8|N-acylethanolamine acid amidase 	ENSMUST00000113102.3|Naaa|ENSMUSG00000029413.8|N-acylethanolamine acid amidase
mm10_v2_chr6_+_108660772_108660874	0.441253	Smad4	ENSMUST00000163617.1|Bhlhe40|ENSMUSG00000030103.5|basic helix-loop-helix family, member e40
mm10_v2_chr18_-_84086379_84086404	0.437863	Smad4	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr3_-_116968827_116968858	0.436698	Smad4	ENSMUST00000119557.1|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr4_+_130055010_130055047	0.433477	Smad4	ENSMUST00000123617.1|Col16a1|ENSMUSG00000040690.9|collagen, type XVI, alpha 1
mm10_v2_chr8_-_109251698_109251728	0.427171	Smad4	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr7_+_82867327_82867357	0.426566	Smad4	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr2_-_173276144_173276189	0.418464	Smad4	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr14_-_57826128_57826180	0.414528	Smad4	ENSMUST00000022536.2|Ska3|ENSMUSG00000021965.2|spindle and kinetochore associated complex subunit 3
mm10_v2_chr7_-_30362772_30362772	0.412011	Smad4	ENSMUST00000046351.5|Lrfn3|ENSMUSG00000036957.7|leucine rich repeat and fibronectin type III domain containing 3
mm10_v2_chr11_-_5261558_5261637	0.410465	Smad4	ENSMUST00000020662.8|Kremen1|ENSMUSG00000020393.10|kringle containing transmembrane protein 1
mm10_v2_chr3_+_96221111_96221134	0.406033	Smad4	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chr4_+_133011506_133011546	0.404448	Smad4	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr5_-_24601961_24602012	0.403049	Smad4	ENSMUST00000030791.7|Smarcd3|ENSMUSG00000028949.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm10_v2_chr11_-_3931960_3932159	0.396301	Smad4	ENSMUST00000109990.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000020710.4|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109989.3|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109991.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109993.2|Tcn2|ENSMUSG00000020432.6|transcobalamin 2
mm10_v2_chr14_-_31168587_31168641	0.39082	Smad4	ENSMUST00000036618.7|Stab1|ENSMUSG00000042286.7|stabilin 1
mm10_v2_chr11_-_3931789_3931816	0.367064	Smad4	ENSMUST00000109992.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109988.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2
mm10_v2_chr1_+_152399824_152399881	0.365514	Smad4	ENSMUST00000044311.8|Colgalt2|ENSMUSG00000032649.8|collagen beta(1-O)galactosyltransferase 2
mm10_v2_chr2_+_128967383_128967443	0.361305	Smad4	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr4_-_117178726_117178754	0.358458	Smad4	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr16_-_55283237_55283287	0.354723	Smad4	ENSMUST00000036412.3|Zpld1|ENSMUSG00000064310.4|zona pellucida like domain containing 1
mm10_v2_chr4_+_116221633_116221661	0.354293	Smad4	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr7_+_4690760_4690928	0.351477	Smad4	ENSMUST00000048248.7|Brsk1|ENSMUSG00000035390.10|BR serine/threonine kinase 1
mm10_v2_chr3_+_89436699_89436734	0.347469	Smad4	ENSMUST00000038942.3|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1 	ENSMUST00000130858.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1
mm10_v2_chr4_+_128688726_128688795	0.332617	Smad4	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr7_-_45870928_45870986	0.327539	Smad4	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chrX_+_136707976_136708040	0.319908	Smad4	ENSMUST00000055104.5|Tceal1|ENSMUSG00000049536.5|transcription elongation factor A (SII)-like 1
mm10_v2_chr19_-_40271506_40271616	0.31799	Smad4	ENSMUST00000068439.6|Pdlim1|ENSMUSG00000055044.6|PDZ and LIM domain 1 (elfin)
mm10_v2_chr3_+_88607742_88607791	0.315468	Smad4	ENSMUST00000175903.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr5_+_92683625_92683648	0.306166	Smad4	ENSMUST00000168878.1|Shroom3|ENSMUSG00000029381.9|shroom family member 3
mm10_v2_chr11_-_3504766_3504833	0.299992	Smad4	ENSMUST00000044507.5|Inpp5j|ENSMUSG00000034570.6|inositol polyphosphate 5-phosphatase J
mm10_v2_chr7_+_110221697_110221708	0.296373	Smad4	ENSMUST00000033325.7|Swap70|ENSMUSG00000031015.7|SWA-70 protein
mm10_v2_chr9_+_57940104_57940120	0.291173	Smad4	ENSMUST00000043059.7|Sema7a|ENSMUSG00000038264.7|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
mm10_v2_chr5_+_111417263_111417442	0.287324	Smad4	ENSMUST00000094463.4|Mn1|ENSMUSG00000070576.4|meningioma 1
mm10_v2_chr11_-_69413675_69413675	0.28709	Smad4	ENSMUST00000094077.4|Kdm6b|ENSMUSG00000018476.7|KDM1 lysine (K)-specific demethylase 6B
mm10_v2_chrX_-_72274747_72274803	0.284877	Smad4	ENSMUST00000064780.3|Gabre|ENSMUSG00000031340.8|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
mm10_v2_chr7_+_24862193_24862213	0.280587	Smad4	ENSMUST00000052897.4|Gm9844|ENSMUSG00000050347.5|predicted pseudogene 9844 	ENSMUST00000170837.2|Gm9844|ENSMUSG00000091955.2|predicted pseudogene 9844
mm10_v2_chr15_-_98728120_98728198	0.275831	Smad4	ENSMUST00000003445.6|Fkbp11|ENSMUSG00000003355.6|FK506 binding protein 11
mm10_v2_chr19_+_4097392_4097415	0.267174	Smad4	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chr8_-_47352348_47352367	0.257416	Smad4	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr18_-_52529847_52529890	0.25473	Smad4	ENSMUST00000171470.1|Lox|ENSMUSG00000024529.7|lysyl oxidase
mm10_v2_chr5_+_19907774_19907861	0.248369	Smad4	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr17_+_34597852_34597894	0.245369	Smad4	ENSMUST00000174496.2|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor 	ENSMUST00000015596.3|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor 	ENSMUST00000173992.1|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor
mm10_v2_chr1_-_16770138_16770159	0.244093	Smad4	ENSMUST00000071842.8|Gm5828|ENSMUSG00000091020.2|predicted gene 5828
mm10_v2_chr6_+_147032528_147032547	0.242978	Smad4	ENSMUST00000036194.4|Rep15|ENSMUSG00000040121.4|RAB15 effector protein
mm10_v2_chr17_-_25081138_25081201	0.238364	Smad4	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr5_+_30913398_30913403	0.236086	Smad4	ENSMUST00000031055.5|Emilin1|ENSMUSG00000029163.7|elastin microfibril interfacer 1
mm10_v2_chr17_+_46646225_46646272	0.229414	Smad4	ENSMUST00000002844.7|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2 	ENSMUST00000113429.1|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2 	ENSMUST00000113430.1|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2
mm10_v2_chr5_+_32611171_32611245	0.227094	Smad4	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr7_+_101421691_101421726	0.220715	Smad4	ENSMUST00000163751.2|Pde2a|ENSMUSG00000030653.10|phosphodiesterase 2A, cGMP-stimulated 	ENSMUST00000084894.7|Pde2a|ENSMUSG00000030653.10|phosphodiesterase 2A, cGMP-stimulated 	ENSMUST00000166652.1|Pde2a|ENSMUSG00000030653.10|phosphodiesterase 2A, cGMP-stimulated
mm10_v2_chr6_-_138422898_138422999	0.201824	Smad4	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr5_+_7179299_7179365	0.20146	Smad4	ENSMUST00000179460.1|Tubb4b-ps1|ENSMUSG00000095159.1|tubulin, beta 4B class IVB, pseudogene 1
mm10_v2_chr11_+_60699718_60699750	0.195933	Smad4	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr7_-_119895697_119895752	0.194976	Smad4	ENSMUST00000059851.6|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr7_+_101394361_101394436	0.186149	Smad4	ENSMUST00000154239.1|Arap1|ENSMUSG00000032812.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 	ENSMUST00000098243.2|Arap1|ENSMUSG00000032812.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm10_v2_chr9_+_13621646_13621646	0.18539	Smad4	ENSMUST00000034401.8|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr5_-_24445166_24445220	0.179849	Smad4	ENSMUST00000115043.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase 	ENSMUST00000115041.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr4_-_129742275_129742312	0.175456	Smad4	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr11_+_60699758_60699845	0.174989	Smad4	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr2_+_155940728_155940728	0.174607	Smad4	ENSMUST00000109629.1|Gm15557|ENSMUSG00000078972.1|predicted gene 15557
mm10_v2_chr10_+_18845071_18845112	0.174266	Smad4	ENSMUST00000019998.7|Perp|ENSMUSG00000019851.7|PERP, TP53 apoptosis effector
mm10_v2_chr11_+_53433299_53433357	0.172527	Smad4	ENSMUST00000018382.6|Gdf9|ENSMUSG00000018238.6|growth differentiation factor 9
mm10_v2_chr1_-_133801031_133801041	0.164645	Smad4	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr18_-_52529692_52529709	0.152562	Smad4	ENSMUST00000025409.7|Lox|ENSMUSG00000024529.7|lysyl oxidase
mm10_v2_chr2_+_32628390_32628415	0.150044	Smad4	ENSMUST00000156578.1|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr4_-_134245579_134245604	0.14686	Smad4	ENSMUST00000030644.7|Zfp593|ENSMUSG00000028840.10|zinc finger protein 593
mm10_v2_chr17_-_35162969_35163040	0.144742	Smad4	ENSMUST00000174805.1|Prrc2a|ENSMUSG00000024393.8|proline-rich coiled-coil 2A
mm10_v2_chrX_+_18162575_18162657	0.143801	Smad4	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr8_-_92356103_92356120	0.14367	Smad4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr14_-_54554359_54554370	0.14048	Smad4	ENSMUST00000022784.8|Haus4|ENSMUSG00000022177.8|HAUS augmin-like complex, subunit 4
mm10_v2_chr11_-_106160101_106160168	0.137895	Smad4	ENSMUST00000045923.3|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chrX_+_101383726_101383741	0.131085	Smad4	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr9_-_20898592_20898631	0.126353	Smad4	ENSMUST00000004206.8|Eif3g|ENSMUSG00000070319.5|eukaryotic translation initiation factor 3, subunit G
mm10_v2_chr6_-_72958097_72958302	0.122349	Smad4	ENSMUST00000114049.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr10_+_90576777_90576815	0.118326	Smad4	ENSMUST00000183136.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182595.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr11_-_116110211_116110259	0.117053	Smad4	ENSMUST00000106441.1|Trim47|ENSMUSG00000020773.5|tripartite motif-containing 47 	ENSMUST00000021120.5|Trim47|ENSMUSG00000020773.5|tripartite motif-containing 47
mm10_v2_chr9_-_49798729_49798855	0.11405	Smad4	ENSMUST00000166811.2|Ncam1|ENSMUSG00000039542.9|neural cell adhesion molecule 1
mm10_v2_chr5_-_24445254_24445287	0.112796	Smad4	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr2_+_55437100_55437182	0.112697	Smad4	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr5_+_120431770_120431905	0.112666	Smad4	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr2_+_96318014_96318216	0.11069	Smad4	ENSMUST00000135431.1|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C 	ENSMUST00000162807.2|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C
mm10_v2_chr13_-_115090123_115090241	0.10562	Smad4	ENSMUST00000109226.3|Pelo|ENSMUSG00000042275.8|pelota homolog (Drosophila)
mm10_v2_chr12_+_13269111_13269154	0.0973076	Smad4	ENSMUST00000042953.8|Nbas|ENSMUSG00000020576.9|neuroblastoma amplified sequence
mm10_v2_chr4_+_126677630_126677646	0.0971069	Smad4	ENSMUST00000030642.2|Psmb2|ENSMUSG00000028837.2|proteasome (prosome, macropain) subunit, beta type 2
mm10_v2_chr9_-_105521147_105521265	0.0873582	Smad4	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr7_-_89517576_89517587	0.0843856	Smad4	ENSMUST00000041761.5|Prss23|ENSMUSG00000039405.6|protease, serine, 23
mm10_v2_chr3_+_36552600_36552677	0.0810471	Smad4	ENSMUST00000029269.5|Exosc9|ENSMUSG00000027714.5|exosome component 9 	ENSMUST00000136890.1|Exosc9|ENSMUSG00000027714.5|exosome component 9
mm10_v2_chrX_-_7898950_7899000	0.0803426	Smad4	ENSMUST00000115655.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1 	ENSMUST00000156741.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr7_+_127485221_127485221	0.0793796	Smad4	ENSMUST00000048896.6|Fbrs|ENSMUSG00000042423.7|fibrosin
mm10_v2_chr3_+_89436736_89436761	0.0790895	Smad4	ENSMUST00000146630.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1 	ENSMUST00000145753.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1
mm10_v2_chr11_+_97663366_97663414	0.0780054	Smad4	ENSMUST00000044730.5|Mllt6|ENSMUSG00000038437.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm10_v2_chr4_+_116221689_116221698	0.0764145	Smad4	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr7_+_117380937_117380992	0.0741128	Smad4	ENSMUST00000032892.5|Xylt1|ENSMUSG00000030657.5|xylosyltransferase 1
mm10_v2_chr8_+_95825353_95825354	0.0725729	Smad4	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr11_-_115419917_115419962	0.0720846	Smad4	ENSMUST00000106537.1|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000043931.2|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000073791.3|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm10_v2_chr4_+_117835387_117835428	0.0687764	Smad4	ENSMUST00000169885.1|Slc6a9|ENSMUSG00000028542.11|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm10_v2_chr11_-_102319093_102319105	0.068502	Smad4	ENSMUST00000174302.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000178839.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000006754.7|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr17_+_72918298_72918316	0.0677726	Smad4	ENSMUST00000024857.6|Lbh|ENSMUSG00000024063.6|limb-bud and heart
mm10_v2_chr10_+_90576872_90576992	0.0658156	Smad4	ENSMUST00000182550.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000099364.5|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr1_-_45503282_45503282	0.0649166	Smad4	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr5_-_124352233_124352302	0.0637837	Smad4	ENSMUST00000111472.1|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr14_-_64949838_64949886	0.0619614	Smad4	ENSMUST00000067843.3|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176489.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175905.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000022544.7|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175744.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176128.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr15_-_93336800_93336852	0.0616249	Smad4	ENSMUST00000080299.6|Yaf2|ENSMUSG00000022634.9|YY1 associated factor 2
mm10_v2_chr10_+_91083036_91083075	0.0550169	Smad4	ENSMUST00000020149.5|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chr8_-_41016749_41016769	0.0505702	Smad4	ENSMUST00000117735.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr2_+_119547697_119547762	0.0502948	Smad4	ENSMUST00000014221.6|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1 	ENSMUST00000119172.1|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1
mm10_v2_chr10_+_90576708_90576766	0.0469028	Smad4	ENSMUST00000182430.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182960.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182045.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182083.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr16_-_45158183_45158286	0.0456658	Smad4	ENSMUST00000114600.1|Slc35a5|ENSMUSG00000022664.5|solute carrier family 35, member A5
mm10_v2_chr5_+_65537267_65537331	0.0406787	Smad4	ENSMUST00000122141.1|Ube2k|ENSMUSG00000029203.10|ubiquitin-conjugating enzyme E2K
mm10_v2_chr11_-_4160286_4160305	0.0374732	Smad4	ENSMUST00000093381.4|Ccdc157|ENSMUSG00000051427.8|coiled-coil domain containing 157 	ENSMUST00000101626.2|Ccdc157|ENSMUSG00000051427.8|coiled-coil domain containing 157
mm10_v2_chr3_-_33143227_33143266	0.0320431	Smad4	ENSMUST00000108219.1|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like
mm10_v2_chr11_-_106160708_106160860	0.0309975	Smad4	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr9_+_21424984_21425244	0.0276388	Smad4	ENSMUST00000172482.1|Dnm2|ENSMUSG00000033335.11|dynamin 2 	ENSMUST00000174050.1|Dnm2|ENSMUSG00000033335.11|dynamin 2
mm10_v2_chr3_-_146839365_146839367	0.0216183	Smad4	ENSMUST00000084614.3|Gm10288|ENSMUSG00000070343.2|predicted gene 10288
mm10_v2_chr15_-_103366763_103366798	0.0141969	Smad4	ENSMUST00000023128.6|Itga5|ENSMUSG00000000555.6|integrin alpha 5 (fibronectin receptor alpha)
mm10_v2_chr11_+_105975204_105975215	0.00637624	Smad4	ENSMUST00000001964.7|Ace|ENSMUSG00000020681.8|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm10_v2_chr11_-_106159902_106159927	0.00391036	Smad4	ENSMUST00000064545.4|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr1_-_143702832_143702893	0.00327128	Smad4	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chrX_+_136270302_136270352	0.00113709	Smad4	ENSMUST00000113112.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
