mm10_v2_chr12_+_29528382_29528468	6.06219	Sox6_Sox9	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr11_-_98329641_98329654	5.99994	Sox6_Sox9	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr8_-_84773381_84773427	3.8072	Sox6_Sox9	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr18_-_43059418_43059471	3.07982	Sox6_Sox9	ENSMUST00000025377.7|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr17_-_79355082_79355103	3.07695	Sox6_Sox9	ENSMUST00000068958.7|Cdc42ep3|ENSMUSG00000036533.8|CDC42 effector protein (Rho GTPase binding) 3
mm10_v2_chr18_+_37484955_37485028	3.0342	Sox6_Sox9	ENSMUST00000053856.4|Pcdhb17|ENSMUSG00000046387.4|protocadherin beta 17
mm10_v2_chr17_+_55445550_55445701	2.89015	Sox6_Sox9	ENSMUST00000025000.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr10_-_29144194_29144194	2.61634	Sox6_Sox9	ENSMUST00000070359.2|Gm9996|ENSMUSG00000056316.2|predicted gene 9996
mm10_v2_chr5_+_3928033_3928178	2.38843	Sox6_Sox9	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr7_+_96210107_96210183	2.3652	Sox6_Sox9	ENSMUST00000138760.1|Tenm4|ENSMUSG00000048078.10|teneurin transmembrane protein 4
mm10_v2_chr5_+_66968416_66968447	2.27041	Sox6_Sox9	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr10_+_69534039_69534070	2.26794	Sox6_Sox9	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_+_67586520_67586546	2.26018	Sox6_Sox9	ENSMUST00000108682.2|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr1_-_56972437_56972502	2.2495	Sox6_Sox9	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr10_+_29143996_29144126	2.22414	Sox6_Sox9	ENSMUST00000092629.2|Soga3|ENSMUSG00000038916.6|SOGA family member 3
mm10_v2_chr5_+_66968559_66968577	2.22232	Sox6_Sox9	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr10_-_83534130_83534141	2.08343	Sox6_Sox9	ENSMUST00000020497.7|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr5_+_3928267_3928300	2.06053	Sox6_Sox9	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr2_+_37516618_37516634	1.94245	Sox6_Sox9	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr5_-_131538687_131538717	1.91539	Sox6_Sox9	ENSMUST00000161374.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr7_-_46179929_46180033	1.90062	Sox6_Sox9	ENSMUST00000033123.6|Abcc8|ENSMUSG00000040136.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 8
mm10_v2_chr11_+_67586675_67586720	1.82871	Sox6_Sox9	ENSMUST00000108680.1|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chrX_+_112600526_112600526	1.80941	Sox6_Sox9	ENSMUST00000113409.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr8_+_123411424_123411562	1.78826	Sox6_Sox9	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr4_+_13743424_13743478	1.7739	Sox6_Sox9	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr3_-_123690806_123690847	1.72828	Sox6_Sox9	ENSMUST00000154668.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr12_+_31265279_31265322	1.70007	Sox6_Sox9	ENSMUST00000002979.8|Lamb1|ENSMUSG00000002900.9|laminin B1 	ENSMUST00000170495.1|Lamb1|ENSMUSG00000002900.9|laminin B1
mm10_v2_chr9_-_29411736_29411773	1.68827	Sox6_Sox9	ENSMUST00000115236.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr9_-_29412204_29412277	1.66905	Sox6_Sox9	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr18_-_23038656_23038676	1.66686	Sox6_Sox9	ENSMUST00000081423.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr9_+_27790947_27790991	1.65683	Sox6_Sox9	ENSMUST00000115243.2|Opcml|ENSMUSG00000062257.6|opioid binding protein/cell adhesion molecule-like
mm10_v2_chr2_-_36104060_36104073	1.64264	Sox6_Sox9	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr16_+_13986596_13986674	1.61821	Sox6_Sox9	ENSMUST00000056521.5|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000118412.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000131608.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene
mm10_v2_chr6_-_13839916_13839942	1.59061	Sox6_Sox9	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr6_-_12749193_12749253	1.58014	Sox6_Sox9	ENSMUST00000046121.6|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A 	ENSMUST00000172356.1|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A
mm10_v2_chrX_-_143933204_143933311	1.57195	Sox6_Sox9	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chrX_-_143933089_143933142	1.56772	Sox6_Sox9	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr6_+_86404336_86404473	1.49167	Sox6_Sox9	ENSMUST00000113713.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000113708.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr5_-_136244865_136244908	1.48244	Sox6_Sox9	ENSMUST00000005188.9|Sh2b2|ENSMUSG00000005057.9|SH2B adaptor protein 2
mm10_v2_chr1_-_64122256_64122321	1.45217	Sox6_Sox9	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr2_-_65567465_65567495	1.42164	Sox6_Sox9	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr2_-_160367057_160367073	1.41039	Sox6_Sox9	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr12_+_31265234_31265267	1.37848	Sox6_Sox9	ENSMUST00000169088.1|Lamb1|ENSMUSG00000002900.9|laminin B1
mm10_v2_chr6_+_86404257_86404319	1.35945	Sox6_Sox9	ENSMUST00000095752.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000130967.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr4_+_43406435_43406615	1.32677	Sox6_Sox9	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr18_+_37477768_37477835	1.3235	Sox6_Sox9	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr12_+_24974914_24974948	1.29758	Sox6_Sox9	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr14_+_66344369_66344380	1.29529	Sox6_Sox9	ENSMUST00000118426.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000121955.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000120229.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000134440.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr6_+_86404219_86404240	1.27458	Sox6_Sox9	ENSMUST00000095754.3|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000095753.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr8_-_84937347_84937367	1.25968	Sox6_Sox9	ENSMUST00000109741.2|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1 	ENSMUST00000119820.1|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1
mm10_v2_chr3_+_101377074_101377158	1.25134	Sox6_Sox9	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr14_+_66344296_66344316	1.2511	Sox6_Sox9	ENSMUST00000152093.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000074523.6|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr2_+_4400958_4400975	1.24188	Sox6_Sox9	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr16_+_23226014_23226077	1.22051	Sox6_Sox9	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr1_-_12991109_12991177	1.16656	Sox6_Sox9	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr10_+_123264076_123264125	1.15986	Sox6_Sox9	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr13_+_88821472_88821520	1.14247	Sox6_Sox9	ENSMUST00000118731.1|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3 	ENSMUST00000081769.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr18_+_37489465_37489465	1.14198	Sox6_Sox9	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr10_-_30655859_30655868	1.1419	Sox6_Sox9	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr16_-_34573526_34573554	1.11445	Sox6_Sox9	ENSMUST00000114961.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr2_-_156312470_156312704	1.11368	Sox6_Sox9	ENSMUST00000079125.6|Scand1|ENSMUSG00000046229.9|SCAN domain-containing 1
mm10_v2_chr16_+_4036942_4037103	1.09785	Sox6_Sox9	ENSMUST00000137748.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000006136.4|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000157044.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000120009.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I
mm10_v2_chr10_-_121311034_121311189	1.09618	Sox6_Sox9	ENSMUST00000064107.5|Tbc1d30|ENSMUSG00000052302.5|TBC1 domain family, member 30
mm10_v2_chr7_+_128688480_128688500	1.092	Sox6_Sox9	ENSMUST00000118605.1|Inpp5f|ENSMUSG00000042105.12|inositol polyphosphate-5-phosphatase F
mm10_v2_chr1_-_93101854_93101879	1.08027	Sox6_Sox9	ENSMUST00000171796.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A 	ENSMUST00000171556.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr12_-_81781121_81781176	1.07458	Sox6_Sox9	ENSMUST00000035987.7|Map3k9|ENSMUSG00000042724.7|mitogen-activated protein kinase kinase kinase 9
mm10_v2_chr15_+_83779975_83779988	1.06947	Sox6_Sox9	ENSMUST00000163723.1|Mpped1|ENSMUSG00000041708.6|metallophosphoesterase domain containing 1
mm10_v2_chr4_+_48585276_48585365	1.06754	Sox6_Sox9	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr8_+_45628176_45628219	1.05612	Sox6_Sox9	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr13_+_88821606_88821642	1.02833	Sox6_Sox9	ENSMUST00000043111.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr19_-_46327121_46327156	1.02184	Sox6_Sox9	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr7_+_99381495_99381555	0.998513	Sox6_Sox9	ENSMUST00000037528.8|Gdpd5|ENSMUSG00000035314.8|glycerophosphodiester phosphodiesterase domain containing 5
mm10_v2_chr1_+_66386968_66386999	0.998048	Sox6_Sox9	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr9_+_58823512_58823512	0.973759	Sox6_Sox9	ENSMUST00000034889.8|Hcn4|ENSMUSG00000032338.8|hyperpolarization-activated, cyclic nucleotide-gated K+ 4
mm10_v2_chr4_-_105109829_105109913	0.972052	Sox6_Sox9	ENSMUST00000030243.7|Prkaa2|ENSMUSG00000028518.8|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm10_v2_chr7_+_80860909_80860972	0.971971	Sox6_Sox9	ENSMUST00000132163.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2 	ENSMUST00000147125.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2
mm10_v2_chr19_-_56822161_56822220	0.965871	Sox6_Sox9	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr16_-_23988852_23988852	0.962706	Sox6_Sox9	ENSMUST00000023151.5|Bcl6|ENSMUSG00000022508.5|B cell leukemia/lymphoma 6
mm10_v2_chr1_-_93101825_93101849	0.930633	Sox6_Sox9	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr2_+_32741452_32741499	0.92663	Sox6_Sox9	ENSMUST00000131101.1|Sh2d3c|ENSMUSG00000059013.6|SH2 domain containing 3C
mm10_v2_chr8_-_105289465_105289541	0.924747	Sox6_Sox9	ENSMUST00000171788.1|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene 	ENSMUST00000014981.6|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene
mm10_v2_chrX_-_104201126_104201185	0.920265	Sox6_Sox9	ENSMUST00000056502.6|C77370|ENSMUSG00000046449.9|expressed sequence C77370 	ENSMUST00000118314.1|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr15_-_79658889_79658956	0.89549	Sox6_Sox9	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr13_+_93304940_93305278	0.893698	Sox6_Sox9	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr9_-_13446753_13446753	0.893158	Sox6_Sox9	ENSMUST00000167906.2|Gm17571|ENSMUSG00000090592.2|predicted gene, 17571
mm10_v2_chr7_+_16310412_16310455	0.883603	Sox6_Sox9	ENSMUST00000136781.1|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr1_-_119837613_119837673	0.8809	Sox6_Sox9	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr6_+_17463749_17463809	0.879456	Sox6_Sox9	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr8_+_45507768_45507818	0.876524	Sox6_Sox9	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr5_+_14514918_14514951	0.866926	Sox6_Sox9	ENSMUST00000030691.10|Pclo|ENSMUSG00000061601.9|piccolo (presynaptic cytomatrix protein) 	ENSMUST00000182407.1|Pclo|ENSMUSG00000061601.9|piccolo (presynaptic cytomatrix protein)
mm10_v2_chr6_+_115675983_115676004	0.866454	Sox6_Sox9	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr4_+_48585135_48585187	0.864389	Sox6_Sox9	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr4_-_14621805_14621819	0.861744	Sox6_Sox9	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr5_-_131616599_131616611	0.861276	Sox6_Sox9	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr2_+_156420837_156420909	0.849985	Sox6_Sox9	ENSMUST00000103137.3|Epb4.1l1|ENSMUSG00000027624.11|erythrocyte protein band 4.1-like 1
mm10_v2_chr12_+_40446050_40446099	0.842868	Sox6_Sox9	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chrX_+_93654863_93654981	0.841231	Sox6_Sox9	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr16_+_17070127_17070215	0.816606	Sox6_Sox9	ENSMUST00000115729.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr6_-_132314757_132314757	0.814425	Sox6_Sox9	ENSMUST00000048686.8|Prpmp5|ENSMUSG00000052262.7|proline-rich protein MP5
mm10_v2_chr3_-_127499095_127499137	0.808285	Sox6_Sox9	ENSMUST00000182594.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr1_-_119836999_119837139	0.802442	Sox6_Sox9	ENSMUST00000163621.1|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4 	ENSMUST00000168303.1|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr4_+_42158092_42158092	0.795422	Sox6_Sox9	ENSMUST00000098122.2|Gm13306|ENSMUSG00000073877.4|predicted gene 13306
mm10_v2_chr13_+_75967704_75967753	0.792058	Sox6_Sox9	ENSMUST00000022081.1|Spata9|ENSMUSG00000021590.6|spermatogenesis associated 9
mm10_v2_chr1_+_34005872_34005908	0.791241	Sox6_Sox9	ENSMUST00000182296.1|Dst|ENSMUSG00000026131.11|dystonin
mm10_v2_chr2_+_158666690_158666740	0.78514	Sox6_Sox9	ENSMUST00000103116.3|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr16_+_78301673_78301760	0.78147	Sox6_Sox9	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr1_-_119837338_119837386	0.775881	Sox6_Sox9	ENSMUST00000163435.1|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr15_-_79658749_79658798	0.768843	Sox6_Sox9	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr10_+_39612934_39612934	0.746772	Sox6_Sox9	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr4_-_82705735_82705754	0.74268	Sox6_Sox9	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr18_+_37473538_37473562	0.735931	Sox6_Sox9	ENSMUST00000050034.1|Pcdhb15|ENSMUSG00000047033.1|protocadherin beta 15
mm10_v2_chr16_+_94370618_94370784	0.722106	Sox6_Sox9	ENSMUST00000117648.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000147352.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150346.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000155692.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000153988.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000141856.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000152117.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150097.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000122895.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000151770.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr16_+_94370786_94370823	0.721147	Sox6_Sox9	ENSMUST00000147046.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000149885.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000127667.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000119131.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000145883.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr8_-_4259257_4259283	0.708508	Sox6_Sox9	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr11_-_78497458_78497539	0.703111	Sox6_Sox9	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr13_-_97747399_97747414	0.701675	Sox6_Sox9	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr5_+_34549595_34549688	0.687961	Sox6_Sox9	ENSMUST00000179943.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr18_+_37742088_37742137	0.686714	Sox6_Sox9	ENSMUST00000003599.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr2_-_65567505_65567627	0.683005	Sox6_Sox9	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr18_+_35965088_35965110	0.679948	Sox6_Sox9	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr5_+_30711564_30711586	0.671043	Sox6_Sox9	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr2_+_146221921_146221921	0.669423	Sox6_Sox9	ENSMUST00000089257.4|Insm1|ENSMUSG00000068154.4|insulinoma-associated 1
mm10_v2_chr11_-_78497734_78497793	0.665665	Sox6_Sox9	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr2_+_156312299_156312426	0.661546	Sox6_Sox9	ENSMUST00000037096.2|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2
mm10_v2_chr12_-_72236692_72236724	0.656701	Sox6_Sox9	ENSMUST00000021497.9|Rtn1|ENSMUSG00000021087.11|reticulon 1 	ENSMUST00000137990.1|Rtn1|ENSMUSG00000021087.11|reticulon 1
mm10_v2_chr5_+_138171997_138172021	0.656666	Sox6_Sox9	ENSMUST00000019662.4|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1 	ENSMUST00000151318.1|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1
mm10_v2_chr4_+_137993016_137993036	0.639045	Sox6_Sox9	ENSMUST00000105830.2|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000084215.5|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000058133.3|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000139759.1|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3
mm10_v2_chr15_-_102722120_102722137	0.632343	Sox6_Sox9	ENSMUST00000171838.1|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr11_-_3863895_3863910	0.630022	Sox6_Sox9	ENSMUST00000070552.7|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr13_+_83732438_83732566	0.629761	Sox6_Sox9	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr5_+_30711849_30711905	0.627293	Sox6_Sox9	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr2_+_153031852_153032014	0.620381	Sox6_Sox9	ENSMUST00000037235.6|Xkr7|ENSMUSG00000042631.7|X Kell blood group precursor related family member 7 homolog
mm10_v2_chr7_+_24507006_24507024	0.617193	Sox6_Sox9	ENSMUST00000176880.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr11_+_29692937_29692997	0.615285	Sox6_Sox9	ENSMUST00000102843.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000102842.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000078830.4|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000170731.1|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr15_-_102722150_102722178	0.615177	Sox6_Sox9	ENSMUST00000023818.3|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr11_+_97415527_97415538	0.613105	Sox6_Sox9	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr4_-_148130678_148130706	0.606175	Sox6_Sox9	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr1_-_33814516_33814576	0.604109	Sox6_Sox9	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr15_-_95528228_95528266	0.593906	Sox6_Sox9	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr13_-_22035589_22035643	0.592805	Sox6_Sox9	ENSMUST00000091742.4|Hist1h2ah|ENSMUSG00000069302.4|histone cluster 1, H2ah
mm10_v2_chr2_-_6884940_6884957	0.586915	Sox6_Sox9	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_+_34549568_34549581	0.579334	Sox6_Sox9	ENSMUST00000118545.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr5_+_109923400_109923400	0.579262	Sox6_Sox9	ENSMUST00000112544.1|Gm15446|ENSMUSG00000090015.2|predicted gene 15446
mm10_v2_chr7_+_16309577_16309641	0.578784	Sox6_Sox9	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr1_+_160906372_160906460	0.576836	Sox6_Sox9	ENSMUST00000161609.1|Rc3h1|ENSMUSG00000040423.4|RING CCCH (C3H) domains 1
mm10_v2_chr11_-_68957445_68957485	0.57481	Sox6_Sox9	ENSMUST00000108671.1|Arhgef15|ENSMUSG00000052921.7|Rho guanine nucleotide exchange factor (GEF) 15
mm10_v2_chrX_+_100767719_100767749	0.572711	Sox6_Sox9	ENSMUST00000000901.6|Dlg3|ENSMUSG00000000881.6|discs, large homolog 3 (Drosophila) 	ENSMUST00000113736.2|Dlg3|ENSMUSG00000000881.6|discs, large homolog 3 (Drosophila) 	ENSMUST00000087984.4|Dlg3|ENSMUSG00000000881.6|discs, large homolog 3 (Drosophila)
mm10_v2_chr4_-_91399984_91400007	0.571404	Sox6_Sox9	ENSMUST00000102799.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr2_+_68104671_68104671	0.566651	Sox6_Sox9	ENSMUST00000042456.3|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr2_+_68117713_68117713	0.563194	Sox6_Sox9	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr5_-_65537139_65537184	0.558257	Sox6_Sox9	ENSMUST00000149167.1|Smim14|ENSMUSG00000037822.6|small integral membrane protein 14
mm10_v2_chr15_-_91049823_91049948	0.550211	Sox6_Sox9	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr1_+_176814660_176814660	0.549929	Sox6_Sox9	ENSMUST00000056773.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8 	ENSMUST00000027785.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8
mm10_v2_chr2_+_31245801_31245900	0.546892	Sox6_Sox9	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr4_-_116405986_116406120	0.544516	Sox6_Sox9	ENSMUST00000123072.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000144281.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chr4_+_42655251_42655251	0.543022	Sox6_Sox9	ENSMUST00000177785.1|Ccl27b|ENSMUSG00000096826.1|chemokine (C-C motif) ligand 27b
mm10_v2_chr17_-_90088343_90088373	0.540855	Sox6_Sox9	ENSMUST00000173917.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr16_+_17070220_17070239	0.539544	Sox6_Sox9	ENSMUST00000141959.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr15_-_77153772_77153817	0.539204	Sox6_Sox9	ENSMUST00000166610.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000111581.2|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr1_-_22805994_22806007	0.539169	Sox6_Sox9	ENSMUST00000097808.4|Rims1|ENSMUSG00000041670.9|regulating synaptic membrane exocytosis 1
mm10_v2_chr13_+_93304799_93304935	0.533975	Sox6_Sox9	ENSMUST00000080127.5|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr10_-_116473418_116473514	0.52681	Sox6_Sox9	ENSMUST00000087965.4|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4 	ENSMUST00000164271.1|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm10_v2_chr10_+_67096456_67096534	0.525979	Sox6_Sox9	ENSMUST00000174317.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr18_+_37307445_37307462	0.525845	Sox6_Sox9	ENSMUST00000056712.2|Pcdhb4|ENSMUSG00000045689.2|protocadherin beta 4
mm10_v2_chr5_+_109996506_109996542	0.518899	Sox6_Sox9	ENSMUST00000112540.1|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932 	ENSMUST00000099484.2|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932 	ENSMUST00000125213.1|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932 	ENSMUST00000143639.1|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932
mm10_v2_chr6_-_122340499_122340510	0.513058	Sox6_Sox9	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr11_-_76468396_76468473	0.509668	Sox6_Sox9	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr16_+_20517000_20517072	0.506499	Sox6_Sox9	ENSMUST00000171572.1|Dvl3|ENSMUSG00000003233.5|dishevelled 3, dsh homolog (Drosophila)
mm10_v2_chr5_-_8622855_8622952	0.505965	Sox6_Sox9	ENSMUST00000047485.8|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B 	ENSMUST00000115378.1|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B
mm10_v2_chr2_+_4559742_4559756	0.505941	Sox6_Sox9	ENSMUST00000176828.1|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr6_-_42710036_42710120	0.504137	Sox6_Sox9	ENSMUST00000045054.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr6_+_143167210_143167267	0.501623	Sox6_Sox9	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr15_-_76521902_76522129	0.501489	Sox6_Sox9	ENSMUST00000164703.1|Scrt1|ENSMUSG00000048385.8|scratch homolog 1, zinc finger protein (Drosophila) 	ENSMUST00000096365.3|Scrt1|ENSMUSG00000048385.8|scratch homolog 1, zinc finger protein (Drosophila)
mm10_v2_chr12_+_52699297_52699411	0.497567	Sox6_Sox9	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr2_+_180598219_180598226	0.496915	Sox6_Sox9	ENSMUST00000103059.1|Col9a3|ENSMUSG00000027570.9|collagen, type IX, alpha 3
mm10_v2_chr16_+_17146937_17146985	0.496176	Sox6_Sox9	ENSMUST00000115706.1|Ydjc|ENSMUSG00000041774.8|YdjC homolog (bacterial) 	ENSMUST00000069064.4|Ydjc|ENSMUSG00000041774.8|YdjC homolog (bacterial)
mm10_v2_chr11_+_3330781_3330812	0.49267	Sox6_Sox9	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr2_-_6884975_6884996	0.490854	Sox6_Sox9	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr11_-_102296618_102296681	0.484709	Sox6_Sox9	ENSMUST00000107132.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3 	ENSMUST00000073234.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3
mm10_v2_chr18_+_37333853_37333946	0.479765	Sox6_Sox9	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr5_+_3343893_3343945	0.472829	Sox6_Sox9	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr11_+_121237216_121237289	0.472059	Sox6_Sox9	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr1_+_75546449_75546514	0.470343	Sox6_Sox9	ENSMUST00000150142.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr14_-_26638183_26638183	0.469376	Sox6_Sox9	ENSMUST00000166902.1|4930570N19Rik|ENSMUSG00000090861.1|RIKEN cDNA 4930570N19 gene
mm10_v2_chr19_+_53600377_53600435	0.463835	Sox6_Sox9	ENSMUST00000025930.9|Smc3|ENSMUSG00000024974.10|structural maintenance of chromosomes 3
mm10_v2_chr11_-_106579111_106579141	0.457559	Sox6_Sox9	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr6_-_122340525_122340561	0.447524	Sox6_Sox9	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr5_-_8367982_8368107	0.443328	Sox6_Sox9	ENSMUST00000088761.4|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115386.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000050166.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000046838.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115388.2|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000088744.5|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115385.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22
mm10_v2_chr15_-_10713537_10713544	0.442672	Sox6_Sox9	ENSMUST00000090339.3|Rai14|ENSMUSG00000022246.7|retinoic acid induced 14
mm10_v2_chr11_-_102447647_102447682	0.442318	Sox6_Sox9	ENSMUST00000049057.4|Fam171a2|ENSMUSG00000034685.4|family with sequence similarity 171, member A2
mm10_v2_chr7_+_141949982_141950086	0.436947	Sox6_Sox9	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr7_+_24507099_24507110	0.434416	Sox6_Sox9	ENSMUST00000177228.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr8_-_69184177_69184240	0.423217	Sox6_Sox9	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr2_-_157079212_157079276	0.423171	Sox6_Sox9	ENSMUST00000069098.6|Soga1|ENSMUSG00000055485.6|suppressor of glucose, autophagy associated 1
mm10_v2_chr7_-_45814302_45814321	0.422961	Sox6_Sox9	ENSMUST00000107729.1|Cyth2|ENSMUSG00000003269.8|cytohesin 2 	ENSMUST00000056820.6|Cyth2|ENSMUSG00000003269.8|cytohesin 2
mm10_v2_chr7_-_45814277_45814300	0.421338	Sox6_Sox9	ENSMUST00000107728.1|Cyth2|ENSMUSG00000003269.8|cytohesin 2
mm10_v2_chr9_+_110532501_110532600	0.421165	Sox6_Sox9	ENSMUST00000153838.2|Setd2|ENSMUSG00000044791.10|SET domain containing 2
mm10_v2_chr17_+_31386244_31386280	0.420627	Sox6_Sox9	ENSMUST00000134525.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A 	ENSMUST00000127929.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr13_+_65278810_65278838	0.4175	Sox6_Sox9	ENSMUST00000126879.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369 	ENSMUST00000130799.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr13_+_14063776_14063822	0.416959	Sox6_Sox9	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr5_+_3344194_3344312	0.412377	Sox6_Sox9	ENSMUST00000042410.4|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr18_+_65698253_65698277	0.40925	Sox6_Sox9	ENSMUST00000115097.1|Oacyl|ENSMUSG00000046610.8|O-acyltransferase like 	ENSMUST00000117694.1|Oacyl|ENSMUSG00000046610.8|O-acyltransferase like
mm10_v2_chr14_-_47568427_47568436	0.404508	Sox6_Sox9	ENSMUST00000042988.6|Atg14|ENSMUSG00000037526.6|autophagy related 14
mm10_v2_chr5_-_142550965_142551110	0.398103	Sox6_Sox9	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr7_-_121035096_121035096	0.394132	Sox6_Sox9	ENSMUST00000065740.2|Gm9905|ENSMUSG00000053358.2|predicted gene 9905
mm10_v2_chr4_-_44167988_44168008	0.386739	Sox6_Sox9	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr7_-_81934316_81934473	0.386053	Sox6_Sox9	ENSMUST00000026094.5|Hdgfrp3|ENSMUSG00000025104.7|hepatoma-derived growth factor, related protein 3 	ENSMUST00000107305.1|Hdgfrp3|ENSMUSG00000025104.7|hepatoma-derived growth factor, related protein 3
mm10_v2_chr9_+_74976096_74976177	0.380645	Sox6_Sox9	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr2_-_165898951_165899016	0.372054	Sox6_Sox9	ENSMUST00000136842.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr4_+_48585193_48585215	0.369102	Sox6_Sox9	ENSMUST00000107703.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr5_-_138155694_138155744	0.367069	Sox6_Sox9	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr2_-_104816696_104816792	0.363818	Sox6_Sox9	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr9_-_7835255_7835255	0.362197	Sox6_Sox9	ENSMUST00000074246.6|Birc2|ENSMUSG00000057367.6|baculoviral IAP repeat-containing 2
mm10_v2_chr6_+_17463927_17464071	0.356182	Sox6_Sox9	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr2_+_3713478_3713500	0.353752	Sox6_Sox9	ENSMUST00000115053.2|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr15_-_85503227_85503227	0.352813	Sox6_Sox9	ENSMUST00000178942.1|7530416G11Rik|ENSMUSG00000096607.1|RIKEN cDNA 7530416G11 gene
mm10_v2_chr4_+_83417715_83417758	0.347156	Sox6_Sox9	ENSMUST00000030206.3|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3 	ENSMUST00000071544.4|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3
mm10_v2_chr7_-_13009795_13009856	0.345165	Sox6_Sox9	ENSMUST00000051390.7|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45 	ENSMUST00000172240.1|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45
mm10_v2_chr11_-_62392605_62392659	0.344768	Sox6_Sox9	ENSMUST00000151498.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1 	ENSMUST00000159069.1|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr6_+_17065129_17065233	0.341896	Sox6_Sox9	ENSMUST00000115467.4|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000154266.2|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000076654.7|Tes|ENSMUSG00000029552.13|testis derived transcript
mm10_v2_chr9_+_54863742_54863801	0.339567	Sox6_Sox9	ENSMUST00000034843.7|Ireb2|ENSMUSG00000032293.7|iron responsive element binding protein 2
mm10_v2_chr6_-_124741374_124741402	0.337638	Sox6_Sox9	ENSMUST00000004389.5|Grcc10|ENSMUSG00000072772.3|gene rich cluster, C10 gene
mm10_v2_chr2_-_33942111_33942151	0.334977	Sox6_Sox9	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr15_-_79254737_79254764	0.324013	Sox6_Sox9	ENSMUST00000039752.3|Slc16a8|ENSMUSG00000032988.3|solute carrier family 16 (monocarboxylic acid transporters), member 8
mm10_v2_chr1_+_133045984_133046082	0.311428	Sox6_Sox9	ENSMUST00000077730.5|Pik3c2b|ENSMUSG00000026447.10|phosphoinositide-3-kinase, class 2, beta polypeptide
mm10_v2_chr1_-_97761538_97761609	0.310428	Sox6_Sox9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr6_-_122340200_122340244	0.304526	Sox6_Sox9	ENSMUST00000159384.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr11_+_87760533_87760587	0.299044	Sox6_Sox9	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr9_-_107770945_107771007	0.292812	Sox6_Sox9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chrX_-_104413825_104413856	0.289596	Sox6_Sox9	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr5_-_109691041_109691041	0.286734	Sox6_Sox9	ENSMUST00000092720.3|5430403G16Rik|ENSMUSG00000072763.2|RIKEN cDNA 5430403G16 gene
mm10_v2_chr16_+_20516962_20516999	0.286422	Sox6_Sox9	ENSMUST00000003318.5|Dvl3|ENSMUSG00000003233.5|dishevelled 3, dsh homolog (Drosophila)
mm10_v2_chr11_-_49187159_49187195	0.284619	Sox6_Sox9	ENSMUST00000046522.6|Btnl9|ENSMUSG00000040283.8|butyrophilin-like 9
mm10_v2_chr9_-_75597643_75597656	0.283949	Sox6_Sox9	ENSMUST00000164100.1|Tmod2|ENSMUSG00000032186.8|tropomodulin 2
mm10_v2_chr12_+_51348265_51348368	0.282438	Sox6_Sox9	ENSMUST00000119211.1|G2e3|ENSMUSG00000035293.7|G2/M-phase specific E3 ubiquitin ligase
mm10_v2_chr14_-_68655804_68655842	0.282288	Sox6_Sox9	ENSMUST00000111072.1|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28 	ENSMUST00000022642.5|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28
mm10_v2_chr4_-_155863362_155863362	0.279458	Sox6_Sox9	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr10_-_62792243_62792368	0.279268	Sox6_Sox9	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr10_-_17947997_17948098	0.278809	Sox6_Sox9	ENSMUST00000037879.6|Heca|ENSMUSG00000039879.8|headcase homolog (Drosophila)
mm10_v2_chr8_+_106415319_106415396	0.278741	Sox6_Sox9	ENSMUST00000034382.7|Zfp90|ENSMUSG00000031907.8|zinc finger protein 90
mm10_v2_chr2_+_26315513_26315602	0.269782	Sox6_Sox9	ENSMUST00000066936.2|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans) 	ENSMUST00000078616.5|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr2_+_112284561_112284610	0.265618	Sox6_Sox9	ENSMUST00000053666.7|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr7_-_103813913_103813996	0.265048	Sox6_Sox9	ENSMUST00000098192.3|Hbb-bt|ENSMUSG00000073940.3|hemoglobin, beta adult t chain
mm10_v2_chr12_+_51348370_51348406	0.264148	Sox6_Sox9	ENSMUST00000121521.1|G2e3|ENSMUSG00000035293.7|G2/M-phase specific E3 ubiquitin ligase
mm10_v2_chr9_-_60511003_60511035	0.25839	Sox6_Sox9	ENSMUST00000098660.3|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr13_+_80886095_80886201	0.257433	Sox6_Sox9	ENSMUST00000161441.1|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chrX_+_166238901_166238914	0.25475	Sox6_Sox9	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr2_-_20968526_20968625	0.254384	Sox6_Sox9	ENSMUST00000141298.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21 	ENSMUST00000125783.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr1_-_168431502_168431513	0.250376	Sox6_Sox9	ENSMUST00000064438.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr4_+_86874396_86874438	0.249463	Sox6_Sox9	ENSMUST00000045224.7|Acer2|ENSMUSG00000038007.8|alkaline ceramidase 2 	ENSMUST00000084433.4|Acer2|ENSMUSG00000038007.8|alkaline ceramidase 2
mm10_v2_chr2_-_146511899_146511979	0.246652	Sox6_Sox9	ENSMUST00000131824.1|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr2_-_30474199_30474222	0.243487	Sox6_Sox9	ENSMUST00000065134.2|Ier5l|ENSMUSG00000089762.2|immediate early response 5-like
mm10_v2_chr4_-_44168252_44168289	0.242453	Sox6_Sox9	ENSMUST00000145760.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38 	ENSMUST00000128426.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chrX_-_167209149_167209164	0.242111	Sox6_Sox9	ENSMUST00000112176.1|Tmsb4x|ENSMUSG00000049775.10|thymosin, beta 4, X chromosome
mm10_v2_chr14_-_63177793_63177889	0.24178	Sox6_Sox9	ENSMUST00000054963.9|Fdft1|ENSMUSG00000021273.9|farnesyl diphosphate farnesyl transferase 1
mm10_v2_chr13_+_65278839_65278903	0.239927	Sox6_Sox9	ENSMUST00000155732.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr18_+_37447641_37447674	0.238205	Sox6_Sox9	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr7_+_27195781_27195885	0.235782	Sox6_Sox9	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr11_+_116843278_116843278	0.235745	Sox6_Sox9	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr13_-_54687644_54687688	0.235377	Sox6_Sox9	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr6_+_57702601_57702658	0.226701	Sox6_Sox9	ENSMUST00000072954.1|Lancl2|ENSMUSG00000062190.6|LanC (bacterial lantibiotic synthetase component C)-like 2 	ENSMUST00000050077.8|Lancl2|ENSMUSG00000062190.6|LanC (bacterial lantibiotic synthetase component C)-like 2
mm10_v2_chr2_-_161109017_161109027	0.224205	Sox6_Sox9	ENSMUST00000039782.7|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6 	ENSMUST00000134178.1|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6
mm10_v2_chr16_+_17070281_17070320	0.220239	Sox6_Sox9	ENSMUST00000090199.3|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr11_-_77489666_77489687	0.219309	Sox6_Sox9	ENSMUST00000037593.7|Ankrd13b|ENSMUSG00000037907.10|ankyrin repeat domain 13b 	ENSMUST00000092892.3|Ankrd13b|ENSMUSG00000037907.10|ankyrin repeat domain 13b
mm10_v2_chr17_-_27622785_27622964	0.216795	Sox6_Sox9	ENSMUST00000176458.1|Nudt3|ENSMUSG00000024213.7|nudix (nucleotide diphosphate linked moiety X)-type motif 3 	ENSMUST00000114886.1|Nudt3|ENSMUSG00000024213.7|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm10_v2_chr16_+_17276662_17276680	0.216449	Sox6_Sox9	ENSMUST00000069420.4|Tmem191c|ENSMUSG00000055692.12|transmembrane protein 191C
mm10_v2_chr12_+_19606929_19606929	0.211246	Sox6_Sox9	ENSMUST00000105167.1|Gm9257|ENSMUSG00000095254.1|predicted gene 9257
mm10_v2_chr6_+_11925869_11925941	0.205364	Sox6_Sox9	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr7_+_119900099_119900108	0.202982	Sox6_Sox9	ENSMUST00000106516.1|Lyrm1|ENSMUSG00000030922.5|LYR motif containing 1
mm10_v2_chr18_+_37725706_37725754	0.20092	Sox6_Sox9	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr2_-_37703845_37703885	0.198823	Sox6_Sox9	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chrX_+_109095359_109095391	0.198039	Sox6_Sox9	ENSMUST00000033598.8|Sh3bgrl|ENSMUSG00000031246.8|SH3-binding domain glutamic acid-rich protein like
mm10_v2_chr7_-_83884289_83884341	0.196516	Sox6_Sox9	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr14_+_62837679_62837726	0.195312	Sox6_Sox9	ENSMUST00000014691.8|Wdfy2|ENSMUSG00000014547.9|WD repeat and FYVE domain containing 2
mm10_v2_chr4_-_44168339_44168371	0.192667	Sox6_Sox9	ENSMUST00000045793.8|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr14_+_47663756_47663756	0.189419	Sox6_Sox9	ENSMUST00000022391.7|Ktn1|ENSMUSG00000021843.10|kinectin 1
mm10_v2_chr9_-_88522876_88522929	0.182644	Sox6_Sox9	ENSMUST00000180563.2|Snhg5|ENSMUSG00000097195.2|small nucleolar RNA host gene 5 	ENSMUST00000183030.1|Snhg5|ENSMUSG00000097195.2|small nucleolar RNA host gene 5 	ENSMUST00000182232.1|Snhg5|ENSMUSG00000097195.2|small nucleolar RNA host gene 5
mm10_v2_chr8_+_120488416_120488490	0.176854	Sox6_Sox9	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr2_-_103797617_103797662	0.171647	Sox6_Sox9	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr12_-_31950535_31950560	0.164783	Sox6_Sox9	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chrX_-_103981242_103981287	0.164287	Sox6_Sox9	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr11_+_51261719_51261731	0.163665	Sox6_Sox9	ENSMUST00000130641.1|Clk4|ENSMUSG00000020385.10|CDC like kinase 4
mm10_v2_chr19_+_3767953_3768033	0.16188	Sox6_Sox9	ENSMUST00000113970.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr4_+_43493345_43493430	0.16115	Sox6_Sox9	ENSMUST00000030181.5|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107 	ENSMUST00000107922.2|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107
mm10_v2_chr4_-_34882919_34882964	0.160003	Sox6_Sox9	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr3_-_116808166_116808198	0.15988	Sox6_Sox9	ENSMUST00000040603.7|Agl|ENSMUSG00000033400.8|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm10_v2_chr4_+_122996035_122996099	0.158869	Sox6_Sox9	ENSMUST00000030407.7|Mycl|ENSMUSG00000028654.7|v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)
mm10_v2_chr13_-_92030897_92030908	0.158836	Sox6_Sox9	ENSMUST00000149630.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr10_-_117376922_117376954	0.155757	Sox6_Sox9	ENSMUST00000177145.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176670.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr6_-_29212240_29212297	0.15114	Sox6_Sox9	ENSMUST00000160878.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000078155.5|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr11_-_30268169_30268191	0.151043	Sox6_Sox9	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr12_+_108605757_108605814	0.150962	Sox6_Sox9	ENSMUST00000109854.2|Evl|ENSMUSG00000021262.8|Ena-vasodilator stimulated phosphoprotein
mm10_v2_chr12_-_76177251_76177265	0.146859	Sox6_Sox9	ENSMUST00000101291.3|Esr2|ENSMUSG00000021055.7|estrogen receptor 2 (beta) 	ENSMUST00000076634.4|Esr2|ENSMUSG00000021055.7|estrogen receptor 2 (beta)
mm10_v2_chr19_+_46623387_46623451	0.146077	Sox6_Sox9	ENSMUST00000111855.4|Wbp1l|ENSMUSG00000047731.11|WW domain binding protein 1 like
mm10_v2_chr16_-_76373014_76373103	0.140418	Sox6_Sox9	ENSMUST00000054178.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr4_-_70534904_70534987	0.134842	Sox6_Sox9	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr17_-_34121944_34121988	0.131534	Sox6_Sox9	ENSMUST00000151986.1|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr12_+_19954505_19954505	0.127743	Sox6_Sox9	ENSMUST00000179133.1|Gm21863|ENSMUSG00000095470.1|predicted gene, 21863
mm10_v2_chrX_+_136822671_136822780	0.126536	Sox6_Sox9	ENSMUST00000033800.6|Plp1|ENSMUSG00000031425.9|proteolipid protein (myelin) 1
mm10_v2_chr12_+_111039334_111039400	0.123239	Sox6_Sox9	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr7_+_97081711_97081778	0.119106	Sox6_Sox9	ENSMUST00000004622.5|Gab2|ENSMUSG00000004508.5|growth factor receptor bound protein 2-associated protein 2
mm10_v2_chr4_-_99120898_99120935	0.110861	Sox6_Sox9	ENSMUST00000075836.5|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr6_+_17463826_17463829	0.108251	Sox6_Sox9	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr10_-_116473875_116473929	0.107932	Sox6_Sox9	ENSMUST00000068233.4|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm10_v2_chr7_+_24507122_24507139	0.106501	Sox6_Sox9	ENSMUST00000177205.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr5_-_120777628_120777664	0.106308	Sox6_Sox9	ENSMUST00000044833.8|Oas3|ENSMUSG00000032661.8|2'-5' oligoadenylate synthetase 3
mm10_v2_chr8_+_25518783_25518801	0.106203	Sox6_Sox9	ENSMUST00000084027.5|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000117179.2|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chr2_+_32151074_32151262	0.103955	Sox6_Sox9	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr4_+_122995944_122995958	0.103212	Sox6_Sox9	ENSMUST00000106252.2|Mycl|ENSMUSG00000028654.7|v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)
mm10_v2_chr12_+_29938036_29938059	0.10151	Sox6_Sox9	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr4_+_137993445_137993474	0.09572	Sox6_Sox9	ENSMUST00000105831.2|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000084214.5|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3
mm10_v2_chr12_+_84996309_84996419	0.0953547	Sox6_Sox9	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr11_+_94044111_94044121	0.0950248	Sox6_Sox9	ENSMUST00000132079.1|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr10_+_42860348_42860377	0.0937683	Sox6_Sox9	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr4_-_14621669_14621786	0.0928851	Sox6_Sox9	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr3_-_96058446_96058466	0.0909104	Sox6_Sox9	ENSMUST00000015891.5|Vps45|ENSMUSG00000015747.5|vacuolar protein sorting 45 (yeast)
mm10_v2_chr17_-_48409729_48409906	0.0891045	Sox6_Sox9	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr8_+_25518757_25518772	0.0882253	Sox6_Sox9	ENSMUST00000178276.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000179592.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chrX_+_57053549_57053615	0.0879796	Sox6_Sox9	ENSMUST00000114751.2|Htatsf1|ENSMUSG00000067873.5|HIV TAT specific factor 1 	ENSMUST00000088652.5|Htatsf1|ENSMUSG00000067873.5|HIV TAT specific factor 1
mm10_v2_chr13_+_21945084_21945140	0.0848475	Sox6_Sox9	ENSMUST00000176511.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000102978.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000152258.2|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like)
mm10_v2_chr5_-_23616528_23616597	0.0797119	Sox6_Sox9	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr1_+_158362330_158362411	0.0791259	Sox6_Sox9	ENSMUST00000170718.1|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr11_-_100613334_100613368	0.0791179	Sox6_Sox9	ENSMUST00000146840.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr7_-_28372233_28372371	0.0761551	Sox6_Sox9	ENSMUST00000094644.4|Plekhg2|ENSMUSG00000037552.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm10_v2_chr14_+_59201418_59201503	0.0751091	Sox6_Sox9	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr4_+_127021311_127021339	0.0730014	Sox6_Sox9	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr8_+_3493135_3493212	0.0726277	Sox6_Sox9	ENSMUST00000061508.7|Zfp358|ENSMUSG00000047264.7|zinc finger protein 358
mm10_v2_chr7_-_132813095_132813162	0.0707012	Sox6_Sox9	ENSMUST00000106165.1|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr19_+_47579602_47579681	0.0703933	Sox6_Sox9	ENSMUST00000026043.5|Slk|ENSMUSG00000025060.8|STE20-like kinase
mm10_v2_chr1_+_158362261_158362304	0.0675794	Sox6_Sox9	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr1_-_150465563_150465604	0.0672557	Sox6_Sox9	ENSMUST00000164600.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000111902.2|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000111901.2|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000006171.9|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm10_v2_chr4_+_130663321_130663412	0.0655617	Sox6_Sox9	ENSMUST00000030315.6|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105992.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105991.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000143277.1|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097864.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097862.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila)
mm10_v2_chr7_-_30552255_30552316	0.0638352	Sox6_Sox9	ENSMUST00000108165.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749 	ENSMUST00000153594.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749
mm10_v2_chr7_-_19861299_19861299	0.0628626	Sox6_Sox9	ENSMUST00000014830.7|Ceacam16|ENSMUSG00000014686.7|carcinoembryonic antigen-related cell adhesion molecule 16
mm10_v2_chr4_+_102254739_102254761	0.0607441	Sox6_Sox9	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr9_+_101074727_101074727	0.0584811	Sox6_Sox9	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chr8_-_89147247_89147251	0.0558555	Sox6_Sox9	ENSMUST00000177870.1|Gm6625|ENSMUSG00000094790.1|predicted gene 6625
mm10_v2_chrX_+_48623737_48623790	0.0555375	Sox6_Sox9	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chr9_+_69989466_69989539	0.0544457	Sox6_Sox9	ENSMUST00000034754.5|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000085393.6|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000117450.1|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2
mm10_v2_chr7_-_126676357_126676383	0.0536173	Sox6_Sox9	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr16_-_4213404_4213404	0.0526705	Sox6_Sox9	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chr12_+_84996487_84996496	0.0496307	Sox6_Sox9	ENSMUST00000101202.3|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr12_-_83597140_83597177	0.0494435	Sox6_Sox9	ENSMUST00000048319.4|Zfyve1|ENSMUSG00000042628.7|zinc finger, FYVE domain containing 1
mm10_v2_chr15_-_95528702_95528777	0.040929	Sox6_Sox9	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr7_-_27195727_27195768	0.0402601	Sox6_Sox9	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr19_-_5729618_5729700	0.0368242	Sox6_Sox9	ENSMUST00000116558.2|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000099955.3|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000161368.1|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B
mm10_v2_chr3_-_116807733_116807755	0.0360194	Sox6_Sox9	ENSMUST00000159670.1|Agl|ENSMUSG00000033400.8|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm10_v2_chr13_+_93304066_93304138	0.0356837	Sox6_Sox9	ENSMUST00000109493.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr13_-_104816908_104816953	0.0353149	Sox6_Sox9	ENSMUST00000022228.6|Cwc27|ENSMUSG00000021715.6|CWC27 spliceosome-associated protein homolog (S. cerevisiae)
mm10_v2_chr5_-_109751597_109751719	0.034852	Sox6_Sox9	ENSMUST00000112547.1|4930522L14Rik|ENSMUSG00000072762.3|RIKEN cDNA 4930522L14 gene
mm10_v2_chr1_-_168431695_168431750	0.0344741	Sox6_Sox9	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr13_-_17944151_17944239	0.0339966	Sox6_Sox9	ENSMUST00000009003.7|Rala|ENSMUSG00000008859.7|v-ral simian leukemia viral oncogene homolog A (ras related)
mm10_v2_chr17_+_37193889_37193897	0.0339939	Sox6_Sox9	ENSMUST00000038844.6|Ubd|ENSMUSG00000035186.6|ubiquitin D
mm10_v2_chr7_-_127725616_127725616	0.0339389	Sox6_Sox9	ENSMUST00000076091.2|Ctf2|ENSMUSG00000060034.4|cardiotrophin 2
mm10_v2_chr2_+_181763315_181763335	0.029546	Sox6_Sox9	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_-_105343929_105343929	0.0283307	Sox6_Sox9	ENSMUST00000183149.1|Gbp11|ENSMUSG00000098049.1|guanylate binding protein 11
mm10_v2_chr15_+_100038635_100038669	0.0281348	Sox6_Sox9	ENSMUST00000100203.3|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr8_-_71395794_71395821	0.0278038	Sox6_Sox9	ENSMUST00000049184.7|Ushbp1|ENSMUSG00000034911.7|Usher syndrome 1C binding protein 1
mm10_v2_chr11_+_64979025_64979110	0.0267973	Sox6_Sox9	ENSMUST00000071891.5|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000108697.1|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000101049.2|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli)
mm10_v2_chr5_+_65537209_65537233	0.021523	Sox6_Sox9	ENSMUST00000142407.1|Ube2k|ENSMUSG00000029203.10|ubiquitin-conjugating enzyme E2K
mm10_v2_chr10_-_117376955_117376978	0.0207551	Sox6_Sox9	ENSMUST00000069168.6|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176686.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr5_-_92083667_92083735	0.0198734	Sox6_Sox9	ENSMUST00000113127.3|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2
mm10_v2_chr7_+_127800604_127800696	0.0178629	Sox6_Sox9	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chrX_+_20425688_20425762	0.0169242	Sox6_Sox9	ENSMUST00000115384.2|Phf16|ENSMUSG00000037315.8|PHD finger protein 16
mm10_v2_chr3_-_66296807_66296837	0.0165404	Sox6_Sox9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr1_-_160212864_160212892	0.0155181	Sox6_Sox9	ENSMUST00000014370.5|Cacybp|ENSMUSG00000014226.5|calcyclin binding protein
mm10_v2_chr12_-_34528844_34528904	0.0138803	Sox6_Sox9	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr9_-_72111172_72111225	0.0133432	Sox6_Sox9	ENSMUST00000183992.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr1_+_159232299_159232326	0.0105466	Sox6_Sox9	ENSMUST00000076894.5|Rfwd2|ENSMUSG00000040782.7|ring finger and WD repeat domain 2
mm10_v2_chr7_+_25681158_25681158	0.00908528	Sox6_Sox9	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr5_-_92083455_92083557	0.00642838	Sox6_Sox9	ENSMUST00000169094.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2 	ENSMUST00000167918.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2
mm10_v2_chr12_-_100159601_100159672	0.0045787	Sox6_Sox9	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr3_+_90476121_90476220	0.00456444	Sox6_Sox9	ENSMUST00000001042.8|Ilf2|ENSMUSG00000001016.8|interleukin enhancer binding factor 2
mm10_v2_chr12_+_8674129_8674150	0.00304814	Sox6_Sox9	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr18_-_46212595_46212634	0.000950217	Sox6_Sox9	ENSMUST00000037011.4|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
