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PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish

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Results for cux1a

Z-value: 0.33

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Transcription factors associated with cux1a

Gene Symbol Gene ID Gene Info
cux1a
ENSDARG00000078459 cut-like homeobox 1a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
cux1adr11_v1_chr10_-_33156789_33156789-0.213.9e-02Click!

Activity profile of cux1a motif

Sorted Z-values of cux1a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_-_1625976 2.02 ENSDART00000066621
vmo1b
vitelline membrane outer layer 1 homolog b
chr18_-_40481028 1.52 ENSDART00000134177
zgc:101040
zgc:101040
chr1_-_49932040 1.51 ENSDART00000048281
cyp2u1
cytochrome P450, family 2, subfamily U, polypeptide 1
chr25_+_21324588 1.47 ENSDART00000151842
lrrn3a
leucine rich repeat neuronal 3a
chr3_-_38692920 1.23 ENSDART00000155042
mpp3a
membrane protein, palmitoylated 3a (MAGUK p55 subfamily member 3)
chr10_+_34377697 1.16 ENSDART00000189441
stard13a
StAR-related lipid transfer (START) domain containing 13a
chr16_+_25126935 1.15 ENSDART00000058945
zgc:92590
zgc:92590
chr20_-_18736281 1.12 ENSDART00000142837
enpp5
ectonucleotide pyrophosphatase/phosphodiesterase 5
chr17_+_12159529 1.10 ENSDART00000046802
sccpdha
saccharopine dehydrogenase a
chr16_+_39242339 0.97 ENSDART00000102510
zgc:77056
zgc:77056
chr15_-_9419472 0.97 ENSDART00000122117
sacs
sacsin molecular chaperone
chr23_-_33986762 0.94 ENSDART00000144609
tmed4
transmembrane p24 trafficking protein 4
chr10_+_21786656 0.93 ENSDART00000185851
ENSDART00000167219
pcdh1g26
protocadherin 1 gamma 26
chr9_-_35334642 0.91 ENSDART00000157195
ncam2
neural cell adhesion molecule 2
chr23_-_24047054 0.89 ENSDART00000184308
ENSDART00000185902
CR925720.1

chr17_+_45454943 0.84 ENSDART00000074838
kcnk3b
potassium channel, subfamily K, member 3b
chr6_-_29105727 0.81 ENSDART00000184355
fam69ab
family with sequence similarity 69, member Ab
chr14_-_33083539 0.81 ENSDART00000160173
dlg3
discs, large homolog 3 (Drosophila)
chr12_+_10115964 0.75 ENSDART00000152369
si:dkeyp-118b1.2
si:dkeyp-118b1.2
chr15_-_7598294 0.74 ENSDART00000165898
gbe1b
glucan (1,4-alpha-), branching enzyme 1b
chr14_-_25985698 0.74 ENSDART00000172909
ENSDART00000123053
atox1
antioxidant 1 copper chaperone
chr8_-_24135171 0.73 ENSDART00000112926
adora1b
adenosine A1 receptor b
chr15_-_7598542 0.73 ENSDART00000173092
gbe1b
glucan (1,4-alpha-), branching enzyme 1b
chr4_-_25485404 0.69 ENSDART00000041402
pfkfb3
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr2_+_23007675 0.65 ENSDART00000163649
mknk2a
MAP kinase interacting serine/threonine kinase 2a
chr11_+_41089574 0.65 ENSDART00000170023
phf13
PHD finger protein 13
chr12_-_7607114 0.63 ENSDART00000158095
slc16a9b
solute carrier family 16, member 9b
chr17_+_37249736 0.61 ENSDART00000189686
CR318625.1

chr19_+_14059349 0.61 ENSDART00000166230
tpbga
trophoblast glycoprotein a
chr16_-_25380903 0.60 ENSDART00000086375
ENSDART00000188587
adnp2a
ADNP homeobox 2a
chr17_+_24597001 0.59 ENSDART00000191834
rlf
rearranged L-myc fusion
chr7_-_25895189 0.56 ENSDART00000173599
ENSDART00000079235
ENSDART00000173786
ENSDART00000173602
ENSDART00000079245
ENSDART00000187568
ENSDART00000173505
cd99l2
CD99 molecule-like 2
chr23_+_9353552 0.56 ENSDART00000163298
BX511246.1

chr4_-_52189449 0.56 ENSDART00000192426
BX649431.4

chr23_-_44494401 0.54 ENSDART00000114640
ENSDART00000148532
actl6b
actin-like 6B
chr6_+_38896158 0.53 ENSDART00000029930
ENSDART00000131347
slc48a1b
solute carrier family 48 (heme transporter), member 1b
chr7_-_39751540 0.53 ENSDART00000016803
grpel1
GrpE-like 1, mitochondrial
chr7_+_33152723 0.52 ENSDART00000132658
si:ch211-194p6.10
si:ch211-194p6.10
chr25_-_6082509 0.50 ENSDART00000104755
cpeb1a
cytoplasmic polyadenylation element binding protein 1a
chr21_-_19919918 0.48 ENSDART00000137307
ENSDART00000142523
ENSDART00000065670
ppp1r3b
protein phosphatase 1, regulatory subunit 3B
chr2_-_32513538 0.47 ENSDART00000056640
abcf2a
ATP-binding cassette, sub-family F (GCN20), member 2a
chr8_-_29851706 0.46 ENSDART00000149297
slc20a2
solute carrier family 20 (phosphate transporter), member 2
chr1_-_39976492 0.44 ENSDART00000181680
stox2a
storkhead box 2a
chr5_-_13835461 0.44 ENSDART00000148297
ENSDART00000114841
add2
adducin 2 (beta)
chr12_-_9700605 0.43 ENSDART00000161063
heatr1
HEAT repeat containing 1
chr11_-_20956309 0.43 ENSDART00000188659
CABZ01008739.1

chr5_-_26893310 0.41 ENSDART00000126669
lman2lb
lectin, mannose-binding 2-like b
chr11_+_16152316 0.40 ENSDART00000081054
tada3l
transcriptional adaptor 3 (NGG1 homolog, yeast)-like
chr3_-_30152836 0.37 ENSDART00000165920
nucb1
nucleobindin 1
chr15_-_16704417 0.37 ENSDART00000155163
caln1
calneuron 1
chr11_-_12705608 0.37 ENSDART00000158937
ENSDART00000114391
zgc:174353
zgc:174353
chr7_+_29951997 0.36 ENSDART00000173453
tpma
alpha-tropomyosin
chr3_-_30153242 0.36 ENSDART00000077089
nucb1
nucleobindin 1
chr14_-_32486757 0.35 ENSDART00000148830
mcf2a
MCF.2 cell line derived transforming sequence a
chr10_-_11397590 0.35 ENSDART00000064212
srek1ip1
SREK1-interacting protein 1
chr4_-_51460013 0.32 ENSDART00000193382
CR628395.1

chr17_+_11507131 0.31 ENSDART00000013170
kif26ba
kinesin family member 26Ba
chr11_-_12673637 0.31 ENSDART00000186058
CR450764.7

chr22_+_8012532 0.30 ENSDART00000159439
CABZ01034698.1

chr12_-_19091214 0.28 ENSDART00000153225
si:ch73-139e5.4
si:ch73-139e5.4
chr13_-_36264861 0.28 ENSDART00000100204
slc8a3
solute carrier family 8 (sodium/calcium exchanger), member 3
chr16_+_4658250 0.27 ENSDART00000006212
LIN28A
si:ch1073-284b18.2
chr24_+_35881124 0.26 ENSDART00000143015
klhl14
kelch-like family member 14
chr22_-_15562933 0.24 ENSDART00000141528
ankmy1
ankyrin repeat and MYND domain containing 1
chr12_+_38770654 0.24 ENSDART00000155367
kif19
kinesin family member 19
chr2_-_37353098 0.23 ENSDART00000056522
skila
SKI-like proto-oncogene a
chr16_-_12095144 0.21 ENSDART00000145106
pex5
peroxisomal biogenesis factor 5
chr12_+_14149686 0.20 ENSDART00000123741
kbtbd2
kelch repeat and BTB (POZ) domain containing 2
chr13_-_4664403 0.17 ENSDART00000023803
ENSDART00000177957
c1d
C1D nuclear receptor corepressor
chr24_+_31374324 0.16 ENSDART00000172335
ENSDART00000163162
cpne3
copine III
chr3_-_31079186 0.15 ENSDART00000145636
ENSDART00000140569
ELOB (1 of many)
elob
elongin B
elongin B
chr7_-_56766973 0.13 ENSDART00000020967
csnk2a2a
casein kinase 2, alpha prime polypeptide a
chr8_-_19451487 0.13 ENSDART00000184037
zgc:92140
zgc:92140
chr22_+_29067388 0.12 ENSDART00000133673
pimr100
Pim proto-oncogene, serine/threonine kinase, related 100
chr20_+_32406011 0.12 ENSDART00000018640
ENSDART00000137910
snx3
sorting nexin 3
chr2_+_17451656 0.10 ENSDART00000163620
BX640408.1

chr10_+_44057177 0.10 ENSDART00000164610
grk3
G protein-coupled receptor kinase 3
chr5_+_37729207 0.10 ENSDART00000184378
cdc42ep2
CDC42 effector protein (Rho GTPase binding) 2
chr2_-_51275873 0.09 ENSDART00000168019
si:ch211-215e19.4
si:ch211-215e19.4
chr2_+_7715810 0.08 ENSDART00000130781
eif4a2
eukaryotic translation initiation factor 4A, isoform 2
chr11_-_16152105 0.08 ENSDART00000081062
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr17_+_48164536 0.07 ENSDART00000161750
ENSDART00000156923
plekhd1
pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr16_+_19014886 0.07 ENSDART00000079298
si:ch211-254p10.2
si:ch211-254p10.2
chr22_+_21516689 0.06 ENSDART00000105550
ENSDART00000136374
mier2
mesoderm induction early response 1, family member 2
chr11_-_16152400 0.05 ENSDART00000123665
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr17_-_30839338 0.05 ENSDART00000139707
gdf7
growth differentiation factor 7
chr7_-_12789251 0.04 ENSDART00000052750
adamtsl3
ADAMTS-like 3
chr11_+_1522136 0.03 ENSDART00000002318
srsf6b
serine/arginine-rich splicing factor 6b
chr5_+_41996889 0.02 ENSDART00000097580
pigl
phosphatidylinositol glycan anchor biosynthesis, class L
chr18_+_45571378 0.01 ENSDART00000077251
kifc3
kinesin family member C3
chr7_+_49272702 0.01 ENSDART00000083389
abtb2a
ankyrin repeat and BTB (POZ) domain containing 2a
chr2_-_37352514 0.01 ENSDART00000140498
ENSDART00000186422
skila
SKI-like proto-oncogene a
chr7_+_29863548 0.00 ENSDART00000136555
ENSDART00000134068
tln2a
talin 2a

Network of associatons between targets according to the STRING database.

First level regulatory network of cux1a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0005981 regulation of glycogen catabolic process(GO:0005981)
0.2 0.6 GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.1 0.7 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.1 0.7 GO:0001973 adenosine receptor signaling pathway(GO:0001973) purinergic receptor signaling pathway(GO:0035587) G-protein coupled purinergic receptor signaling pathway(GO:0035588)
0.1 0.4 GO:0045943 positive regulation of transcription from RNA polymerase I promoter(GO:0045943)
0.1 0.5 GO:1901678 heme transport(GO:0015886) iron coordination entity transport(GO:1901678)
0.0 0.6 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.0 0.7 GO:0006003 fructose 2,6-bisphosphate metabolic process(GO:0006003)
0.0 0.5 GO:2000766 negative regulation of cytoplasmic translation(GO:2000766)
0.0 0.3 GO:0099514 anterograde synaptic vesicle transport(GO:0048490) synaptic vesicle cytoskeletal transport(GO:0099514) synaptic vesicle transport along microtubule(GO:0099517)
0.0 0.8 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 1.5 GO:0009250 glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250)
0.0 0.9 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.5 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 1.5 GO:0017144 drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738)
0.0 0.6 GO:0043249 erythrocyte maturation(GO:0043249)
0.0 0.2 GO:0022615 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.5 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.0 0.8 GO:0097120 receptor localization to synapse(GO:0097120)
0.0 1.3 GO:0007030 Golgi organization(GO:0007030)
0.0 1.2 GO:0035023 regulation of Rho protein signal transduction(GO:0035023)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.4 GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671)
0.0 0.5 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.0 2.1 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.5 GO:0035267 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.5 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.0 0.2 GO:0030891 VCB complex(GO:0030891)
0.0 0.4 GO:0030686 90S preribosome(GO:0030686)
0.0 0.1 GO:0030904 retromer complex(GO:0030904)
0.0 0.2 GO:0000178 exosome (RNase complex)(GO:0000178)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.5 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.3 0.8 GO:0005252 open rectifier potassium channel activity(GO:0005252)
0.3 1.5 GO:0004060 arylamine N-acetyltransferase activity(GO:0004060)
0.1 0.7 GO:0016531 copper chaperone activity(GO:0016531)
0.1 0.7 GO:0001609 G-protein coupled adenosine receptor activity(GO:0001609)
0.1 0.5 GO:0015232 heme transporter activity(GO:0015232)
0.1 1.0 GO:0030544 Hsp70 protein binding(GO:0030544)
0.1 0.5 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.7 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)
0.0 0.5 GO:2001069 glycogen binding(GO:2001069)
0.0 0.4 GO:0005537 mannose binding(GO:0005537)
0.0 0.5 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 0.5 GO:0000900 translation repressor activity, nucleic acid binding(GO:0000900)
0.0 0.2 GO:0005052 peroxisome matrix targeting signal-1 binding(GO:0005052)
0.0 0.5 GO:0070492 oligosaccharide binding(GO:0070492)
0.0 1.5 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712)
0.0 0.4 GO:0030515 snoRNA binding(GO:0030515)
0.0 0.3 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.0 0.7 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.5 REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE Genes involved in Cytochrome P450 - arranged by substrate type
0.1 0.8 REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS Genes involved in Ionotropic activity of Kainate Receptors
0.0 0.7 REACTOME GLYCOLYSIS Genes involved in Glycolysis
0.0 0.3 REACTOME PLATELET CALCIUM HOMEOSTASIS Genes involved in Platelet calcium homeostasis
0.0 0.5 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import