PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
EBF1 (1 of many) | dr11_v1_chr21_-_33995213_33995213 | -0.28 | 6.5e-03 | Click! |
ebf3a | dr11_v1_chr14_+_35023923_35023923 | 0.17 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr22_+_11756040 Show fit | 15.44 |
ENSDART00000105808
|
keratin 97 |
|
chr22_+_11775269 Show fit | 10.71 |
ENSDART00000140272
|
keratin 96 |
|
chr9_-_22831836 Show fit | 8.60 |
ENSDART00000142585
|
nebulin |
|
chr7_+_66822229 Show fit | 8.09 |
ENSDART00000112109
|
lymphatic vessel endothelial hyaluronic receptor 1a |
|
chr8_-_1051438 Show fit | 5.97 |
ENSDART00000067093
ENSDART00000170737 |
SET and MYND domain containing 1b |
|
chr19_-_35596207 Show fit | 5.89 |
ENSDART00000136811
|
collagen, type VIII, alpha 2 |
|
chr10_-_25769334 Show fit | 5.64 |
ENSDART00000134176
|
periostin, osteoblast specific factor a |
|
chr10_+_158590 Show fit | 5.41 |
ENSDART00000081982
|
potassium voltage-gated channel subfamily J member 15 |
|
chr14_-_21959712 Show fit | 5.40 |
ENSDART00000021417
|
purinergic receptor P2X, ligand-gated ion channel, 3a |
|
chr12_-_46176115 Show fit | 4.88 |
ENSDART00000152848
|
si:ch211-226h7.8 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.5 | GO:0030198 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
1.4 | 8.6 | GO:0071691 | cardiac muscle thin filament assembly(GO:0071691) |
0.1 | 8.1 | GO:0001946 | lymphangiogenesis(GO:0001946) |
1.3 | 6.7 | GO:0038098 | sequestering of BMP from receptor via BMP binding(GO:0038098) |
0.5 | 6.0 | GO:0030240 | skeletal muscle thin filament assembly(GO:0030240) |
0.4 | 5.4 | GO:0033198 | response to ATP(GO:0033198) |
0.6 | 4.8 | GO:0030643 | cellular anion homeostasis(GO:0030002) cellular monovalent inorganic anion homeostasis(GO:0030320) cellular phosphate ion homeostasis(GO:0030643) cellular divalent inorganic anion homeostasis(GO:0072501) cellular trivalent inorganic anion homeostasis(GO:0072502) |
0.0 | 4.7 | GO:1990266 | neutrophil migration(GO:1990266) |
1.0 | 4.2 | GO:0031448 | regulation of twitch skeletal muscle contraction(GO:0014724) regulation of fast-twitch skeletal muscle fiber contraction(GO:0031446) positive regulation of fast-twitch skeletal muscle fiber contraction(GO:0031448) negative regulation of striated muscle contraction(GO:0045988) relaxation of skeletal muscle(GO:0090076) |
0.1 | 4.0 | GO:0045089 | positive regulation of innate immune response(GO:0045089) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 22.1 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 18.9 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 12.4 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 10.5 | GO:0031012 | extracellular matrix(GO:0031012) |
0.3 | 6.1 | GO:0031430 | M band(GO:0031430) |
0.3 | 5.4 | GO:0031229 | integral component of nuclear inner membrane(GO:0005639) intrinsic component of nuclear inner membrane(GO:0031229) nuclear membrane part(GO:0044453) |
0.0 | 4.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
1.0 | 4.2 | GO:0031673 | H zone(GO:0031673) |
0.0 | 4.0 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 3.9 | GO:0009986 | cell surface(GO:0009986) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 19.9 | GO:0005198 | structural molecule activity(GO:0005198) |
0.1 | 10.9 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 10.0 | GO:0051015 | actin filament binding(GO:0051015) |
0.2 | 8.1 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.8 | 6.7 | GO:0036122 | BMP binding(GO:0036122) |
0.3 | 6.0 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.4 | 5.4 | GO:0004931 | extracellular ATP-gated cation channel activity(GO:0004931) ATP-gated ion channel activity(GO:0035381) |
0.0 | 5.1 | GO:0050839 | cell adhesion molecule binding(GO:0050839) |
0.4 | 3.4 | GO:0005105 | type 1 fibroblast growth factor receptor binding(GO:0005105) |
0.0 | 3.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.9 | NABA COLLAGENS | Genes encoding collagen proteins |
0.3 | 5.4 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.1 | 3.4 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 3.2 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 3.1 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 2.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 2.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 1.2 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 1.1 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 8.6 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 5.9 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 4.9 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.2 | 4.2 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.6 | 3.4 | REACTOME SIGNALING BY ACTIVATED POINT MUTANTS OF FGFR1 | Genes involved in Signaling by activated point mutants of FGFR1 |
0.1 | 1.9 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 1.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.0 | 1.5 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 1.2 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.1 | 1.1 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |