PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
si:ch211-153j24.3 | dr11_v1_chr20_+_46560258_46560258 | -0.52 | 5.6e-08 | Click! |
fosl2 | dr11_v1_chr17_+_41302660_41302660 | 0.13 | 2.0e-01 | Click! |
fosb | dr11_v1_chr18_+_36770166_36770166 | 0.08 | 4.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr18_-_5595546 Show fit | 13.91 |
ENSDART00000191825
|
cytochrome P450, family 1, subfamily A |
|
chr25_-_22187397 Show fit | 13.22 |
ENSDART00000123211
ENSDART00000139110 |
plakophilin 3a |
|
chr25_+_13191391 Show fit | 12.46 |
ENSDART00000109937
|
si:ch211-147m6.2 |
|
chr21_-_2415808 Show fit | 11.70 |
ENSDART00000171179
|
si:ch211-241b2.5 |
|
chr16_+_23403602 Show fit | 10.99 |
ENSDART00000159848
|
S100 calcium binding protein W |
|
chr14_-_11456724 Show fit | 10.27 |
ENSDART00000110424
|
si:ch211-153b23.4 |
|
chr1_+_14253118 Show fit | 10.17 |
ENSDART00000161996
|
chemokine (C-X-C motif) ligand 8a |
|
chr16_-_22930925 Show fit | 9.56 |
ENSDART00000133819
|
si:dkey-246i14.3 |
|
chr7_+_25033924 Show fit | 9.47 |
ENSDART00000170873
|
sb:cb1058 |
|
chr11_-_24681292 Show fit | 9.35 |
ENSDART00000089601
|
olfactomedin-like 3b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 18.5 | GO:0007043 | cell-cell junction assembly(GO:0007043) |
0.2 | 15.1 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
0.1 | 13.9 | GO:0071466 | cellular response to xenobiotic stimulus(GO:0071466) |
1.1 | 11.7 | GO:0031294 | lymphocyte costimulation(GO:0031294) T cell costimulation(GO:0031295) |
1.0 | 10.3 | GO:0006450 | regulation of translational fidelity(GO:0006450) |
3.4 | 10.2 | GO:0002676 | granuloma formation(GO:0002432) chronic inflammatory response(GO:0002544) regulation of granuloma formation(GO:0002631) regulation of chronic inflammatory response(GO:0002676) |
0.6 | 9.5 | GO:0043154 | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process(GO:0043154) |
0.4 | 8.4 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
0.3 | 7.9 | GO:0001843 | neural tube closure(GO:0001843) tube closure(GO:0060606) |
1.6 | 7.8 | GO:0035988 | chondrocyte proliferation(GO:0035988) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 35.6 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 26.7 | GO:0005615 | extracellular space(GO:0005615) |
1.2 | 23.2 | GO:0030057 | desmosome(GO:0030057) |
0.1 | 18.6 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.2 | 7.9 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 7.7 | GO:0031201 | SNARE complex(GO:0031201) |
0.5 | 7.5 | GO:0002102 | podosome(GO:0002102) |
0.4 | 7.3 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.1 | 7.0 | GO:0016607 | nuclear speck(GO:0016607) |
0.2 | 6.9 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 24.6 | GO:0045296 | cadherin binding(GO:0045296) |
0.7 | 19.7 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.1 | 18.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 14.7 | GO:0051015 | actin filament binding(GO:0051015) |
0.4 | 14.0 | GO:0019957 | C-C chemokine binding(GO:0019957) |
2.3 | 13.9 | GO:0070330 | aromatase activity(GO:0070330) |
0.5 | 11.0 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.2 | 10.3 | GO:0000049 | tRNA binding(GO:0000049) |
2.5 | 10.2 | GO:0005153 | interleukin-8 receptor binding(GO:0005153) |
0.0 | 9.0 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.4 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.3 | 6.1 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 5.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.2 | 5.0 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 4.8 | PID TNF PATHWAY | TNF receptor signaling pathway |
0.0 | 4.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.3 | 3.9 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 3.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 3.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 3.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 6.1 | REACTOME NFKB IS ACTIVATED AND SIGNALS SURVIVAL | Genes involved in NF-kB is activated and signals survival |
0.1 | 5.3 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.4 | 3.9 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.0 | 3.9 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.2 | 3.6 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.3 | 3.4 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.0 | 3.1 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 3.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.4 | 2.9 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.1 | 2.8 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |