PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zgc:91944 | dr11_v1_chr19_-_32600823_32600868 | -0.63 | 1.4e-11 | Click! |
hmbox1a | dr11_v1_chr17_-_16324565_16324565 | -0.45 | 4.9e-06 | Click! |
CABZ01078261.1 | dr11_v1_chr20_+_49787584_49787584 | -0.19 | 6.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_31891110 Show fit | 13.53 |
ENSDART00000173883
|
myosin binding protein C, cardiac |
|
chr7_-_71758307 Show fit | 12.65 |
ENSDART00000161067
ENSDART00000165253 |
myomesin 1b |
|
chr2_+_55982300 Show fit | 12.26 |
ENSDART00000183903
|
nicotinamide riboside kinase 2 |
|
chr15_-_17074393 Show fit | 11.29 |
ENSDART00000155526
|
si:ch211-24o10.6 |
|
chr14_+_21222287 Show fit | 11.23 |
ENSDART00000159905
|
si:ch211-175m2.4 |
|
chr7_+_41295974 Show fit | 10.88 |
ENSDART00000173568
ENSDART00000173544 |
si:dkey-86l18.10 |
|
chr14_+_11458044 Show fit | 10.77 |
ENSDART00000186425
|
si:ch211-153b23.5 |
|
chr7_-_71758613 Show fit | 10.37 |
ENSDART00000166724
|
myomesin 1b |
|
chr4_+_72798545 Show fit | 10.02 |
ENSDART00000181727
|
myelin regulatory factor-like |
|
chr1_+_10051763 Show fit | 9.91 |
ENSDART00000011701
|
fibrinogen beta chain |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 23.0 | GO:0006936 | muscle contraction(GO:0006936) |
0.0 | 19.7 | GO:0006508 | proteolysis(GO:0006508) |
2.7 | 13.5 | GO:0003210 | cardiac atrium formation(GO:0003210) |
0.5 | 11.9 | GO:0035469 | determination of pancreatic left/right asymmetry(GO:0035469) |
0.7 | 9.9 | GO:0072378 | blood coagulation, fibrin clot formation(GO:0072378) |
1.4 | 9.7 | GO:0019375 | galactosylceramide biosynthetic process(GO:0006682) galactolipid biosynthetic process(GO:0019375) |
0.2 | 9.7 | GO:0048920 | posterior lateral line neuromast primordium migration(GO:0048920) |
0.2 | 9.7 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
0.6 | 9.5 | GO:0001952 | regulation of cell-matrix adhesion(GO:0001952) |
0.0 | 9.4 | GO:0006914 | autophagy(GO:0006914) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 39.2 | GO:0005576 | extracellular region(GO:0005576) |
0.5 | 24.9 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
1.1 | 23.0 | GO:0031430 | M band(GO:0031430) |
0.0 | 18.4 | GO:0000139 | Golgi membrane(GO:0000139) |
0.1 | 17.0 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 13.0 | GO:0005925 | cell-substrate adherens junction(GO:0005924) focal adhesion(GO:0005925) |
0.0 | 10.4 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 10.4 | GO:0031012 | extracellular matrix(GO:0031012) |
3.3 | 9.9 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.3 | 9.5 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 29.3 | GO:0019900 | kinase binding(GO:0019900) |
0.1 | 24.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 21.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
2.5 | 17.7 | GO:0050262 | ribosylnicotinamide kinase activity(GO:0050262) |
0.3 | 17.5 | GO:0019843 | rRNA binding(GO:0019843) |
0.1 | 16.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.0 | 16.3 | GO:0005102 | receptor binding(GO:0005102) |
1.2 | 13.5 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.1 | 11.9 | GO:0003774 | motor activity(GO:0003774) |
0.1 | 10.3 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 12.0 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.6 | 9.9 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.1 | 8.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 8.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 7.9 | PID P73PATHWAY | p73 transcription factor network |
0.2 | 6.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.2 | 6.1 | PID ILK PATHWAY | Integrin-linked kinase signaling |
1.2 | 5.8 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
0.1 | 5.8 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
0.0 | 3.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 24.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
1.3 | 16.0 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.7 | 13.3 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.6 | 9.9 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
0.5 | 9.3 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
1.2 | 8.2 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.3 | 8.2 | REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT | Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT) |
0.9 | 6.8 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.6 | 6.8 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.5 | 6.8 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |