PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
si:ch211-117k10.3 | dr11_v1_chr11_-_38513978_38513978 | -0.59 | 4.9e-10 | Click! |
klf15 | dr11_v1_chr23_-_35195908_35195908 | 0.51 | 2.0e-07 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_38110779 Show fit | 27.00 |
ENSDART00000147783
|
c-reactive protein, pentraxin-related |
|
chr4_+_55758103 Show fit | 23.18 |
ENSDART00000185964
|
|
|
chr19_+_48117995 Show fit | 20.08 |
ENSDART00000170865
|
NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 1 |
|
chr3_-_16289826 Show fit | 12.92 |
ENSDART00000131972
|
branched chain keto acid dehydrogenase E1, beta polypeptide, like |
|
chr5_-_16351306 Show fit | 11.34 |
ENSDART00000168643
|
|
|
chr1_-_44638058 Show fit | 10.58 |
ENSDART00000081835
|
solute carrier family 43 (amino acid system L transporter), member 1b |
|
chr5_+_27525477 Show fit | 10.54 |
ENSDART00000051491
|
secreted frizzled-related protein 1a |
|
chr18_-_26715655 Show fit | 9.87 |
ENSDART00000181497
|
MALT paracaspase 3 |
|
chr5_-_69621227 Show fit | 9.05 |
ENSDART00000178543
|
aldehyde dehydrogenase 2 family (mitochondrial), tandem duplicate 2 |
|
chr18_-_26715156 Show fit | 8.94 |
ENSDART00000142043
|
MALT paracaspase 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 20.1 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.3 | 10.6 | GO:0015804 | neutral amino acid transport(GO:0015804) |
0.4 | 10.5 | GO:0030513 | positive regulation of BMP signaling pathway(GO:0030513) |
0.1 | 9.0 | GO:0042493 | response to drug(GO:0042493) |
0.1 | 8.8 | GO:0007098 | centrosome cycle(GO:0007098) |
1.6 | 8.0 | GO:0002159 | desmosome assembly(GO:0002159) |
0.0 | 7.6 | GO:0006470 | protein dephosphorylation(GO:0006470) |
2.3 | 6.9 | GO:0019695 | choline metabolic process(GO:0019695) |
1.7 | 6.9 | GO:0051610 | serotonin transport(GO:0006837) serotonin uptake(GO:0051610) |
0.3 | 6.4 | GO:0018149 | peptide cross-linking(GO:0018149) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 19.1 | GO:0005615 | extracellular space(GO:0005615) |
0.5 | 10.1 | GO:0030057 | desmosome(GO:0030057) |
0.1 | 8.8 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 6.4 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.1 | 5.3 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.8 | 4.8 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.1 | 4.6 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.0 | 4.2 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 4.0 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.1 | 3.4 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 27.0 | GO:0015485 | cholesterol binding(GO:0015485) |
0.7 | 20.1 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.1 | 18.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.5 | 16.4 | GO:0017147 | Wnt-protein binding(GO:0017147) |
0.7 | 12.9 | GO:0033691 | sialic acid binding(GO:0033691) |
0.3 | 10.6 | GO:0015175 | neutral amino acid transmembrane transporter activity(GO:0015175) |
0.6 | 9.0 | GO:0004029 | aldehyde dehydrogenase (NAD) activity(GO:0004029) |
0.5 | 8.8 | GO:0005080 | protein kinase C binding(GO:0005080) |
0.1 | 8.1 | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity(GO:0008138) |
0.9 | 8.0 | GO:0045294 | alpha-catenin binding(GO:0045294) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 34.5 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 5.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 3.0 | PID S1P S1P2 PATHWAY | S1P2 pathway |
0.4 | 2.7 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 2.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.0 | 2.6 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.7 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.0 | 1.7 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.1 | 1.2 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 27.0 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 4.3 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.2 | 4.1 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.3 | 4.0 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.3 | 3.5 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
0.1 | 3.0 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.2 | 2.9 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.1 | 1.9 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 1.8 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.0 | 1.7 | REACTOME SIGNALING BY ERBB4 | Genes involved in Signaling by ERBB4 |