PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene Symbol | Gene ID | Gene Info |
---|---|---|
mafaa
|
ENSDARG00000044155 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Aa |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mafaa | dr11_v1_chr6_-_32703317_32703317 | -0.24 | 1.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_39313027 | 12.98 |
ENSDART00000012644
|
krt4
|
keratin 4 |
chr13_+_4671698 | 10.83 |
ENSDART00000164617
ENSDART00000128494 ENSDART00000165776 |
pla2g12b
|
phospholipase A2, group XIIB |
chr2_-_22688651 | 10.75 |
ENSDART00000013863
|
agxtb
|
alanine-glyoxylate aminotransferase b |
chr4_-_8030583 | 8.92 |
ENSDART00000113628
|
si:ch211-240l19.8
|
si:ch211-240l19.8 |
chr25_+_31264155 | 8.48 |
ENSDART00000012256
|
tnni2a.3
|
troponin I type 2a (skeletal, fast), tandem duplicate 3 |
chr10_+_19596214 | 8.10 |
ENSDART00000183110
|
CABZ01059626.1
|
|
chr8_-_50482781 | 6.87 |
ENSDART00000056361
|
ido1
|
indoleamine 2,3-dioxygenase 1 |
chr7_+_6969909 | 6.48 |
ENSDART00000189886
|
actn3b
|
actinin alpha 3b |
chr7_+_27603211 | 6.46 |
ENSDART00000148782
|
cyp2r1
|
cytochrome P450, family 2, subfamily R, polypeptide 1 |
chr1_+_59090743 | 5.26 |
ENSDART00000100199
|
mfap4
|
microfibril associated protein 4 |
chr1_+_59090583 | 5.21 |
ENSDART00000150658
|
mfap4
|
microfibril associated protein 4 |
chr10_-_57270 | 5.18 |
ENSDART00000058411
|
hlcs
|
holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) |
chr1_+_59090972 | 4.99 |
ENSDART00000171497
|
mfap4
|
microfibril associated protein 4 |
chr3_-_1388936 | 4.03 |
ENSDART00000171278
|
ddx47
|
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 |
chr8_+_50534948 | 3.90 |
ENSDART00000174435
|
PEBP4
|
phosphatidylethanolamine binding protein 4 |
chr16_-_46567344 | 3.87 |
ENSDART00000127721
|
si:dkey-152b24.7
|
si:dkey-152b24.7 |
chr2_-_37465517 | 3.72 |
ENSDART00000139983
|
si:dkey-57k2.6
|
si:dkey-57k2.6 |
chr24_+_6353394 | 3.39 |
ENSDART00000165118
|
CR352329.1
|
|
chr20_-_22476255 | 3.24 |
ENSDART00000103510
|
pdgfra
|
platelet-derived growth factor receptor, alpha polypeptide |
chr11_+_6115621 | 3.24 |
ENSDART00000165031
ENSDART00000027666 ENSDART00000161458 |
nr2f6b
|
nuclear receptor subfamily 2, group F, member 6b |
chr4_-_8040436 | 3.12 |
ENSDART00000113033
|
si:ch211-240l19.6
|
si:ch211-240l19.6 |
chr6_+_42475730 | 3.10 |
ENSDART00000150226
|
mst1ra
|
macrophage stimulating 1 receptor a |
chr20_-_23440955 | 2.92 |
ENSDART00000153386
|
slc10a4
|
solute carrier family 10, member 4 |
chr5_-_23795688 | 2.89 |
ENSDART00000099084
|
gbgt1l4
|
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4 |
chr25_-_27842654 | 2.86 |
ENSDART00000154852
ENSDART00000156906 |
asb15a
|
ankyrin repeat and SOCS box containing 15a |
chr19_-_5332784 | 2.78 |
ENSDART00000010373
|
krt1-19d
|
keratin, type 1, gene 19d |
chr22_+_635813 | 2.75 |
ENSDART00000179067
|
CU856139.1
|
|
chr5_-_33230794 | 2.54 |
ENSDART00000144273
|
kank1b
|
KN motif and ankyrin repeat domains 1b |
chr14_+_40641350 | 2.52 |
ENSDART00000074506
|
tnmd
|
tenomodulin |
chr1_+_52392511 | 2.50 |
ENSDART00000144025
|
si:ch211-217k17.8
|
si:ch211-217k17.8 |
chr25_+_3217419 | 2.47 |
ENSDART00000104859
|
rccd1
|
RCC1 domain containing 1 |
chr24_+_80653 | 2.37 |
ENSDART00000158473
ENSDART00000129135 |
reck
|
reversion-inducing-cysteine-rich protein with kazal motifs |
chr22_+_21305682 | 2.28 |
ENSDART00000023521
|
odf3l2
|
outer dense fiber of sperm tails 3-like 2 |
chr24_-_6029314 | 2.20 |
ENSDART00000136155
|
ftr60
|
finTRIM family, member 60 |
chr19_-_3777217 | 2.13 |
ENSDART00000160510
|
si:dkey-206d17.15
|
si:dkey-206d17.15 |
chr2_+_38161318 | 2.13 |
ENSDART00000044264
|
mmp14b
|
matrix metallopeptidase 14b (membrane-inserted) |
chr20_+_54323218 | 2.00 |
ENSDART00000191096
|
CABZ01077555.1
|
|
chr3_-_10677890 | 2.00 |
ENSDART00000155382
ENSDART00000171319 |
si:ch1073-144j5.2
|
si:ch1073-144j5.2 |
chr3_-_62417677 | 1.98 |
ENSDART00000101888
|
sstr2b
|
somatostatin receptor 2b |
chr16_+_42465518 | 1.91 |
ENSDART00000058699
|
si:ch211-215k15.4
|
si:ch211-215k15.4 |
chr13_-_28272299 | 1.81 |
ENSDART00000006393
|
tlx1
|
T cell leukemia homeobox 1 |
chr24_+_37709191 | 1.81 |
ENSDART00000066558
|
decr2
|
2,4-dienoyl CoA reductase 2, peroxisomal |
chr19_-_48010490 | 1.80 |
ENSDART00000159938
|
FBXL19
|
zgc:158376 |
chr21_-_1642739 | 1.75 |
ENSDART00000151118
|
zgc:152948
|
zgc:152948 |
chr13_-_301309 | 1.71 |
ENSDART00000131747
|
chs1
|
chitin synthase 1 |
chr5_-_5326010 | 1.55 |
ENSDART00000161946
|
pbx3a
|
pre-B-cell leukemia homeobox 3a |
chr12_-_11649690 | 1.55 |
ENSDART00000149713
|
btbd16
|
BTB (POZ) domain containing 16 |
chr23_+_3538463 | 1.53 |
ENSDART00000172758
|
si:dkey-9l20.3
|
si:dkey-9l20.3 |
chr6_-_33913184 | 1.53 |
ENSDART00000146373
|
nasp
|
nuclear autoantigenic sperm protein (histone-binding) |
chr9_-_1639884 | 1.51 |
ENSDART00000062850
ENSDART00000150947 |
agps
|
alkylglycerone phosphate synthase |
chr21_+_18885258 | 1.48 |
ENSDART00000169078
|
si:dkey-65l23.2
|
si:dkey-65l23.2 |
chr4_+_56422336 | 1.48 |
ENSDART00000159185
|
si:dkey-65l23.2
|
si:dkey-65l23.2 |
chr8_+_43078044 | 1.48 |
ENSDART00000147872
|
si:dkey-65l23.2
|
si:dkey-65l23.2 |
chr25_-_3217115 | 1.45 |
ENSDART00000032390
|
gtf2h1
|
general transcription factor IIH, polypeptide 1 |
chr6_-_131401 | 1.44 |
ENSDART00000151251
|
LRRC8E
|
si:zfos-323e3.4 |
chr22_-_27709692 | 1.39 |
ENSDART00000172458
|
CR547131.1
|
|
chr13_-_50463938 | 1.36 |
ENSDART00000083857
|
ccnj
|
cyclin J |
chr22_+_19283978 | 1.31 |
ENSDART00000131487
ENSDART00000143589 |
si:dkey-21e2.14
|
si:dkey-21e2.14 |
chr20_-_14321359 | 1.28 |
ENSDART00000145104
|
dlgap2b
|
discs, large (Drosophila) homolog-associated protein 2b |
chr8_+_52479026 | 1.26 |
ENSDART00000162885
|
FO704661.1
|
Danio rerio gamma-glutamyl hydrolase (LOC553228), mRNA. |
chr15_-_17138640 | 1.23 |
ENSDART00000080777
|
mrpl28
|
mitochondrial ribosomal protein L28 |
chr19_-_28788466 | 1.23 |
ENSDART00000151793
|
sox4a
|
SRY (sex determining region Y)-box 4a |
chr3_-_34055745 | 1.22 |
ENSDART00000151652
|
ighv2-2
|
immunoglobulin heavy variable 2-2 |
chr4_-_50926767 | 1.22 |
ENSDART00000183430
|
si:ch211-208f21.3
|
si:ch211-208f21.3 |
chr14_+_146857 | 1.16 |
ENSDART00000122521
|
CABZ01088229.1
|
|
chr17_-_42798332 | 1.15 |
ENSDART00000189885
|
prkd3
|
protein kinase D3 |
chr21_+_45841731 | 1.14 |
ENSDART00000038657
|
faxdc2
|
fatty acid hydroxylase domain containing 2 |
chr6_-_25371196 | 1.10 |
ENSDART00000187291
|
PKN2 (1 of many)
|
zgc:153916 |
chr15_+_26940569 | 1.00 |
ENSDART00000189636
ENSDART00000077172 |
bcas3
|
breast carcinoma amplified sequence 3 |
chr4_-_72468168 | 1.00 |
ENSDART00000182995
ENSDART00000174067 |
CR788316.1
|
|
chr23_+_42652877 | 0.91 |
ENSDART00000035654
|
cyp2ae1
|
cytochrome P450, family 2, subfamily AE, polypeptide 1 |
chr11_+_25276748 | 0.88 |
ENSDART00000126211
|
cyldb
|
cylindromatosis (turban tumor syndrome), b |
chr18_-_48745517 | 0.87 |
ENSDART00000097259
|
st3gal4
|
ST3 beta-galactoside alpha-2,3-sialyltransferase 4 |
chr20_-_39391833 | 0.87 |
ENSDART00000135149
|
si:dkey-217m5.8
|
si:dkey-217m5.8 |
chr4_-_14486822 | 0.86 |
ENSDART00000048821
|
plxnb2a
|
plexin b2a |
chr8_-_3336273 | 0.84 |
ENSDART00000081160
|
zgc:173737
|
zgc:173737 |
chr2_-_57707039 | 0.80 |
ENSDART00000097685
|
CABZ01060891.1
|
|
chr6_+_58508420 | 0.77 |
ENSDART00000153740
|
chrna4a
|
cholinergic receptor, nicotinic, alpha 4a |
chr13_+_6295173 | 0.64 |
ENSDART00000163855
|
angpt2a
|
angiopoietin 2a |
chr21_-_17037907 | 0.64 |
ENSDART00000101263
|
ube2g1b
|
ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast) |
chr3_+_26322596 | 0.57 |
ENSDART00000172700
|
si:ch211-156b7.5
|
si:ch211-156b7.5 |
chr4_+_19700308 | 0.51 |
ENSDART00000027919
|
pax4
|
paired box 4 |
chr22_+_10606863 | 0.50 |
ENSDART00000147975
|
rad54l2
|
RAD54 like 2 |
chr3_+_8826905 | 0.48 |
ENSDART00000167474
ENSDART00000168088 |
si:dkeyp-30d6.2
|
si:dkeyp-30d6.2 |
chr23_+_12916062 | 0.46 |
ENSDART00000144268
|
si:dkey-150i13.2
|
si:dkey-150i13.2 |
chr16_+_4658250 | 0.42 |
ENSDART00000006212
|
LIN28A
|
si:ch1073-284b18.2 |
chr17_-_20202725 | 0.38 |
ENSDART00000133650
|
ecd
|
ecdysoneless homolog (Drosophila) |
chr12_-_19119176 | 0.30 |
ENSDART00000149180
|
aco2
|
aconitase 2, mitochondrial |
chr2_-_37896965 | 0.28 |
ENSDART00000129852
|
hbl1
|
hexose-binding lectin 1 |
chr24_-_41312459 | 0.23 |
ENSDART00000041349
|
crygn2
|
crystallin, gamma N2 |
chr7_-_7493758 | 0.17 |
ENSDART00000036703
|
pfdn2
|
prefoldin subunit 2 |
chr8_-_2591654 | 0.07 |
ENSDART00000049109
|
seta
|
SET nuclear proto-oncogene a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 10.7 | GO:0006545 | glycine biosynthetic process(GO:0006545) |
1.1 | 6.5 | GO:0070640 | vitamin D3 metabolic process(GO:0070640) cellular response to vitamin D(GO:0071305) |
1.0 | 15.5 | GO:0001867 | complement activation, lectin pathway(GO:0001867) |
0.9 | 6.9 | GO:0019441 | tryptophan catabolic process to kynurenine(GO:0019441) |
0.8 | 2.4 | GO:1905048 | regulation of metallopeptidase activity(GO:1905048) |
0.8 | 10.8 | GO:0032309 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) acylglycerol homeostasis(GO:0055090) triglyceride homeostasis(GO:0070328) arachidonate transport(GO:1903963) |
0.6 | 3.2 | GO:0003261 | cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261) |
0.5 | 1.5 | GO:0046504 | ether lipid biosynthetic process(GO:0008611) glycerol ether biosynthetic process(GO:0046504) cellular lipid biosynthetic process(GO:0097384) ether biosynthetic process(GO:1901503) |
0.5 | 2.5 | GO:0001886 | endothelial cell morphogenesis(GO:0001886) |
0.4 | 1.5 | GO:0034723 | DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723) |
0.3 | 1.7 | GO:0006031 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.2 | 2.1 | GO:0001958 | endochondral ossification(GO:0001958) replacement ossification(GO:0036075) |
0.2 | 2.9 | GO:0015721 | bile acid and bile salt transport(GO:0015721) |
0.2 | 2.0 | GO:0071392 | cellular response to estradiol stimulus(GO:0071392) |
0.2 | 1.1 | GO:0089700 | protein kinase D signaling(GO:0089700) |
0.2 | 3.1 | GO:0051897 | positive regulation of protein kinase B signaling(GO:0051897) |
0.2 | 2.9 | GO:0030259 | lipid glycosylation(GO:0030259) |
0.2 | 8.5 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.2 | 0.6 | GO:0048014 | Tie signaling pathway(GO:0048014) |
0.1 | 1.4 | GO:0070816 | phosphorylation of RNA polymerase II C-terminal domain(GO:0070816) |
0.1 | 0.9 | GO:2001238 | positive regulation of extrinsic apoptotic signaling pathway(GO:2001238) |
0.1 | 1.3 | GO:0098962 | regulation of postsynaptic neurotransmitter receptor activity(GO:0098962) |
0.1 | 0.8 | GO:0035094 | response to nicotine(GO:0035094) |
0.0 | 1.2 | GO:0045879 | negative regulation of smoothened signaling pathway(GO:0045879) |
0.0 | 1.1 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
0.0 | 2.5 | GO:0030837 | negative regulation of actin filament polymerization(GO:0030837) negative regulation of protein polymerization(GO:0032272) |
0.0 | 1.4 | GO:1904029 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
0.0 | 1.2 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
0.0 | 0.5 | GO:1990798 | pancreas regeneration(GO:1990798) |
0.0 | 3.6 | GO:0006364 | rRNA processing(GO:0006364) |
0.0 | 0.9 | GO:0009247 | glycolipid biosynthetic process(GO:0009247) |
0.0 | 4.6 | GO:0016570 | histone modification(GO:0016570) |
0.0 | 3.2 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.0 | 1.5 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 13.0 | GO:0045095 | keratin filament(GO:0045095) |
0.6 | 2.4 | GO:1990909 | Wnt signalosome(GO:1990909) |
0.2 | 1.7 | GO:0030428 | cell septum(GO:0030428) |
0.2 | 1.4 | GO:0000439 | core TFIIH complex(GO:0000439) |
0.2 | 8.5 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 3.1 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.1 | 14.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 2.8 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 1.4 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 1.2 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 1.2 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.0 | 0.2 | GO:0016272 | prefoldin complex(GO:0016272) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.3 | 6.9 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.8 | 3.2 | GO:0048407 | platelet-derived growth factor-activated receptor activity(GO:0005017) platelet-derived growth factor binding(GO:0048407) |
0.5 | 2.9 | GO:0008508 | bile acid:sodium symporter activity(GO:0008508) |
0.4 | 10.8 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.4 | 10.7 | GO:0008483 | transaminase activity(GO:0008483) |
0.2 | 2.0 | GO:0004994 | somatostatin receptor activity(GO:0004994) |
0.2 | 16.7 | GO:0003823 | antigen binding(GO:0003823) |
0.2 | 1.7 | GO:0004100 | chitin synthase activity(GO:0004100) |
0.2 | 2.4 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.2 | 1.1 | GO:0000254 | C-4 methylsterol oxidase activity(GO:0000254) |
0.1 | 6.8 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.1 | 0.3 | GO:0003994 | aconitate hydratase activity(GO:0003994) |
0.1 | 5.2 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
0.1 | 1.8 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.1 | 0.9 | GO:0061578 | Lys63-specific deubiquitinase activity(GO:0061578) |
0.0 | 4.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.0 | 1.1 | GO:0004697 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.0 | 0.8 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
0.0 | 1.5 | GO:0071949 | FAD binding(GO:0071949) |
0.0 | 3.1 | GO:0004714 | transmembrane receptor protein tyrosine kinase activity(GO:0004714) |
0.0 | 3.2 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.0 | 3.9 | GO:0008081 | phosphoric diester hydrolase activity(GO:0008081) |
0.0 | 1.4 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 0.6 | GO:0030971 | receptor tyrosine kinase binding(GO:0030971) |
0.0 | 0.9 | GO:0008373 | sialyltransferase activity(GO:0008373) |
0.0 | 2.1 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.0 | 0.6 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.0 | 0.2 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.1 | 15.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 6.9 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.2 | 6.5 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.1 | 1.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.1 | 1.4 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.0 | 2.4 | REACTOME DOWNSTREAM SIGNAL TRANSDUCTION | Genes involved in Downstream signal transduction |
0.0 | 0.3 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |