PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mef2d | dr11_v1_chr16_-_29146624_29146653 | 0.24 | 2.2e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_11201096 Show fit | 92.87 |
ENSDART00000171916
ENSDART00000171521 ENSDART00000087105 ENSDART00000159603 |
myomesin 2a |
|
chr1_+_7546259 Show fit | 80.74 |
ENSDART00000015732
|
myosin, light polypeptide 3, skeletal muscle |
|
chr3_-_61205711 Show fit | 72.47 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr12_-_17707449 Show fit | 65.02 |
ENSDART00000142427
ENSDART00000034914 |
parvalbumin 3 |
|
chr15_-_23645810 Show fit | 61.04 |
ENSDART00000168845
|
creatine kinase, muscle b |
|
chr12_-_26064105 Show fit | 60.30 |
ENSDART00000168825
|
LIM domain binding 3b |
|
chr18_+_26719787 Show fit | 59.13 |
ENSDART00000141672
|
alpha-kinase 3a |
|
chr12_-_17712393 Show fit | 57.85 |
ENSDART00000143534
ENSDART00000010144 |
parvalbumin 2 |
|
chr25_+_29160102 Show fit | 56.61 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr23_+_20110086 Show fit | 55.35 |
ENSDART00000054664
|
troponin C type 1b (slow) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 138.9 | GO:0006936 | muscle contraction(GO:0006936) |
2.3 | 108.1 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
8.0 | 104.6 | GO:0046314 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
1.5 | 96.8 | GO:0010842 | retina layer formation(GO:0010842) |
19.1 | 95.6 | GO:0003210 | cardiac atrium formation(GO:0003210) |
2.9 | 81.3 | GO:0032233 | positive regulation of actin filament bundle assembly(GO:0032233) |
2.2 | 71.7 | GO:0050821 | protein stabilization(GO:0050821) |
0.1 | 70.9 | GO:0016567 | protein ubiquitination(GO:0016567) |
4.2 | 58.7 | GO:0032264 | IMP salvage(GO:0032264) |
1.0 | 56.6 | GO:0006096 | glycolytic process(GO:0006096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.3 | 243.1 | GO:0031674 | I band(GO:0031674) |
11.0 | 231.7 | GO:0031430 | M band(GO:0031430) |
2.6 | 153.6 | GO:0036379 | striated muscle thin filament(GO:0005865) myofilament(GO:0036379) |
0.0 | 82.8 | GO:0005737 | cytoplasm(GO:0005737) |
0.0 | 60.6 | GO:0005829 | cytosol(GO:0005829) |
3.0 | 48.7 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
2.8 | 47.5 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.9 | 36.7 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 35.2 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 34.5 | GO:0005615 | extracellular space(GO:0005615) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 233.3 | GO:0005509 | calcium ion binding(GO:0005509) |
0.5 | 188.8 | GO:0051015 | actin filament binding(GO:0051015) |
0.4 | 108.6 | GO:0003779 | actin binding(GO:0003779) |
9.6 | 105.1 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
8.0 | 104.6 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
5.0 | 75.1 | GO:0030544 | Hsp70 protein binding(GO:0030544) |
2.4 | 68.0 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.5 | 61.8 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
3.0 | 60.3 | GO:0051393 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
5.3 | 58.7 | GO:0003876 | AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 43.5 | NABA COLLAGENS | Genes encoding collagen proteins |
1.7 | 36.7 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.5 | 33.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.7 | 27.0 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
1.2 | 25.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.3 | 17.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.4 | 12.2 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.5 | 11.0 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.2 | 7.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.4 | 6.6 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.5 | 45.0 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
1.3 | 27.6 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
1.9 | 26.6 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
1.0 | 25.8 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.8 | 24.1 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.5 | 22.1 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
2.7 | 21.4 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
1.3 | 16.1 | REACTOME GENERATION OF SECOND MESSENGER MOLECULES | Genes involved in Generation of second messenger molecules |
0.8 | 13.1 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.2 | 12.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |