PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ptf1a | dr11_v1_chr2_+_29710857_29710857 | -0.53 | 4.9e-08 | Click! |
si:dkey-34f9.3 | dr11_v1_chr9_+_45789887_45789887 | -0.48 | 1.1e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_6172154 Show fit | 21.32 |
ENSDART00000185434
|
apobec1 complementation factor |
|
chr7_+_21841037 Show fit | 18.99 |
ENSDART00000077503
|
transmembrane 4 L six family member 5 |
|
chr18_+_5490668 Show fit | 18.18 |
ENSDART00000167035
|
muscle-specific beta 1 integrin binding protein 2 |
|
chr5_+_28848870 Show fit | 16.03 |
ENSDART00000149563
|
zgc:174259 |
|
chr4_+_72797711 Show fit | 15.91 |
ENSDART00000190934
ENSDART00000163236 |
myelin regulatory factor-like |
|
chr5_+_28849155 Show fit | 15.77 |
ENSDART00000079090
|
zgc:174259 |
|
chr5_+_28857969 Show fit | 14.47 |
ENSDART00000149850
|
si:ch211-186e20.2 |
|
chr25_+_31227747 Show fit | 13.84 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr7_-_38644560 Show fit | 13.20 |
ENSDART00000114934
|
six-cysteine containing astacin protease 3 |
|
chr2_-_1514001 Show fit | 12.75 |
ENSDART00000057736
|
complement component 8, beta polypeptide |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 57.3 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 30.7 | GO:1902680 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
0.0 | 28.2 | GO:0006508 | proteolysis(GO:0006508) |
1.5 | 21.3 | GO:0016556 | mRNA modification(GO:0016556) |
0.6 | 18.2 | GO:0070831 | basement membrane assembly(GO:0070831) |
0.2 | 15.9 | GO:0014904 | myotube cell development(GO:0014904) skeletal muscle fiber development(GO:0048741) |
0.5 | 12.7 | GO:0019835 | cytolysis(GO:0019835) |
0.2 | 12.7 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
2.3 | 11.6 | GO:0010133 | proline catabolic process to glutamate(GO:0010133) |
1.6 | 9.7 | GO:1902837 | L-arginine import(GO:0043091) amino acid import across plasma membrane(GO:0089718) arginine import(GO:0090467) L-arginine import across plasma membrane(GO:0097638) L-arginine transport(GO:1902023) L-arginine import into cell(GO:1902765) amino acid import into cell(GO:1902837) L-arginine transmembrane transport(GO:1903400) arginine transmembrane transport(GO:1903826) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 66.5 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 44.0 | GO:0000785 | chromatin(GO:0000785) |
0.8 | 12.7 | GO:0005579 | membrane attack complex(GO:0005579) |
0.3 | 12.7 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 11.6 | GO:0005739 | mitochondrion(GO:0005739) |
0.8 | 9.6 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.0 | 8.3 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
2.2 | 6.6 | GO:0071065 | alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex(GO:0071065) |
0.0 | 6.2 | GO:0005938 | cell cortex(GO:0005938) |
0.0 | 5.4 | GO:0016459 | myosin complex(GO:0016459) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 94.3 | GO:0008270 | zinc ion binding(GO:0008270) |
0.5 | 61.4 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.2 | 36.4 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.3 | 21.3 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
2.6 | 18.2 | GO:0050262 | ribosylnicotinamide kinase activity(GO:0050262) |
0.2 | 12.4 | GO:0005044 | scavenger receptor activity(GO:0005044) |
2.9 | 11.6 | GO:0004657 | proline dehydrogenase activity(GO:0004657) |
0.0 | 11.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
0.1 | 10.2 | GO:0008081 | phosphoric diester hydrolase activity(GO:0008081) |
1.4 | 9.7 | GO:0015189 | L-lysine transmembrane transporter activity(GO:0015189) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.8 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 5.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.3 | 4.5 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.2 | 4.2 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.2 | 3.6 | PID ARF 3PATHWAY | Arf1 pathway |
0.1 | 3.2 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.1 | 2.7 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
0.0 | 1.6 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.7 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.8 | REACTOME MRNA PROCESSING | Genes involved in mRNA Processing |
0.5 | 12.7 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.4 | 9.7 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.6 | 9.6 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.0 | 8.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 6.1 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 5.4 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.0 | 4.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.4 | 4.2 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
0.2 | 3.9 | REACTOME METABOLISM OF NON CODING RNA | Genes involved in Metabolism of non-coding RNA |