PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tfdp1a | dr11_v1_chr9_+_34950942_34950942 | 0.64 | 2.8e-12 | Click! |
tfdp1b | dr11_v1_chr1_+_230363_230363 | 0.28 | 6.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_-_41305748 Show fit | 45.34 |
ENSDART00000170457
|
neuronal vesicle trafficking associated 2 |
|
chr4_+_5741733 Show fit | 41.77 |
ENSDART00000110243
|
POU class 3 homeobox 2a |
|
chr9_-_44295071 Show fit | 34.14 |
ENSDART00000011837
|
neuronal differentiation 1 |
|
chr18_+_18104235 Show fit | 31.52 |
ENSDART00000145342
|
cerebellin 1 precursor |
|
chr22_-_11493236 Show fit | 29.39 |
ENSDART00000002691
|
tetraspanin 7b |
|
chr19_+_31771270 Show fit | 28.85 |
ENSDART00000147474
|
stathmin 2b |
|
chr4_-_5764255 Show fit | 28.62 |
ENSDART00000113864
|
failed axon connections homolog a |
|
chr14_+_35748385 Show fit | 27.92 |
ENSDART00000064617
ENSDART00000074671 ENSDART00000172803 |
glutamate receptor, ionotropic, AMPA 2b |
|
chr14_+_35748206 Show fit | 27.64 |
ENSDART00000177391
|
glutamate receptor, ionotropic, AMPA 2b |
|
chr18_-_5692292 Show fit | 27.33 |
ENSDART00000121503
|
complexin 3b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 107.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
2.2 | 70.4 | GO:0048268 | clathrin coat assembly(GO:0048268) |
1.1 | 62.2 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
1.0 | 53.2 | GO:0051588 | regulation of neurotransmitter transport(GO:0051588) |
2.7 | 46.3 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
0.3 | 45.5 | GO:0000209 | protein polyubiquitination(GO:0000209) |
3.0 | 45.2 | GO:0035493 | SNARE complex assembly(GO:0035493) |
0.8 | 39.7 | GO:0007019 | microtubule depolymerization(GO:0007019) |
0.9 | 33.2 | GO:0045746 | negative regulation of Notch signaling pathway(GO:0045746) |
3.4 | 30.3 | GO:0048172 | regulation of short-term neuronal synaptic plasticity(GO:0048172) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 142.3 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 132.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.6 | 117.9 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.0 | 74.1 | GO:0005634 | nucleus(GO:0005634) |
0.2 | 72.4 | GO:0043005 | neuron projection(GO:0043005) |
0.0 | 64.7 | GO:0005886 | plasma membrane(GO:0005886) |
2.2 | 53.9 | GO:0043195 | terminal bouton(GO:0043195) |
0.2 | 48.9 | GO:0030424 | axon(GO:0030424) |
0.0 | 42.5 | GO:0016021 | integral component of membrane(GO:0016021) |
0.1 | 42.3 | GO:0005768 | endosome(GO:0005768) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 182.6 | GO:0005509 | calcium ion binding(GO:0005509) |
5.0 | 75.5 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.8 | 66.8 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
1.5 | 59.3 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 50.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.9 | 47.1 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
1.0 | 46.1 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
2.9 | 40.4 | GO:0032051 | clathrin light chain binding(GO:0032051) |
0.1 | 40.3 | GO:0015631 | tubulin binding(GO:0015631) |
0.7 | 33.6 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 52.8 | PID REELIN PATHWAY | Reelin signaling pathway |
2.4 | 50.0 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.4 | 27.0 | PID E2F PATHWAY | E2F transcription factor network |
1.3 | 26.4 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.3 | 23.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.4 | 18.8 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.2 | 11.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.3 | 11.4 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.2 | 10.6 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.4 | 10.2 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 34.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
1.8 | 28.1 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
1.7 | 25.8 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
2.1 | 25.4 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
1.6 | 22.7 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
7.5 | 22.5 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.2 | 20.8 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.3 | 19.4 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.6 | 18.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
1.7 | 18.3 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |