PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf711 | dr11_v1_chr14_-_12020653_12020653 | -0.15 | 1.5e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 47.4 | GO:0007519 | skeletal muscle tissue development(GO:0007519) |
3.6 | 46.8 | GO:0046314 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.3 | 38.8 | GO:0031101 | fin regeneration(GO:0031101) |
1.5 | 17.0 | GO:0030240 | skeletal muscle thin filament assembly(GO:0030240) |
3.1 | 12.3 | GO:0035630 | bone mineralization involved in bone maturation(GO:0035630) |
0.3 | 10.7 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.1 | 10.3 | GO:0061515 | myeloid cell development(GO:0061515) |
0.1 | 7.8 | GO:0006414 | translational elongation(GO:0006414) |
0.7 | 7.4 | GO:0035284 | central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284) |
1.8 | 7.2 | GO:0010882 | regulation of cardiac muscle contraction by calcium ion signaling(GO:0010882) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 38.7 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 35.0 | GO:0005576 | extracellular region(GO:0005576) |
0.4 | 33.0 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 29.3 | GO:0005739 | mitochondrion(GO:0005739) |
2.5 | 27.4 | GO:0045095 | keratin filament(GO:0045095) |
1.0 | 21.4 | GO:0031430 | M band(GO:0031430) |
0.3 | 15.6 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.9 | 14.1 | GO:0005869 | dynactin complex(GO:0005869) |
0.5 | 9.0 | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263) |
0.1 | 8.9 | GO:0030017 | sarcomere(GO:0030017) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 46.8 | GO:0016775 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
1.9 | 38.7 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
0.3 | 35.3 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 15.9 | GO:0003779 | actin binding(GO:0003779) |
0.4 | 10.1 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.1 | 9.1 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.1 | 8.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.2 | 8.2 | GO:0019843 | rRNA binding(GO:0019843) |
0.2 | 8.2 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.0 | 7.0 | GO:0046983 | protein dimerization activity(GO:0046983) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 31.8 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.4 | 9.0 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.1 | 5.9 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.3 | 5.4 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.3 | 5.1 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.1 | 5.1 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.2 | 4.9 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.2 | 3.8 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 3.4 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
0.2 | 2.7 | ST GA12 PATHWAY | G alpha 12 Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 18.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.3 | 10.9 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 8.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.3 | 6.0 | REACTOME DESTABILIZATION OF MRNA BY KSRP | Genes involved in Destabilization of mRNA by KSRP |
0.1 | 6.0 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.2 | 5.7 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
0.7 | 5.1 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.1 | 5.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 4.5 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
0.0 | 4.4 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |