PRJEB1986: zebrafish developmental stages transcriptome
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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creb1a+creb1b+crema+cremb | 8.02 |
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tbp | 6.41 |
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etv5a+etv5b_elk1_elk4_etv1_elf1_erf+erfl3_gabpa_elk3 | 6.17 |
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rest | 5.40 |
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maza+mazb | 4.71 |
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snai1a | 4.71 |
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e2f2_e2f5 | 4.47 |
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bhlhe41_tfeb_usf2_tfec_max_mnta+mntb_mitfa+mitfb_mlxipl_usf1_usf1l_mxi1_srebf1 | 4.18 |
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fosaa+fosab+fosl1a | 3.89 |
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hoxb6a+hoxb6b | 3.86 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.