PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000077946 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 | |
ENSDARG00000110907 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
smarcc2 | dr11_v1_chr6_+_39836474_39836474 | -0.91 | 8.4e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_2725594 Show fit | 5.10 |
ENSDART00000152120
|
akirin 2 |
|
chr15_+_2857556 Show fit | 4.00 |
ENSDART00000157758
|
MRE11 homolog A, double strand break repair nuclease |
|
chr20_-_2725930 Show fit | 3.59 |
ENSDART00000081643
|
akirin 2 |
|
chr11_+_29537756 Show fit | 3.56 |
ENSDART00000103388
|
wu:fi42e03 |
|
chr1_+_9153141 Show fit | 3.53 |
ENSDART00000081343
|
polo-like kinase 1 (Drosophila) |
|
chr13_+_24402406 Show fit | 3.49 |
ENSDART00000043002
|
RAB1A, member RAS oncogene family b |
|
chr24_+_29352039 Show fit | 3.18 |
ENSDART00000101641
|
protein arginine methyltransferase 6 |
|
chr16_+_27442549 Show fit | 3.11 |
ENSDART00000015688
|
inversin |
|
chr3_-_26184018 Show fit | 3.07 |
ENSDART00000191604
|
si:ch211-11k18.4 |
|
chr11_-_16021424 Show fit | 3.06 |
ENSDART00000193291
ENSDART00000170731 ENSDART00000104107 |
zgc:173544 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.7 | GO:0045089 | positive regulation of innate immune response(GO:0045089) |
0.1 | 5.2 | GO:0016575 | histone deacetylation(GO:0016575) |
0.6 | 4.3 | GO:0006621 | protein retention in ER lumen(GO:0006621) |
0.1 | 4.1 | GO:0000154 | rRNA modification(GO:0000154) |
0.1 | 4.1 | GO:0007019 | microtubule depolymerization(GO:0007019) |
0.5 | 4.0 | GO:0042138 | meiotic DNA double-strand break formation(GO:0042138) |
0.1 | 3.5 | GO:0032465 | regulation of cytokinesis(GO:0032465) |
0.1 | 3.5 | GO:1905037 | autophagosome assembly(GO:0000045) autophagosome organization(GO:1905037) |
0.5 | 3.3 | GO:0001887 | selenium compound metabolic process(GO:0001887) |
0.8 | 3.2 | GO:0034969 | histone arginine methylation(GO:0034969) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.0 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 6.0 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 6.0 | GO:0000139 | Golgi membrane(GO:0000139) |
0.2 | 5.2 | GO:0070822 | Sin3-type complex(GO:0070822) |
0.1 | 5.1 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.2 | 4.7 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.1 | 4.6 | GO:0000922 | spindle pole(GO:0000922) |
0.8 | 4.5 | GO:0030870 | Mre11 complex(GO:0030870) |
0.1 | 4.1 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
0.3 | 4.0 | GO:0031010 | ISWI-type complex(GO:0031010) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.6 | GO:0005525 | GTP binding(GO:0005525) |
0.1 | 5.2 | GO:0042826 | histone deacetylase binding(GO:0042826) |
0.1 | 4.1 | GO:0000049 | tRNA binding(GO:0000049) |
0.0 | 4.1 | GO:0005516 | calmodulin binding(GO:0005516) |
0.0 | 4.1 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.7 | 4.0 | GO:0000014 | single-stranded DNA endodeoxyribonuclease activity(GO:0000014) |
0.0 | 3.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.7 | 3.3 | GO:0008430 | selenium binding(GO:0008430) |
0.6 | 3.2 | GO:0008469 | histone-arginine N-methyltransferase activity(GO:0008469) |
0.2 | 3.0 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.3 | PID ATM PATHWAY | ATM pathway |
0.1 | 4.0 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 3.5 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 3.0 | PID REELIN PATHWAY | Reelin signaling pathway |
0.2 | 2.8 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.1 | 2.0 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.0 | 2.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.0 | 1.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.2 | 1.5 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.1 | 1.4 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.4 | REACTOME POST TRANSLATIONAL MODIFICATION SYNTHESIS OF GPI ANCHORED PROTEINS | Genes involved in Post-translational modification: synthesis of GPI-anchored proteins |
0.2 | 4.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.1 | 4.2 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.2 | 3.5 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.2 | 3.4 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
0.1 | 3.3 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 2.7 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
0.2 | 2.6 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 2.5 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.0 | 2.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |