PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
CABZ01087224.1 | dr11_v1_chr3_+_11568523_11568523 | -0.66 | 2.2e-03 | Click! |
hlfb | dr11_v1_chr12_+_32159272_32159272 | -0.60 | 6.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_20195350 Show fit | 2.85 |
ENSDART00000139675
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr16_-_45910050 Show fit | 2.29 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr18_-_16922905 Show fit | 2.27 |
ENSDART00000187165
|
WEE1 G2 checkpoint kinase |
|
chr22_+_10606573 Show fit | 1.99 |
ENSDART00000192638
|
RAD54 like 2 |
|
chr4_+_5196469 Show fit | 1.91 |
ENSDART00000067386
|
RAD51 associated protein 1 |
|
chr10_-_20523405 Show fit | 1.62 |
ENSDART00000114824
|
DDHD domain containing 2 |
|
chr5_+_22974019 Show fit | 1.51 |
ENSDART00000147157
ENSDART00000020434 |
bromodomain and WD repeat domain containing 3 |
|
chr3_-_40275096 Show fit | 1.48 |
ENSDART00000141578
|
serine hydroxymethyltransferase 1 (soluble) |
|
chr9_-_32300783 Show fit | 1.40 |
ENSDART00000078596
|
heat shock 60 protein 1 |
|
chr14_-_30905288 Show fit | 1.39 |
ENSDART00000173449
ENSDART00000173451 |
si:ch211-126c2.4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.8 | GO:0060030 | dorsal convergence(GO:0060030) |
0.8 | 3.3 | GO:0006524 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.1 | 2.9 | GO:0036297 | interstrand cross-link repair(GO:0036297) |
0.1 | 2.6 | GO:0051085 | 'de novo' protein folding(GO:0006458) 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085) |
0.6 | 2.3 | GO:0032755 | positive regulation of interleukin-6 production(GO:0032755) protein import into mitochondrial intermembrane space(GO:0045041) |
0.0 | 2.3 | GO:0007093 | mitotic cell cycle checkpoint(GO:0007093) |
0.5 | 1.8 | GO:0044210 | 'de novo' CTP biosynthetic process(GO:0044210) |
0.0 | 1.6 | GO:0060395 | SMAD protein signal transduction(GO:0060395) |
0.5 | 1.5 | GO:0019264 | glycine biosynthetic process from serine(GO:0019264) |
0.4 | 1.4 | GO:0032790 | ribosome disassembly(GO:0032790) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.0 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.0 | 4.7 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 1.9 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.5 | 1.8 | GO:0097268 | cytoophidium(GO:0097268) |
0.0 | 1.6 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
0.1 | 1.5 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.1 | 1.2 | GO:0070187 | telosome(GO:0070187) |
0.1 | 1.1 | GO:0036038 | MKS complex(GO:0036038) |
0.3 | 1.0 | GO:0097134 | cyclin E1-CDK2 complex(GO:0097134) |
0.3 | 1.0 | GO:0070209 | ASTRA complex(GO:0070209) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.1 | GO:0051087 | chaperone binding(GO:0051087) |
0.8 | 3.3 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.0 | 2.4 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
0.0 | 2.2 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.5 | 1.8 | GO:0003883 | CTP synthase activity(GO:0003883) |
0.1 | 1.8 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
0.1 | 1.6 | GO:0004806 | triglyceride lipase activity(GO:0004806) |
0.0 | 1.6 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.5 | 1.5 | GO:0004372 | glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905) |
0.1 | 1.5 | GO:0070411 | I-SMAD binding(GO:0070411) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.2 | 2.3 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 2.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 1.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.1 | 1.5 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 1.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 1.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.9 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 0.7 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.0 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.0 | 2.3 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 1.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 1.5 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.2 | 1.4 | REACTOME ANDROGEN BIOSYNTHESIS | Genes involved in Androgen biosynthesis |
0.2 | 1.4 | REACTOME EARLY PHASE OF HIV LIFE CYCLE | Genes involved in Early Phase of HIV Life Cycle |
0.0 | 1.4 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
0.0 | 1.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 1.0 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.2 | 0.9 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |