PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
atf6 | dr11_v1_chr20_-_33909872_33909872 | -0.71 | 6.2e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_45910050 Show fit | 2.16 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr18_+_619619 Show fit | 1.67 |
ENSDART00000159846
|
protogenin homolog a (Gallus gallus) |
|
chr4_+_47257854 Show fit | 1.46 |
ENSDART00000173868
|
crestin |
|
chr2_-_47431205 Show fit | 0.97 |
ENSDART00000014350
ENSDART00000038828 |
paired box 3a |
|
chr11_+_42494531 Show fit | 0.92 |
ENSDART00000067604
|
ADP-ribosylation factor 4a |
|
chr3_-_26183699 Show fit | 0.92 |
ENSDART00000147517
ENSDART00000140731 |
si:ch211-11k18.4 |
|
chr1_+_38142354 Show fit | 0.92 |
ENSDART00000179352
|
UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 |
|
chr4_-_19693978 Show fit | 0.88 |
ENSDART00000100974
ENSDART00000040405 |
staphylococcal nuclease and tudor domain containing 1 |
|
chr17_-_22324727 Show fit | 0.87 |
ENSDART00000160341
|
|
|
chr22_-_10641873 Show fit | 0.87 |
ENSDART00000064772
|
cytochrome b561 family, member D2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | GO:0007030 | Golgi organization(GO:0007030) |
0.1 | 2.2 | GO:0060030 | dorsal convergence(GO:0060030) |
0.0 | 1.5 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
0.3 | 1.2 | GO:0045668 | negative regulation of osteoblast differentiation(GO:0045668) |
0.0 | 1.2 | GO:0008285 | negative regulation of cell proliferation(GO:0008285) |
0.1 | 1.0 | GO:0006621 | protein retention in ER lumen(GO:0006621) |
0.1 | 1.0 | GO:0050936 | xanthophore differentiation(GO:0050936) |
0.0 | 1.0 | GO:0048702 | embryonic neurocranium morphogenesis(GO:0048702) |
0.0 | 0.9 | GO:0031047 | gene silencing by RNA(GO:0031047) |
0.2 | 0.8 | GO:0015677 | copper ion import(GO:0015677) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0005801 | cis-Golgi network(GO:0005801) |
0.0 | 1.3 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 1.1 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 1.0 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
0.1 | 0.9 | GO:0016442 | RISC complex(GO:0016442) RNAi effector complex(GO:0031332) |
0.0 | 0.9 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.1 | 0.8 | GO:0089701 | U2AF(GO:0089701) |
0.1 | 0.8 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
0.0 | 0.6 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
0.1 | 0.5 | GO:0071595 | Nem1-Spo7 phosphatase complex(GO:0071595) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0051864 | histone demethylase activity (H3-K36 specific)(GO:0051864) |
0.0 | 1.2 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.3 | 1.0 | GO:0046923 | ER retention sequence binding(GO:0046923) |
0.1 | 1.0 | GO:0005537 | mannose binding(GO:0005537) |
0.1 | 0.9 | GO:0004322 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.0 | 0.9 | GO:0005338 | nucleotide-sugar transmembrane transporter activity(GO:0005338) |
0.0 | 0.9 | GO:0003887 | DNA-directed DNA polymerase activity(GO:0003887) |
0.0 | 0.9 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.2 | 0.8 | GO:0008823 | cupric reductase activity(GO:0008823) ferric-chelate reductase (NADPH) activity(GO:0052851) |
0.1 | 0.8 | GO:0004060 | arylamine N-acetyltransferase activity(GO:0004060) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 1.0 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
0.0 | 1.0 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 1.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.9 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.3 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.0 | 0.2 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.2 | ST P38 MAPK PATHWAY | p38 MAPK Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
0.0 | 1.5 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 1.4 | REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION | Genes involved in Transport to the Golgi and subsequent modification |
0.0 | 1.2 | REACTOME REGULATION OF APOPTOSIS | Genes involved in Regulation of Apoptosis |
0.1 | 0.8 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |
0.0 | 0.8 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.0 | 0.7 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.0 | 0.7 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
0.0 | 0.6 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.0 | 0.4 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |