PRJEB1986: zebrafish developmental stages transcriptome
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_11385155 Show fit | 5.51 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr11_+_30244356 Show fit | 5.15 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr3_-_50443607 Show fit | 4.98 |
ENSDART00000074036
|
recoverin a |
|
chr3_-_31079186 Show fit | 4.75 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr19_+_10339538 Show fit | 3.49 |
ENSDART00000151808
ENSDART00000151235 |
recoverin 3 |
|
chr20_-_40755614 Show fit | 3.13 |
ENSDART00000061247
|
connexin 32.3 |
|
chr22_+_28337204 Show fit | 3.10 |
ENSDART00000163352
|
interphotoreceptor matrix proteoglycan 2b |
|
chr25_-_10503043 Show fit | 3.09 |
ENSDART00000155404
|
cytochrome c oxidase subunit 8b |
|
chr2_+_39021282 Show fit | 3.09 |
ENSDART00000056577
|
si:ch211-119o8.7 |
|
chr22_+_28337429 Show fit | 3.07 |
ENSDART00000166177
|
interphotoreceptor matrix proteoglycan 2b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.4 | GO:0050953 | sensory perception of light stimulus(GO:0050953) |
0.8 | 8.5 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.0 | 5.7 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
0.1 | 4.4 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.4 | 4.0 | GO:1902868 | positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868) |
0.1 | 2.8 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.0 | 2.8 | GO:0006414 | translational elongation(GO:0006414) |
0.1 | 2.7 | GO:0015936 | coenzyme A metabolic process(GO:0015936) |
0.0 | 2.4 | GO:0010506 | regulation of autophagy(GO:0010506) |
0.0 | 2.3 | GO:0006119 | oxidative phosphorylation(GO:0006119) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 6.2 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.8 | 4.8 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 4.2 | GO:0030424 | axon(GO:0030424) |
0.2 | 3.1 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
0.1 | 2.8 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 2.7 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 2.1 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.2 | 2.0 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 2.0 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.3 | 1.7 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.2 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.0 | 4.5 | GO:0019905 | syntaxin binding(GO:0019905) |
0.1 | 3.1 | GO:0004129 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.1 | 2.8 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.1 | 2.5 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.4 | 2.1 | GO:0031843 | neuropeptide Y receptor binding(GO:0031841) type 2 neuropeptide Y receptor binding(GO:0031843) |
0.3 | 2.1 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.1 | 2.0 | GO:0005237 | inhibitory extracellular ligand-gated ion channel activity(GO:0005237) benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.1 | 2.0 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.0 | 2.0 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.7 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 1.5 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.1 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.9 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.7 | PID EPO PATHWAY | EPO signaling pathway |
0.0 | 0.4 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.4 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.0 | 1.6 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 1.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 1.4 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.0 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.1 | 0.9 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |
0.1 | 0.9 | REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the early endosome membrane |
0.0 | 0.9 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.0 | 0.7 | REACTOME REGULATION OF KIT SIGNALING | Genes involved in Regulation of KIT signaling |
0.0 | 0.6 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |