PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tbx19 | dr11_v1_chr6_+_9204099_9204099 | -0.34 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr25_+_35020529 Show fit | 1.18 |
ENSDART00000158016
|
filamin C, gamma a (actin binding protein 280) |
|
chr5_-_20195350 Show fit | 1.10 |
ENSDART00000139675
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr18_-_33979693 Show fit | 1.00 |
ENSDART00000021215
|
si:ch211-203b20.7 |
|
chr9_-_55128839 Show fit | 0.79 |
ENSDART00000085135
|
transducin beta like 1 X-linked |
|
chr3_+_60716904 Show fit | 0.70 |
ENSDART00000168280
|
forkhead box J1a |
|
chr17_+_23311377 Show fit | 0.68 |
ENSDART00000128073
|
protein phosphatase 1, regulatory subunit 3Ca |
|
chr22_+_4443689 Show fit | 0.67 |
ENSDART00000185490
|
toll-like receptor adaptor molecule 1 |
|
chr5_-_8765428 Show fit | 0.67 |
ENSDART00000167793
|
MYB binding protein (P160) 1a |
|
chr1_+_19943803 Show fit | 0.63 |
ENSDART00000164661
|
amyloid beta (A4) precursor protein-binding, family B, member 2b |
|
chr9_+_20853894 Show fit | 0.60 |
ENSDART00000003648
|
WD repeat domain 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0046716 | muscle cell cellular homeostasis(GO:0046716) |
0.3 | 1.1 | GO:0046436 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.0 | 0.8 | GO:0016575 | histone deacetylation(GO:0016575) |
0.2 | 0.7 | GO:0035666 | regulation of natural killer cell activation(GO:0032814) positive regulation of natural killer cell activation(GO:0032816) TRIF-dependent toll-like receptor signaling pathway(GO:0035666) |
0.1 | 0.7 | GO:0060295 | regulation of cilium movement involved in cell motility(GO:0060295) regulation of cilium beat frequency involved in ciliary motility(GO:0060296) regulation of cilium-dependent cell motility(GO:1902019) |
0.0 | 0.7 | GO:0010962 | regulation of glycogen biosynthetic process(GO:0005979) regulation of glucan biosynthetic process(GO:0010962) |
0.0 | 0.7 | GO:0006298 | mismatch repair(GO:0006298) |
0.0 | 0.6 | GO:0045920 | negative regulation of exocytosis(GO:0045920) |
0.0 | 0.6 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
0.1 | 0.5 | GO:0061113 | endodermal digestive tract morphogenesis(GO:0061031) pancreas morphogenesis(GO:0061113) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 0.8 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.1 | 0.7 | GO:0032300 | mismatch repair complex(GO:0032300) |
0.0 | 0.7 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.1 | 0.6 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
0.0 | 0.6 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 0.5 | GO:0000784 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) nuclear chromosome, telomeric region(GO:0000784) |
0.0 | 0.5 | GO:0045495 | pole plasm(GO:0045495) |
0.0 | 0.4 | GO:0070776 | H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776) |
0.0 | 0.4 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0008173 | RNA methyltransferase activity(GO:0008173) |
0.3 | 1.1 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.0 | 0.8 | GO:0016846 | carbon-sulfur lyase activity(GO:0016846) |
0.0 | 0.7 | GO:2001069 | glycogen binding(GO:2001069) |
0.0 | 0.7 | GO:0030983 | mismatched DNA binding(GO:0030983) |
0.2 | 0.6 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
0.0 | 0.6 | GO:0030515 | snoRNA binding(GO:0030515) |
0.0 | 0.6 | GO:0001540 | beta-amyloid binding(GO:0001540) |
0.1 | 0.5 | GO:0010521 | telomerase inhibitor activity(GO:0010521) |
0.1 | 0.5 | GO:0001223 | transcription coactivator binding(GO:0001223) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.6 | PID P53 REGULATION PATHWAY | p53 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.1 | 0.7 | REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 | Genes involved in IKK complex recruitment mediated by RIP1 |
0.0 | 0.5 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.0 | 0.3 | REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT | Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT) |
0.0 | 0.2 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |