PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SPDEF | dr11_v1_chr6_-_54290227_54290227 | 0.63 | 4.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_22749553 Show fit | 3.42 |
ENSDART00000040033
|
nucleoporin 107 |
|
chr23_-_33775145 Show fit | 3.34 |
ENSDART00000132147
ENSDART00000027959 ENSDART00000160116 |
Rac GTPase activating protein 1 |
|
chr20_+_39344889 Show fit | 3.30 |
ENSDART00000009164
|
establishment of sister chromatid cohesion N-acetyltransferase 2 |
|
chr20_+_13141408 Show fit | 3.22 |
ENSDART00000034098
|
denticleless E3 ubiquitin protein ligase homolog (Drosophila) |
|
chr8_+_23726708 Show fit | 3.17 |
ENSDART00000142395
|
makorin, ring finger protein, 4 |
|
chr18_+_29898955 Show fit | 3.08 |
ENSDART00000064080
|
centromere protein N |
|
chr6_-_34860574 Show fit | 3.02 |
ENSDART00000073957
|
solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1a |
|
chr1_+_49435017 Show fit | 2.96 |
ENSDART00000124833
|
programmed cell death 11 |
|
chr21_-_36619599 Show fit | 2.86 |
ENSDART00000065208
|
NOP16 nucleolar protein homolog (yeast) |
|
chr18_-_3552414 Show fit | 2.70 |
ENSDART00000163762
ENSDART00000165434 ENSDART00000161197 ENSDART00000166841 ENSDART00000170260 |
DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 8.6 | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462) |
0.3 | 5.8 | GO:0007096 | regulation of exit from mitosis(GO:0007096) |
0.0 | 4.7 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
0.2 | 4.6 | GO:0006515 | misfolded or incompletely synthesized protein catabolic process(GO:0006515) |
0.1 | 4.6 | GO:0006364 | rRNA processing(GO:0006364) |
0.0 | 3.8 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.1 | 3.7 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.0 | 3.6 | GO:0000956 | nuclear-transcribed mRNA catabolic process(GO:0000956) |
1.1 | 3.4 | GO:0000973 | posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000973) |
1.1 | 3.3 | GO:0034421 | post-translational protein acetylation(GO:0034421) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 6.0 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
0.5 | 5.0 | GO:0005688 | U6 snRNP(GO:0005688) |
0.2 | 4.8 | GO:0032040 | small-subunit processome(GO:0032040) |
0.0 | 4.3 | GO:0005730 | nucleolus(GO:0005730) |
0.2 | 4.1 | GO:0000784 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) nuclear chromosome, telomeric region(GO:0000784) |
0.3 | 3.7 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.3 | 3.7 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
0.9 | 3.6 | GO:0031429 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
0.0 | 3.5 | GO:0000785 | chromatin(GO:0000785) |
0.3 | 3.4 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.3 | GO:0030515 | snoRNA binding(GO:0030515) |
0.5 | 4.6 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
0.0 | 4.2 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 3.7 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
1.2 | 3.6 | GO:0034513 | box H/ACA snoRNA binding(GO:0034513) |
0.1 | 3.4 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.5 | 3.3 | GO:0008118 | N-acetyllactosaminide alpha-2,3-sialyltransferase activity(GO:0008118) |
0.0 | 3.3 | GO:0016407 | acetyltransferase activity(GO:0016407) |
0.1 | 3.2 | GO:0019843 | rRNA binding(GO:0019843) |
0.0 | 3.1 | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity(GO:0008138) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 5.9 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 3.8 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 3.3 | PID AURORA B PATHWAY | Aurora B signaling |
0.5 | 2.5 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
0.0 | 2.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.2 | 2.0 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.1 | 1.9 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.1 | 1.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 1.7 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.6 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.4 | 5.4 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.1 | 3.5 | REACTOME INHIBITION OF THE PROTEOLYTIC ACTIVITY OF APC C REQUIRED FOR THE ONSET OF ANAPHASE BY MITOTIC SPINDLE CHECKPOINT COMPONENTS | Genes involved in Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components |
0.1 | 3.4 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.2 | 3.3 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 3.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.2 | 3.1 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 2.9 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.4 | 2.7 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.2 | 2.6 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |